Receptor
PDB id Resolution Class Description Source Keywords
2NVA 1.8 Å EC: 4.1.1.19 THE X-RAY CRYSTAL STRUCTURE OF THE PARAMECIUM BURSARIA CHLOR ARGININE DECARBOXYLASE BOUND TO AGMATINE PARAMECIUM BURSARIA CHLORELLA VIRUS 1 ARGININE DECARBOXYLASE PLP TIM BARREL EUKARYOTIC ODC-LIKE
Ref.: X-RAY STRUCTURE OF PARAMECIUM BURSARIA CHLORELLA VI ARGININE DECARBOXYLASE: INSIGHT INTO THE STRUCTURAL FOR SUBSTRATE SPECIFICITY. BIOCHEMISTRY V. 46 2831 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PL2 A:2001;
B:2002;
C:2003;
D:2004;
E:2005;
F:2006;
G:2007;
H:2008;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
361.334 C13 H24 N5 O5 P [H]/N...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2NVA 1.8 Å EC: 4.1.1.19 THE X-RAY CRYSTAL STRUCTURE OF THE PARAMECIUM BURSARIA CHLOR ARGININE DECARBOXYLASE BOUND TO AGMATINE PARAMECIUM BURSARIA CHLORELLA VIRUS 1 ARGININE DECARBOXYLASE PLP TIM BARREL EUKARYOTIC ODC-LIKE
Ref.: X-RAY STRUCTURE OF PARAMECIUM BURSARIA CHLORELLA VI ARGININE DECARBOXYLASE: INSIGHT INTO THE STRUCTURAL FOR SUBSTRATE SPECIFICITY. BIOCHEMISTRY V. 46 2831 2007
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2NVA - PL2 C13 H24 N5 O5 P [H]/N=C(/N....
2 2NV9 - PLP C8 H10 N O6 P Cc1c(c(c(c....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2NVA - PL2 C13 H24 N5 O5 P [H]/N=C(/N....
2 2NV9 - PLP C8 H10 N O6 P Cc1c(c(c(c....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2NVA - PL2 C13 H24 N5 O5 P [H]/N=C(/N....
2 2NV9 - PLP C8 H10 N O6 P Cc1c(c(c(c....
3 1NJJ Ki = 8 mM GET C20 H40 N4 O10 C[C@H]([C@....
4 1F3T - PLP PUT n/a n/a
5 2OO0 Kd = 0.05 uM PLP C8 H10 N O6 P Cc1c(c(c(c....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PL2; Similar ligands found: 55
No: Ligand ECFP6 Tc MDL keys Tc
1 PL2 1 1
2 PLG 0.611111 0.794118
3 33P 0.558442 0.791045
4 P1T 0.545455 0.760563
5 EA5 0.542169 0.84058
6 IN5 0.526316 0.776119
7 PDA 0.525641 0.753623
8 PP3 0.525641 0.753623
9 PDD 0.525641 0.753623
10 IK2 0.518987 0.760563
11 QLP 0.518072 0.802817
12 PE1 0.517647 0.865672
13 PMP 0.514286 0.84127
14 PLS 0.5125 0.794118
15 2BO 0.5125 0.753623
16 2BK 0.5125 0.753623
17 5PA 0.5125 0.785714
18 TLP 0.5125 0.753623
19 HEY 0.511905 0.774648
20 C6P 0.506173 0.794118
21 PPD 0.506173 0.794118
22 ILP 0.506024 0.757143
23 ORX 0.505882 0.865672
24 PLA 0.5 0.75
25 PY5 0.5 0.8
26 PXP 0.5 0.75
27 LPI 0.5 0.791667
28 PY6 0.494118 0.802817
29 PMH 0.493827 0.65
30 PL4 0.488636 0.865672
31 N5F 0.488372 0.838235
32 PSZ 0.488372 0.693333
33 3LM 0.488372 0.72973
34 7XF 0.488095 0.823529
35 PDG 0.488095 0.823529
36 CBA 0.488095 0.722222
37 PGU 0.488095 0.823529
38 GT1 0.486111 0.701493
39 PMG 0.482353 0.777778
40 76U 0.476744 0.811594
41 7TS 0.470588 0.619048
42 PL8 0.466667 0.727273
43 9YM 0.465909 0.797101
44 DCS 0.465116 0.666667
45 KAM 0.461538 0.811594
46 7B9 0.456522 0.756757
47 RW2 0.455556 0.763889
48 PXG 0.455556 0.742857
49 EQJ 0.445652 0.878788
50 5DK 0.445652 0.878788
51 AQ3 0.427083 0.75
52 PPG 0.419355 0.838235
53 PLP 2KZ 0.418605 0.714286
54 DOW 0.407407 0.767123
55 PLR 0.402778 0.661538
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 2nva.bio2) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 2PLK P3D 45.6989
Pocket No.: 2; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2nva.bio2) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2nva.bio4) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2nva.bio4) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2nva.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2nva.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2nva.bio3) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2NVA; Ligand: PL2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2nva.bio3) has 27 residues
No: Leader PDB Ligand Sequence Similarity
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