Receptor
PDB id Resolution Class Description Source Keywords
2J3M 2.3 Å EC: 6.1.1.15 PROLYL-TRNA SYNTHETASE FROM ENTEROCOCCUS FAECALIS COMPLEXED WITH ATP, MANGANESE AND PROLINOL ENTEROCOCCUS FAECALIS BACTERIAL-TYPE PROLYL-TRNA SYNTHETASE CLASS II AMINOACYL- TRNA SYNTHETASE EDITING TRANSLATION ATP + L-PROLINE + TRNA (PRO) GIVES AMP + PPI + L-PROLYL-TRNA(PRO) LIGASE
Ref.: STRUCTURES OF TWO BACTERIAL PROLYL-TRNA SYNTHETASES WITH AND WITHOUT A CIS-EDITING DOMAIN. STRUCTURE V. 14 1511 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ATP A:701;
B:701;
Valid;
Valid;
none;
none;
submit data
507.181 C10 H16 N5 O13 P3 c1nc(...
MN A:1567;
A:1568;
B:1567;
B:1568;
B:1569;
B:1570;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
54.938 Mn [Mn+2...
PRI A:1566;
B:1566;
Valid;
Valid;
none;
none;
submit data
99.131 C5 H9 N O C1C[C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2J3M 2.3 Å EC: 6.1.1.15 PROLYL-TRNA SYNTHETASE FROM ENTEROCOCCUS FAECALIS COMPLEXED WITH ATP, MANGANESE AND PROLINOL ENTEROCOCCUS FAECALIS BACTERIAL-TYPE PROLYL-TRNA SYNTHETASE CLASS II AMINOACYL- TRNA SYNTHETASE EDITING TRANSLATION ATP + L-PROLINE + TRNA (PRO) GIVES AMP + PPI + L-PROLYL-TRNA(PRO) LIGASE
Ref.: STRUCTURES OF TWO BACTERIAL PROLYL-TRNA SYNTHETASES WITH AND WITHOUT A CIS-EDITING DOMAIN. STRUCTURE V. 14 1511 2006
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ATP; Similar ligands found: 404
No: Ligand ECFP6 Tc MDL keys Tc
1 ATP 1 1
2 AQP 0.985507 1
3 5FA 0.985507 1
4 B4P 0.927536 0.971831
5 AP5 0.927536 0.971831
6 BA3 0.913043 0.971831
7 ADP 0.9 1
8 A2D 0.884058 0.971831
9 SAP 0.84 0.945946
10 AGS 0.84 0.945946
11 AN2 0.810811 0.985915
12 25L 0.809524 0.985915
13 APR 0.802632 0.971831
14 AR6 0.802632 0.971831
15 M33 0.8 0.958333
16 TAT 0.794872 0.958904
17 ACQ 0.794872 0.972222
18 AD9 0.792208 0.972222
19 ACP 0.789474 0.972222
20 A 0.788732 0.971429
21 AMP 0.788732 0.971429
22 ANP 0.772152 0.972222
23 ADX 0.753247 0.873418
24 CA0 0.753247 0.945205
25 A22 0.746988 0.985915
26 50T 0.74359 0.958333
27 APC 0.734177 0.958904
28 PRX 0.734177 0.893333
29 ABM 0.733333 0.917808
30 ATF 0.731707 0.958904
31 ITT 0.730769 0.943662
32 7D4 0.730769 0.905405
33 ADQ 0.729412 0.945205
34 AMP MG 0.72 0.891892
35 AP2 0.714286 0.958904
36 A12 0.714286 0.958904
37 A1R 0.709302 0.907895
38 SRA 0.706667 0.918919
39 5AL 0.698795 0.931507
40 OAD 0.693182 0.945205
41 ADP MG 0.6875 0.905405
42 AU1 0.6875 0.972222
43 SRP 0.682353 0.906667
44 G5P 0.680851 0.921053
45 BEF ADP 0.679012 0.881579
46 ADP BEF 0.679012 0.881579
47 25A 0.678161 0.971831
48 3OD 0.677778 0.945205
49 4AD 0.670455 0.92
50 G3A 0.670213 0.921053
51 00A 0.662921 0.883117
52 ADV 0.662651 0.932432
53 ADP PO3 0.662651 0.943662
54 RBY 0.662651 0.932432
55 BIS 0.659341 0.933333
56 5SV 0.659091 0.848101
57 8QN 0.659091 0.931507
58 OOB 0.659091 0.931507
59 GTA 0.65625 0.886076
60 ATP MG 0.654762 0.905405
61 UP5 0.653061 0.92
62 AMO 0.651685 0.932432
63 PAJ 0.651685 0.884615
64 2A5 0.650602 0.918919
65 MAP 0.647727 0.945946
66 3AT 0.647059 0.971831
67 AHX 0.644444 0.896104
68 DLL 0.644444 0.931507
69 PAP 0.642857 0.985714
70 ATR 0.642857 0.971429
71 PTJ 0.641304 0.896104
72 7D3 0.6375 0.905405
73 3UK 0.637363 0.918919
74 SON 0.634146 0.932432
75 A4P 0.633663 0.843373
76 ALF ADP 0.632184 0.87013
77 ADP ALF 0.632184 0.87013
78 LAD 0.630435 0.860759
79 WAQ 0.630435 0.883117
80 PR8 0.630435 0.85
81 AFH 0.628866 0.884615
82 DTP 0.627907 0.905405
83 GAP 0.627907 0.893333
84 ANP MG 0.625 0.894737
85 VO4 ADP 0.625 0.931507
86 ADP VO4 0.625 0.931507
87 1ZZ 0.623656 0.839506
88 TXA 0.623656 0.932432
89 FYA 0.623656 0.905405
90 ME8 0.623656 0.839506
91 NB8 0.623656 0.896104
92 T5A 0.621359 0.841463
93 RAB 0.619718 0.84507
94 ADN 0.619718 0.84507
95 XYA 0.619718 0.84507
96 9SN 0.610526 0.871795
97 48N 0.61 0.896104
98 AP0 0.607843 0.896104
99 FA5 0.604167 0.906667
100 YAP 0.604167 0.894737
101 TXD 0.60396 0.907895
102 6V0 0.60396 0.896104
103 NXX 0.60396 0.932432
104 NAI 0.60396 0.907895
105 DND 0.60396 0.932432
106 NAX 0.60396 0.873418
107 ADP BMA 0.602151 0.918919
108 A2R 0.6 0.985915
109 OMR 0.598039 0.851852
110 TXE 0.598039 0.907895
111 XAH 0.597938 0.839506
112 DAL AMP 0.593407 0.905405
113 7DT 0.593023 0.985714
114 AOC 0.592593 0.821918
115 4UV 0.591837 0.894737
116 DDS 0.590909 0.878378
117 139 0.590476 0.873418
118 CNA 0.584906 0.932432
119 6AD 0.58427 0.909091
120 5AS 0.583333 0.77907
121 5N5 0.581081 0.819444
122 4UU 0.58 0.894737
123 4TC 0.576923 0.896104
124 ADJ 0.575472 0.851852
125 5CD 0.573333 0.805556
126 A4D 0.573333 0.819444
127 RGT 0.571429 0.958904
128 A3P 0.571429 0.971429
129 7D5 0.56962 0.878378
130 LAQ 0.568627 0.839506
131 YLP 0.563107 0.819277
132 A A 0.5625 0.944444
133 UPA 0.561905 0.907895
134 AV2 0.56044 0.917808
135 COD 0.559633 0.811765
136 4UW 0.557692 0.860759
137 JB6 0.556701 0.883117
138 3AM 0.555556 0.929577
139 ATP A A A 0.555556 0.930556
140 A2P 0.552941 0.957143
141 TYM 0.552381 0.906667
142 NA7 0.552083 0.958904
143 EP4 0.551282 0.753247
144 MYR AMP 0.55102 0.817073
145 PPS 0.549451 0.873418
146 YLB 0.54717 0.819277
147 YLC 0.54717 0.839506
148 NAD 0.545455 0.931507
149 DAT 0.545455 0.905405
150 G5A 0.544444 0.77907
151 M2T 0.544304 0.734177
152 DTA 0.544304 0.786667
153 3DH 0.54321 0.773333
154 128 0.542857 0.776471
155 AHZ 0.538462 0.817073
156 SSA 0.537634 0.8
157 GTP 0.537634 0.92
158 MTA 0.5375 0.773333
159 IOT 0.537037 0.831325
160 A3D 0.535714 0.918919
161 TYR AMP 0.534653 0.881579
162 AR6 AR6 0.533981 0.917808
163 7MD 0.533981 0.8625
164 YLA 0.53211 0.819277
165 AMP DBH 0.529412 0.893333
166 IMO 0.529412 0.929577
167 TAD 0.528846 0.884615
168 AYB 0.527273 0.809524
169 A5A 0.526882 0.807229
170 TSB 0.526316 0.819277
171 EAD 0.525424 0.873418
172 2AM 0.52439 0.943662
173 6RE 0.52381 0.759494
174 7DD 0.522727 0.985714
175 V3L 0.521739 0.971831
176 AVV 0.520833 0.896104
177 BTX 0.517857 0.841463
178 NAE 0.517241 0.894737
179 54H 0.515789 0.788235
180 VMS 0.515789 0.788235
181 52H 0.515789 0.77907
182 NSS 0.515464 0.8
183 BT5 0.513274 0.831325
184 NAQ 0.512821 0.871795
185 ZAS 0.511905 0.766234
186 A3N 0.511628 0.786667
187 J7C 0.511628 0.769231
188 5X8 0.511111 0.763158
189 53H 0.510417 0.77907
190 5CA 0.510417 0.8
191 ARU 0.510204 0.860759
192 ARG AMP 0.509434 0.829268
193 AF3 ADP 3PG 0.509259 0.8375
194 LA8 ALF 3PG 0.509259 0.8375
195 ALF ADP 3PG 0.509259 0.8375
196 ZID 0.508475 0.918919
197 P1H 0.508197 0.851852
198 OVE 0.505882 0.905405
199 S4M 0.505747 0.666667
200 LPA AMP 0.504673 0.817073
201 7MC 0.504587 0.841463
202 DZD 0.5 0.884615
203 LSS 0.5 0.761364
204 DSZ 0.5 0.8
205 P5A 0.5 0.744444
206 DSH 0.5 0.725
207 FB0 0.5 0.804598
208 MAO 0.5 0.759036
209 NDE 0.495935 0.932432
210 N0B 0.495798 0.819277
211 M24 0.495726 0.85
212 YLY 0.495726 0.809524
213 NJP 0.495575 0.945946
214 NVA LMS 0.494949 0.761364
215 MGP 0.494737 0.884615
216 6C6 0.494624 0.881579
217 NAJ PZO 0.491379 0.848101
218 0WD 0.491228 0.921053
219 LEU LMS 0.49 0.761364
220 6G0 0.489583 0.884615
221 GJV 0.488636 0.75
222 6FA 0.488189 0.841463
223 5AD 0.486842 0.746479
224 GSU 0.485149 0.77907
225 KAA 0.485149 0.752809
226 71V 0.483146 0.907895
227 NEC 0.482759 0.746667
228 A3G 0.482759 0.8
229 NAD IBO 0.482456 0.87013
230 ODP 0.482456 0.909091
231 FAS 0.48062 0.851852
232 FAD 0.48062 0.851852
233 7D7 0.480519 0.743243
234 FDA 0.480315 0.833333
235 N6P 0.48 0.915493
236 2SA 0.479167 0.932432
237 GP3 0.478723 0.921053
238 4TA 0.478261 0.807229
239 G A A A 0.478261 0.871795
240 SFG 0.478261 0.75
241 NPW 0.477876 0.886076
242 NDP 0.477876 0.921053
243 NDC 0.47619 0.871795
244 YSA 0.47619 0.77907
245 MGO 0.474227 0.860759
246 6IA 0.473684 0.8375
247 TXP 0.473684 0.921053
248 GDP 0.473684 0.92
249 NZQ 0.473684 0.909091
250 A7D 0.472527 0.776316
251 SFD 0.469231 0.734043
252 ZDA 0.468085 0.864865
253 SA8 0.468085 0.707317
254 A5D 0.468085 0.786667
255 12D 0.46789 0.785714
256 PGS 0.467391 0.883117
257 MHZ 0.467391 0.697674
258 62F 0.466165 0.8625
259 DA 0.465909 0.878378
260 D5M 0.465909 0.878378
261 GGZ 0.464646 0.825
262 SAH 0.463158 0.74359
263 SAI 0.463158 0.734177
264 NAJ PYZ 0.46281 0.85
265 FAY 0.462687 0.8625
266 Y3J 0.4625 0.726027
267 PO4 PO4 A A A A PO4 0.460784 0.902778
268 AAM 0.460674 0.971429
269 RFL 0.459259 0.821429
270 SMM 0.459184 0.686047
271 AMZ 0.458824 0.916667
272 C2R 0.458824 0.90411
273 SAM 0.458333 0.690476
274 A3S 0.456522 0.810811
275 FNK 0.455224 0.804598
276 7C5 0.453704 0.818182
277 AAT 0.453608 0.707317
278 EEM 0.453608 0.690476
279 XNP 0.452991 0.873418
280 AIR 0.451219 0.901408
281 62X 0.45098 0.666667
282 GSP 0.45 0.873418
283 ETB 0.45 0.833333
284 DCA 0.45 0.823529
285 U A G G 0.449153 0.883117
286 NIA 0.448276 0.822785
287 AMP NAD 0.447154 0.881579
288 A3T 0.446809 0.821918
289 K15 0.446602 0.682353
290 A A A 0.446602 0.905405
291 PUA 0.446281 0.884615
292 6K6 0.445545 0.930556
293 GEK 0.445545 0.7375
294 4YB 0.445455 0.761364
295 S7M 0.444444 0.690476
296 DG1 0.443548 0.921053
297 1DG 0.443548 0.921053
298 Z5A 0.443548 0.77907
299 COA 0.442623 0.823529
300 0T1 0.442623 0.823529
301 WSA 0.442478 0.788235
302 8BR 0.43956 0.906667
303 101 0.438202 0.878378
304 IDP 0.4375 0.918919
305 NAP 0.435484 0.945205
306 APU 0.434783 0.894737
307 A U 0.434783 0.87013
308 7RP 0.433333 0.928571
309 A6D 0.432692 0.722892
310 CAO 0.432 0.795455
311 AMX 0.432 0.833333
312 COS 0.432 0.804598
313 TAP 0.432 0.907895
314 J7V 0.432 0.833333
315 30N 0.432 0.752688
316 V1N 0.431193 0.917808
317 649 0.429825 0.744444
318 P5F 0.429577 0.823529
319 NA0 0.428571 0.932432
320 CMX 0.428571 0.823529
321 7RA 0.428571 0.957747
322 SCO 0.428571 0.823529
323 0UM 0.427184 0.698795
324 GAV 0.427184 0.884615
325 ACK 0.426966 0.861111
326 1RB 0.426966 0.885714
327 QQY 0.426966 0.815789
328 GCP 0.425743 0.896104
329 G1R 0.425743 0.907895
330 FAM 0.425197 0.804598
331 FCX 0.425197 0.795455
332 ACO 0.425197 0.795455
333 GNH 0.424242 0.907895
334 F2N 0.423611 0.813953
335 GDC 0.422018 0.884615
336 GDD 0.422018 0.884615
337 GKE 0.422018 0.884615
338 HAX 0.421875 0.804598
339 3AD 0.421687 0.805556
340 GNP 0.421569 0.896104
341 FA9 0.42069 0.864198
342 KB1 0.420561 0.698795
343 TM1 0.420561 0.77381
344 H6Y 0.42 0.945205
345 2MC 0.419847 0.769231
346 3KK 0.418605 0.804598
347 FYN 0.418605 0.823529
348 S8M 0.417476 0.759494
349 2VA 0.416667 0.8
350 NHD 0.416667 0.905405
351 26A 0.416667 0.763158
352 QQX 0.41573 0.805195
353 SOP 0.415385 0.804598
354 OXK 0.415385 0.804598
355 COK 0.415385 0.804598
356 MCD 0.415385 0.804598
357 CA6 0.415385 0.729167
358 YE1 0.413534 0.813953
359 FAI 0.413043 0.916667
360 AS 0.413043 0.833333
361 RMB 0.413043 0.873239
362 1VU 0.412214 0.795455
363 CO6 0.412214 0.804598
364 CMC 0.412214 0.804598
365 NMX 0.412214 0.76087
366 SXZ 0.411215 0.710843
367 ANZ 0.410714 0.8
368 SCA 0.410448 0.804598
369 PLP AAD 0.409836 0.741573
370 SCD 0.409091 0.823529
371 CAJ 0.409091 0.804598
372 NAD BBN 0.408759 0.841463
373 NVA 2AD 0.408163 0.74359
374 D3Y 0.407767 0.789474
375 CC5 0.407407 0.816901
376 U G A 0.407407 0.839506
377 KH3 0.40708 0.674419
378 SLU 0.406504 0.770115
379 G 0.40625 0.906667
380 5GP 0.40625 0.906667
381 BCO 0.406015 0.804598
382 IVC 0.406015 0.813953
383 A1S 0.406015 0.804598
384 MLC 0.406015 0.804598
385 3HC 0.406015 0.813953
386 1HE 0.406015 0.786517
387 GTG 0.405405 0.886076
388 NMN AMP PO4 0.404959 0.87013
389 3D1 0.404762 0.773333
390 3L1 0.404762 0.773333
391 CMP 0.404255 0.901408
392 2BA 0.404255 0.915493
393 SO8 0.40404 0.789474
394 VRT 0.40404 0.769231
395 MCA 0.402985 0.795455
396 CAA 0.402985 0.813953
397 COO 0.402985 0.804598
398 NAD CJ3 0.402878 0.811765
399 G2R 0.401869 0.884615
400 3NZ 0.401869 0.782051
401 ZZB 0.4 0.77381
402 MC4 0.4 0.76087
403 2FA 0.4 0.813333
404 2CP 0.4 0.795455
Ligand no: 2; Ligand: PRI; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 PRI 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2J3M; Ligand: ATP; Similar sites found: 101
This union binding pocket(no: 1) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1VBH PEP 0.03244 0.40011 1.04895
2 4PQG NAG 0.02187 0.40035 1.36986
3 3BJU ATP 0.00005494 0.51471 1.53551
4 2ZTG A5A 0.00000001422 0.66305 1.57343
5 5BSR AMP 0.01739 0.40089 1.66052
6 4L80 OXL 0.007239 0.43456 1.72414
7 3VSV XYP 0.01746 0.40924 1.92308
8 1E1O LYS 0.0000006037 0.5354 1.98413
9 4MOB ADP 0.006855 0.43697 2.10843
10 3G2Y GF4 0.01381 0.42855 2.28137
11 5FWJ MMK 0.00934 0.42297 2.33546
12 1YQT ADP 0.03079 0.40154 2.41636
13 3HXU A5A 0.00000002106 0.62308 2.49433
14 1X54 4AD 0.0000007142 0.56523 2.53456
15 3T4L ZEA 0.0017 0.43643 2.59259
16 1P7T PYR 0.007595 0.42663 2.62238
17 3ACL 3F1 0.01031 0.40486 2.7027
18 2XGT NSS 0.0000002191 0.54346 2.75862
19 2CYB TYR 0.01471 0.42111 2.78638
20 1M5W DXP 0.02014 0.41035 2.88066
21 3E9I XAH 0.00000005607 0.62109 3.0426
22 3UPY FOM 0.02544 0.4099 3.14607
23 12AS AMP 0.00000856 0.52461 3.33333
24 4FE2 AIR 0.02066 0.40157 3.52941
25 3LKF PC 0.0495 0.40677 3.67893
26 1QH5 GSH 0.01485 0.41952 3.84615
27 1QH5 GBP 0.02522 0.40697 3.84615
28 2GK6 ADP 0.03047 0.40097 3.84615
29 1G51 AMO 0.0000004667 0.57766 4.02098
30 2HZQ STR 0.01812 0.41498 4.02299
31 2RHQ GAX 0.003494 0.40851 4.08163
32 3A16 PXO 0.003516 0.43563 4.28954
33 5F7U GLC GLC 0.0142 0.41931 4.37063
34 3QO8 SSA 0.000000457 0.60357 4.53608
35 4IAW LIZ 0.01285 0.41175 4.78723
36 1JQN DCO 0.008448 0.41652 4.8951
37 3IES M24 0.008305 0.40797 5.08167
38 3QRC SCR 0.0002571 0.50015 5.09554
39 3QSB 743 0.01328 0.41103 5.19126
40 1B09 PC 0.00392 0.44168 5.33981
41 2G30 ALA ALA PHE 0.001971 0.48102 5.42636
42 4DS0 A2G GAL NAG FUC 0.02033 0.42131 5.52147
43 3NEM ATP 0.0000002662 0.64111 5.70776
44 3NEM AMO 0.0000001143 0.56202 5.70776
45 2G50 PYR 0.01391 0.41448 6.03774
46 2YMZ LAT 0.002994 0.44396 6.15385
47 2Y6P CTP 0.01636 0.40658 6.41026
48 2Y91 98J 0.02474 0.41937 6.41509
49 1N9L FMN 0.002524 0.4249 6.42202
50 5LIA 6XN 0.01467 0.41969 6.46853
51 5DG2 GAL GLC 0.002939 0.44733 6.66667
52 3OV6 MK0 0.006302 0.40828 6.80101
53 3A5Y KAA 0.00000007092 0.60691 6.95652
54 1QKQ MAN 0.0003124 0.49934 7.04225
55 4BQO COA 0.008471 0.40878 7.05128
56 3G1Z AMP 0.00000002179 0.69431 7.36196
57 2VDF OCT 0.002318 0.4061 7.50988
58 2CJA ATP 0.000008342 0.54603 7.85441
59 3WG3 A2G GAL NAG FUC 0.02609 0.40039 7.86517
60 2QHS OCA 0.009502 0.4182 8.01688
61 2QV7 ADP 0.01129 0.40306 8.30861
62 2BVE PH5 0.004326 0.45784 8.40336
63 2CJ9 SSA 0.00000006278 0.58067 8.42912
64 2QHV OC9 0.007396 0.42807 9.04762
65 1LEK GLU GLN TYR LYS PHE TYR SER VAL 0.02224 0.41059 9.09091
66 5U98 1KX 0.02791 0.40221 9.09091
67 1WAP TRP 0.01117 0.40688 9.33333
68 4H2X G5A 0.0000002445 0.60026 9.53757
69 4H2W AMP 0.000001181 0.58475 9.53757
70 3MF2 AMP 0.0000008966 0.55612 9.53757
71 4H2W 5GP 0.00001586 0.52705 9.53757
72 3H0L ADP 0.005246 0.43559 9.62343
73 1SES AHX 0.0000003654 0.608 9.97625
74 1SES AMP 0.000003017 0.59827 9.97625
75 1DZK PRZ 0.008671 0.41204 10.1911
76 5L2J 70E 0.00132 0.46863 10.3333
77 5L2J 6UL 0.00123 0.46863 10.3333
78 3ERR AMP 0.000008171 0.47323 10.6343
79 2YKL NLD 0.002204 0.44446 10.6481
80 4RHS SIA SIA GAL 0.02107 0.40885 10.6557
81 1B7Y FYA 0.00001539 0.48336 11.1429
82 5VAD 91Y 0.000000003074 0.56911 11.4341
83 5VAD PRO 0.000006613 0.55761 11.4341
84 3REU ATP 0.0000002067 0.61117 11.5646
85 3A5Z KAA 0.0000001619 0.59453 12.0419
86 2J5B TYE 0.004773 0.45385 12.069
87 3EFS BTN 0.005874 0.40885 12.4464
88 2QL9 CIT 0.008009 0.4326 12.7168
89 3IWD M2T 0.02433 0.41186 12.9032
90 1WLE SRP 0.000001149 0.53442 13.3733
91 3UH0 TSB 0.000000004265 0.65468 13.913
92 4HWT 1B2 0.00004994 0.46916 15.2542
93 5ML3 DL3 0.01039 0.40592 15.4362
94 4HWS 1B3 0.0000000329 0.5042 17.0316
95 3HCH RSM 0.003171 0.45313 17.8082
96 1I7M CG 0.02325 0.40294 17.9104
97 3LQV ADE 0.02516 0.40607 17.9487
98 4H2V AMP 0.0000005128 0.55958 18.1818
99 2Z6C FMN 0.005726 0.40933 20.155
100 4CS4 AXZ 0.000001187 0.58857 20.438
101 4CS4 ANP 0.0000007369 0.58857 20.438
Pocket No.: 2; Query (leader) PDB : 2J3M; Ligand: PRI; Similar sites found: 114
This union binding pocket(no: 2) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1VBH PEP 0.03022 0.40338 1.04895
2 3BJU ATP 0.00008724 0.50742 1.53551
3 2ZTG A5A 0.00000001608 0.66362 1.57343
4 4WCX MET 0.001666 0.47761 1.66667
5 4L80 OXL 0.006842 0.43882 1.72414
6 3VSV XYP 0.01978 0.40802 1.92308
7 1E1O LYS 0.000001248 0.52939 1.98413
8 4MOB ADP 0.00708 0.43758 2.10843
9 3G2Y GF4 0.01825 0.41995 2.28137
10 5FWJ MMK 0.01574 0.41307 2.33546
11 1YQT ADP 0.02649 0.40678 2.41636
12 3HXU A5A 0.00000001957 0.62733 2.49433
13 1X54 4AD 0.0000008466 0.55618 2.53456
14 3T4L ZEA 0.001544 0.44009 2.59259
15 1P7T PYR 0.009877 0.41961 2.62238
16 3ACL 3F1 0.003465 0.42825 2.7027
17 2XGT NSS 0.0000001676 0.55458 2.75862
18 2CYB TYR 0.0157 0.42142 2.78638
19 1M5W DXP 0.01163 0.42432 2.88066
20 3E9I XAH 0.0000001358 0.59821 3.0426
21 3UPY FOM 0.02769 0.4091 3.14607
22 12AS AMP 0.00001277 0.51227 3.33333
23 5JJU AMP 0.0003168 0.40623 3.52941
24 4FE2 AIR 0.02156 0.40217 3.52941
25 1QH5 GSH 0.02132 0.41176 3.84615
26 2GK6 ADP 0.02735 0.40492 3.84615
27 5MZN ADP 0.03154 0.40167 3.84615
28 5T7I LAT NAG GAL 0.01662 0.41751 3.87097
29 1G51 AMO 0.000000872 0.56029 4.02098
30 2RHQ GAX 0.003551 0.40992 4.08163
31 3A16 PXO 0.003004 0.44322 4.28954
32 5F7U GLC GLC 0.01817 0.41255 4.37063
33 3QO8 SSA 0.0000009509 0.5916 4.53608
34 3DLG GWE 0.0239 0.40482 4.77273
35 4IAW LIZ 0.009702 0.41935 4.78723
36 1JQN DCO 0.008149 0.41889 4.8951
37 4D1J DGJ 0.0171 0.41474 5
38 3IES M24 0.008717 0.40425 5.08167
39 3QRC SCR 0.00007983 0.54289 5.09554
40 2WKQ FMN 0.008156 0.40422 5.12048
41 1B09 PC 0.006325 0.43101 5.33981
42 2G30 ALA ALA PHE 0.002809 0.46607 5.42636
43 4DS0 A2G GAL NAG FUC 0.02168 0.42046 5.52147
44 1KC7 PPR 0.02522 0.40246 5.59441
45 3NEM ATP 0.0000003693 0.6368 5.70776
46 3NEM AMO 0.0000001706 0.56218 5.70776
47 4R38 RBF 0.007189 0.40336 5.71429
48 2YMZ LAT 0.002066 0.46147 6.15385
49 2Y91 98J 0.01926 0.42687 6.41509
50 1N9L FMN 0.002614 0.42598 6.42202
51 5LIA 6XN 0.01341 0.41886 6.46853
52 5DG2 GAL GLC 0.001912 0.4671 6.66667
53 3OV6 MK0 0.006872 0.40379 6.80101
54 4I4S LAT 0.01242 0.42337 6.84932
55 1OFL NGK GCD 0.009474 0.42377 6.86071
56 3A5Y KAA 0.000000186 0.58301 6.95652
57 1QKQ MAN 0.0001871 0.53105 7.04225
58 3G1Z AMP 0.00000004348 0.68249 7.36196
59 5EW9 5VC 0.04252 0.40826 7.38007
60 2VDF OCT 0.002405 0.40532 7.50988
61 2PR5 FMN 0.007586 0.40561 7.57576
62 2CJA ATP 0.000007507 0.55045 7.85441
63 2QHS OCA 0.01036 0.41794 8.01688
64 3SAO DBH 0.02471 0.41438 8.125
65 2QV7 ADP 0.008762 0.40973 8.30861
66 2BVE PH5 0.004691 0.45914 8.40336
67 2CJ9 SSA 0.00000008277 0.56599 8.42912
68 4DSU BZI 0.003173 0.45993 8.46561
69 2QHV OC9 0.008039 0.42787 9.04762
70 5U98 1KX 0.00699 0.42719 9.09091
71 1LEK GLU GLN TYR LYS PHE TYR SER VAL 0.02186 0.40846 9.09091
72 4H2X G5A 0.0000001945 0.6073 9.53757
73 4H2W AMP 0.0000007821 0.59549 9.53757
74 3MF2 AMP 0.0000006648 0.56404 9.53757
75 4H2W 5GP 0.000007899 0.54289 9.53757
76 3JQ3 ADP 0.02262 0.40114 9.56284
77 3H0L ADP 0.00434 0.44141 9.62343
78 5BVE 4VG 0.02484 0.40278 9.69529
79 1SES AHX 0.0000004964 0.60454 9.97625
80 1SES AMP 0.000005427 0.58784 9.97625
81 1DZK PRZ 0.00883 0.41328 10.1911
82 5SVV FMN 0.006955 0.40398 10.219
83 5L2J 70E 0.0007666 0.476 10.3333
84 5L2J 6UL 0.0007118 0.476 10.3333
85 3ERR AMP 0.00002478 0.45373 10.6343
86 2YKL NLD 0.002203 0.44623 10.6481
87 4RHS SIA SIA GAL 0.01858 0.41445 10.6557
88 1B7Y FYA 0.0000256 0.48015 11.1429
89 5VAD 91Y 0.000000004155 0.57117 11.4341
90 5VAD PRO 0.000005202 0.56485 11.4341
91 3REU ATP 0.0000003317 0.60465 11.5646
92 2V0U FMN 0.007734 0.40524 11.6438
93 5EFW FMN 0.00966 0.40097 11.7241
94 3RZ3 U94 0.01407 0.40374 12.0219
95 3A5Z KAA 0.0000002908 0.57756 12.0419
96 2J5B TYE 0.004891 0.45559 12.069
97 4NG2 OHN 0.004746 0.40169 12.3894
98 3EFS BTN 0.004517 0.41552 12.4464
99 2QL9 CIT 0.005651 0.44354 12.7168
100 3IWD M2T 0.01353 0.42158 12.9032
101 1WLE SRP 0.0000013 0.52389 13.3733
102 4LZB URA 0.02896 0.40342 13.4454
103 3UH0 TSB 0.000000001657 0.66353 13.913
104 4EES FMN 0.005369 0.40883 14.7826
105 4HWT 1B2 0.00001335 0.4836 15.2542
106 4HWS 1B3 0.00000003008 0.51255 17.0316
107 3HCH RSM 0.004201 0.44825 17.8082
108 1I7M CG 0.02181 0.40587 17.9104
109 3LQV ADE 0.03093 0.40167 17.9487
110 4H2V AMP 0.0000004296 0.55284 18.1818
111 2Z6C FMN 0.004043 0.41764 20.155
112 4CS4 AXZ 0.000001675 0.57616 20.438
113 4CS4 ANP 0.000001178 0.57379 20.438
114 2Z6D FMN 0.007205 0.40659 29.2308
Pocket No.: 3; Query (leader) PDB : 2J3M; Ligand: PRI; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2j3m.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2J3M; Ligand: ATP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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