Receptor
PDB id Resolution Class Description Source Keywords
2VJJ 1.59 Å NON-ENZYME: BINDING TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE SALMONELLA PHAGE HK620 VIRAL PROTEIN ENDO-N-ACETYLGLUCOSAMINIDASE VIRAL ADHESION RIGHT-HANDED PARALLEL BETA-HELIX HYDROLASE TAILSPIKE
Ref.: CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHAGE HK620 TAILSPIKE: PODOVIRAL TAILSPIKE ENDOGLYCOSIDASE MODU EVOLUTIONARILY RELATED. MOL.MICROBIOL. V. 69 303 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:710;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
CL A:711;
Invalid;
none;
submit data
35.453 Cl [Cl-]
GOL A:713;
A:714;
A:715;
A:716;
A:717;
A:718;
A:719;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
K A:712;
Invalid;
none;
submit data
39.098 K [K+]
RAM GLC GAL NAG NAG GLC A:720;
Valid;
none;
submit data n/a n/a n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6G0X 1.41 Å NON-ENZYME: BINDING TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX PENTASACCHARIDE SALMONELLA PHAGE HK620 BETA HELIX PROTEIN-CARBOHYDRATE COMPLEX PECTIN LYASE FOLDHYDROLASE
Ref.: SOLVENT NETWORKS TUNE THERMODYNAMICS OF OLIGOSACCHA COMPLEX FORMATION IN AN EXTENDED PROTEIN BINDING SI J. AM. CHEM. SOC. V. 140 10447 2018
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 6G0X - RAM GLC GLA NAG NDG NAG n/a n/a
2 6GVR - RAM GLC GLA NDG NAG n/a n/a
3 6GVP - RAM GLC GLA NDG NAG GLC n/a n/a
4 2VJJ - RAM GLC GAL NAG NAG GLC n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 6G0X - RAM GLC GLA NAG NDG NAG n/a n/a
2 6GVR - RAM GLC GLA NDG NAG n/a n/a
3 6GVP - RAM GLC GLA NDG NAG GLC n/a n/a
4 2VJJ - RAM GLC GAL NAG NAG GLC n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 6G0X - RAM GLC GLA NAG NDG NAG n/a n/a
2 6GVR - RAM GLC GLA NDG NAG n/a n/a
3 6GVP - RAM GLC GLA NDG NAG GLC n/a n/a
4 2VJJ - RAM GLC GAL NAG NAG GLC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RAM GLC GAL NAG NAG GLC; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6G0X; Ligand: RAM GLC GLA NAG NDG NAG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6g0x.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
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