Receptor
PDB id Resolution Class Description Source Keywords
2P5B 1.99 Å EC: 1.14.11.- THE COMPLEX STRUCTURE OF JMJD2A AND TRIMETHYLATED H3K36 PEPT HOMO SAPIENS JMJD2A JMJC DOMAIN HISTONE DEMETHYLASE METAL BINDING PROT
Ref.: STRUCTURAL BASIS OF THE RECOGNITION OF A METHYLATED TAIL BY JMJD2A. PROC.NATL.ACAD.SCI.USA V. 104 10818 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FE A:352;
B:352;
Part of Protein;
Part of Protein;
none;
none;
submit data
55.845 Fe [Fe+3...
OGA A:401;
B:402;
Valid;
Valid;
none;
none;
submit data
147.086 C4 H5 N O5 C(C(=...
OXY A:501;
A:502;
B:503;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
31.999 O2 O=O
ZN A:351;
B:351;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2P5B 1.99 Å EC: 1.14.11.- THE COMPLEX STRUCTURE OF JMJD2A AND TRIMETHYLATED H3K36 PEPT HOMO SAPIENS JMJD2A JMJC DOMAIN HISTONE DEMETHYLASE METAL BINDING PROT
Ref.: STRUCTURAL BASIS OF THE RECOGNITION OF A METHYLATED TAIL BY JMJD2A. PROC.NATL.ACAD.SCI.USA V. 104 10818 2007
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 31 families.
1 2PXJ - OGA C4 H5 N O5 C(C(=O)O)N....
2 2P5B - OGA C4 H5 N O5 C(C(=O)O)N....
70% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 11 families.
1 2YBP - 2HG C5 H8 O5 C(CC(=O)O)....
2 2YBS - S2G C5 H8 O5 C(CC(=O)O)....
3 2OS2 - OGA C4 H5 N O5 C(C(=O)O)N....
4 2Q8E - OGA C4 H5 N O5 C(C(=O)O)N....
5 2Q8D - SIN C4 H6 O4 C(CC(=O)O)....
6 2PXJ - OGA C4 H5 N O5 C(C(=O)O)N....
7 2P5B - OGA C4 H5 N O5 C(C(=O)O)N....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 2YBP - 2HG C5 H8 O5 C(CC(=O)O)....
2 2YBS - S2G C5 H8 O5 C(CC(=O)O)....
3 2OS2 - OGA C4 H5 N O5 C(C(=O)O)N....
4 2Q8E - OGA C4 H5 N O5 C(C(=O)O)N....
5 2Q8D - SIN C4 H6 O4 C(CC(=O)O)....
6 2PXJ - OGA C4 H5 N O5 C(C(=O)O)N....
7 2P5B - OGA C4 H5 N O5 C(C(=O)O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OGA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 OGA 1 1
2 AAC 0.461538 0.827586
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2P5B; Ligand: OGA; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 2p5b.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 4IGQ THR M3L GLN 42.3295
2 5IVE 6E8 47.8788
Pocket No.: 2; Query (leader) PDB : 2P5B; Ligand: OGA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2p5b.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback