Receptor
PDB id Resolution Class Description Source Keywords
2VZQ 1.7 Å EC: 3.-.-.- C-TERMINAL CBM35 FROM AMYCOLATOPSIS ORIENTALIS EXO-CHITOSANA COMPLEX WITH DIGALACTURONIC ACID AMYCOLATOPSIS ORIENTALIS HYDROLASE CBM FAMILY 35 DIGALACTURONIC ACID CALCIUM
Ref.: EVIDENCE THAT FAMILY 35 CARBOHYDRATE BINDING MODULE CONSERVED SPECIFICITY BUT DIVERGENT FUNCTION. PROC.NATL.ACAD.SCI.USA V. 106 3065 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:1129;
A:1130;
B:1128;
B:1129;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
40.078 Ca [Ca+2...
EDO A:1131;
A:1132;
B:1130;
B:1131;
B:1132;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
 submit data
62.068 C2 H6 O2 C(CO)...
NA B:1134;
 Invalid;
 none;
 submit data
22.99 Na [Na+]
GTR AQA D:1;
C:1;
 Valid;
Valid;
 none;
none;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2VZR 1.95 Å EC: 3.-.-.- C-TERMINAL CBM35 FROM AMYCOLATOPSIS ORIENTALIS EXO-CHITOSANA COMPLEX WITH GLUCURONIC ACID AMYCOLATOPSIS ORIENTALIS HYDROLASE CBM FAMILY 35 CSXA GLUCURONIC ACID
Ref.: EVIDENCE THAT FAMILY 35 CARBOHYDRATE BINDING MODULE CONSERVED SPECIFICITY BUT DIVERGENT FUNCTION. PROC.NATL.ACAD.SCI.USA V. 106 3065 2009
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 2VZR Ka = 19000 M^-1 GCU C6 H10 O7 [C@@H]1([C....
2 2VZQ - GTR AQA n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 2VZR Ka = 19000 M^-1 GCU C6 H10 O7 [C@@H]1([C....
2 2VZQ - GTR AQA n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 2W47 - GTR AQA n/a n/a
2 2VZR Ka = 19000 M^-1 GCU C6 H10 O7 [C@@H]1([C....
3 2VZQ - GTR AQA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GTR AQA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: GTR AQA; Similar ligands found: 9
No: Ligand Similarity coefficient
1 GTR AQA 1.0000
2 GTR ADA 0.9586
3 ADA AQA 0.9473
4 ADA ADA 0.9458
5 GAL GLA 0.9158
6 GLA GLA 0.9019
7 RAM GAD 0.8846
8 GLC GLC 0.8806
9 EGA GLA 0.8806
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2VZR; Ligand: GCU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2vzr.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2VZR; Ligand: GCU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2vzr.bio2) has 7 residues
No: Leader PDB Ligand Sequence Similarity
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