Receptor
PDB id Resolution Class Description Source Keywords
2UVJ 1.8 Å NON-ENZYME: BINDING STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE BINDING PROTEIN FROM YERSINIA ENTEROCOLITICA IN COMPLEX WITH T RIGALACTURONIC ACID YERSINIA ENTEROCOLITICA YERSINIA ENTEROCOLITICA PERIPLASMIC BINDING PROTEIN TOGB PECTIN DEGRADATION TRIGALACTURONIC ACID SUGAR-BINDING PROTEIN
Ref.: SPECIFIC RECOGNITION OF SATURATED AND 4,5-UNSATURATED HEXURONATE SUGARS BY A PERIPLASMIC BINDING PROTEIN INVOLVED IN PECTIN CATABOLISM. J.MOL.BIOL. V. 369 759 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADA ADA ADA A:1431;
Valid;
none;
Kd = 5.3 uM
527.364 n/a O=C([...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2UVJ 1.8 Å NON-ENZYME: BINDING STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE BINDING PROTEIN FROM YERSINIA ENTEROCOLITICA IN COMPLEX WITH T RIGALACTURONIC ACID YERSINIA ENTEROCOLITICA YERSINIA ENTEROCOLITICA PERIPLASMIC BINDING PROTEIN TOGB PECTIN DEGRADATION TRIGALACTURONIC ACID SUGAR-BINDING PROTEIN
Ref.: SPECIFIC RECOGNITION OF SATURATED AND 4,5-UNSATURATED HEXURONATE SUGARS BY A PERIPLASMIC BINDING PROTEIN INVOLVED IN PECTIN CATABOLISM. J.MOL.BIOL. V. 369 759 2007
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2UVI Kd = 310.5 uM UNG C12 H16 O12 C1=C(O[C@@....
2 2UVJ Kd = 5.3 uM ADA ADA ADA n/a n/a
3 2UVH Kd = 84.4 uM ADA ADA n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2UVI Kd = 310.5 uM UNG C12 H16 O12 C1=C(O[C@@....
2 2UVJ Kd = 5.3 uM ADA ADA ADA n/a n/a
3 2UVH Kd = 84.4 uM ADA ADA n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 2UVI Kd = 310.5 uM UNG C12 H16 O12 C1=C(O[C@@....
2 2UVJ Kd = 5.3 uM ADA ADA ADA n/a n/a
3 2UVH Kd = 84.4 uM ADA ADA n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADA ADA ADA; Similar ligands found: 11
No: Ligand ECFP6 Tc MDL keys Tc
1 ADA ADA ADA 1 1
2 ADA ADA ADA ADA ADA ADA 0.625 0.857143
3 ADA ADA ADA ADA ADA 0.625 0.857143
4 GTR ADA ADA 0.625 0.857143
5 ADA ADA ADA ADA 0.625 0.857143
6 ADA ADA 0.5625 0.828571
7 RAM ADA RAM 0.472973 0.72973
8 GCU XYP 0.457143 0.868421
9 LGU MAV BEM 0.447368 0.942857
10 RAM GTR RAM GTR RAM GTR 0.4375 0.810811
11 GCV XYP XYP 0.402299 0.868421
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2UVJ; Ligand: ADA ADA ADA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2uvj.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
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