Receptor
PDB id Resolution Class Description Source Keywords
2WMC 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E FROM PI SATIVUM PISUM SATIVUM BIOSYNTHETIC PROTEIN INITIATION FACTOR PROTEIN BIOSYNTHESISBM1 GENE RNA-BINDING PISUM SATIVUM
Ref.: STRUCTURE-BASED MUTATIONAL ANALYSIS OF EIF4E IN REL SBM1 RESISTANCE TO PEA SEED-BORNE MOSAIC VIRUS IN P PLOS ONE V. 6 E873 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MGP A:500;
B:500;
C:500;
D:500;
E:500;
F:500;
G:500;
H:500;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
538.215 C11 H19 N5 O14 P3 C[n+]...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2WMC 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E FROM PI SATIVUM PISUM SATIVUM BIOSYNTHETIC PROTEIN INITIATION FACTOR PROTEIN BIOSYNTHESISBM1 GENE RNA-BINDING PISUM SATIVUM
Ref.: STRUCTURE-BASED MUTATIONAL ANALYSIS OF EIF4E IN REL SBM1 RESISTANCE TO PEA SEED-BORNE MOSAIC VIRUS IN P PLOS ONE V. 6 E873 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
2 2IDV - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 185 families.
1 1IPB - GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
2 1IPC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
3 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
4 1L8B Kd = 0.14 uM MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
5 5J5Y Ka = 82.8 M^-1 6G6 C13 H21 Cl2 N5 O16 P4 C[n+]1cn(c....
6 4TPW Kd = 19.5 uM 33R C18 H12 Cl2 N4 O4 S c1ccc(c(c1....
7 4TQB - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
8 1EJ1 - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
9 4TQC - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
10 5J5O Ka = 102.8 M^-1 6G0 C11 H20 N5 O17 P4 C[n+]1cn(c....
11 2IDV - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MGP; Similar ligands found: 80
No: Ligand ECFP6 Tc MDL keys Tc
1 MGP 1 1
2 6G0 0.986667 1
3 G7M 0.794872 0.987013
4 GTG 0.741935 0.974684
5 GTA 0.71875 0.974684
6 MG7 0.653846 0.884615
7 GTP 0.619565 0.961039
8 MGO 0.619565 0.901235
9 GDP 7MG 0.592233 0.949367
10 GP3 0.55914 0.936709
11 GDP 0.553191 0.961039
12 GSP 0.525253 0.91358
13 MGQ 0.514852 0.925
14 GAV 0.5 0.925
15 G1R 0.5 0.948718
16 GNH 0.5 0.948718
17 MGV 0.5 0.880952
18 01G 0.495327 0.870588
19 GNP 0.49505 0.936709
20 ATP 0.494737 0.884615
21 AQP 0.489583 0.884615
22 5FA 0.489583 0.884615
23 GCP 0.485149 0.936709
24 G5P 0.477477 0.936709
25 7DT 0.474227 0.871795
26 G2R 0.471698 0.925
27 5GP 0.46875 0.948052
28 G 0.46875 0.948052
29 ITT 0.46875 0.835443
30 G3A 0.468468 0.936709
31 0O2 0.46729 0.948052
32 Y9Z 0.463636 0.892857
33 GDC 0.463636 0.925
34 GKE 0.463636 0.925
35 GDD 0.463636 0.925
36 GMV 0.460784 0.936709
37 GFB 0.459459 0.949367
38 GDR 0.459459 0.949367
39 DGT 0.456311 0.888889
40 GPD 0.45614 0.914634
41 6CK 0.455357 0.902439
42 G2P 0.451923 0.925
43 AP5 0.447917 0.860759
44 B4P 0.447917 0.860759
45 JB2 0.447368 0.949367
46 GKD 0.447368 0.925
47 8GT 0.445545 0.843373
48 NGD 0.445378 0.949367
49 GPG 0.440367 0.925
50 BA3 0.4375 0.860759
51 GH3 0.433962 0.935897
52 ADP 0.43299 0.884615
53 GP2 0.431373 0.925
54 GDX 0.431034 0.936709
55 MGT 0.428571 0.837209
56 RGT 0.428571 0.875
57 YGP 0.428571 0.891566
58 IDP 0.425743 0.935065
59 A4P 0.425 0.83908
60 JB3 0.425 0.9375
61 CAG 0.424 0.894118
62 25L 0.423423 0.873418
63 GDP MG 0.423077 0.9125
64 GDP BEF 0.419048 0.890244
65 A2D 0.416667 0.860759
66 GCP G 0.416667 0.924051
67 7DD 0.414141 0.871795
68 6AD 0.413462 0.855422
69 AGS 0.411765 0.841463
70 SAP 0.411765 0.841463
71 G3D 0.411215 0.948052
72 G2Q 0.409091 0.925
73 BEF GDP 0.407407 0.879518
74 GTP MG 0.407407 0.9125
75 ALF 5GP 0.40566 0.879518
76 TPG 0.40458 0.853933
77 ANP 0.403846 0.8625
78 ACQ 0.403846 0.8625
79 G4P 0.40367 0.948052
80 2MD 0.4 0.860465
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 3
This union binding pocket(no: 1) in the query (biounit: 2wmc.bio4) has 8 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3O84 HTJ 0.01733 0.40148 3.37079
2 2FK8 SAM 0.02637 0.40062 3.37079
3 1KPH SAH 0.01137 0.41586 10.6742
Pocket No.: 2; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 27
This union binding pocket(no: 2) in the query (biounit: 2wmc.bio6) has 9 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4DR9 BB2 0.01386 0.43169 None
2 3IA4 NDP 0.04973 0.40172 None
3 3UWB BB2 0.02618 0.41997 1.2987
4 1N7G NDP 0.03517 0.44725 2.24719
5 4JE7 BB2 0.01241 0.43656 2.80899
6 1RZM E4P 0.003443 0.42852 3.37079
7 3FXU TSU 0.03363 0.40504 3.37079
8 2CDU FAD 0.0257 0.42721 3.93258
9 1KY8 NAP 0.03632 0.42443 3.93258
10 4K30 NLG 0.01671 0.4015 4.375
11 3QVL 5HY 0.01326 0.41908 4.49438
12 2QTZ NAP 0.04425 0.40487 4.49438
13 1S17 GNR 0.02109 0.42133 5.61798
14 1QRD FAD 0.02913 0.41808 6.74157
15 4G74 FAD 0.04042 0.40838 7.30337
16 4X7G 3Y8 0.01464 0.43662 7.86517
17 3M6P BB2 0.01647 0.42785 8.42697
18 4BJ8 BTN 0.005103 0.43499 8.73016
19 5D9O BGC BGC BGC BGC 0.04318 0.4134 8.98876
20 3AB1 FAD 0.0239 0.41758 9.55056
21 3JSX FAD 0.03398 0.41913 10.6742
22 1MDB AMP DBH 0.0221 0.40772 12.3596
23 4NMC 2OP 0.04485 0.40029 12.3596
24 4NMC FAD 0.0464 0.40029 12.3596
25 1RL4 BRR 0.01501 0.41198 12.9213
26 3R5Y F42 0.02882 0.40274 14.2857
27 1MO9 KPC 0.02726 0.43472 19.6629
Pocket No.: 3; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 4
This union binding pocket(no: 3) in the query (biounit: 2wmc.bio7) has 7 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1EZ0 NAP 0.003629 0.45166 3.37079
2 5G3U FDA 0.02425 0.41394 5.05618
3 1TLL NAP 0.04041 0.42078 9.55056
4 3LZW FAD 0.02366 0.40973 9.55056
Pocket No.: 4; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 13
This union binding pocket(no: 4) in the query (biounit: 2wmc.bio2) has 7 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1XNK XS2 0.007452 0.42269 2.80899
2 5K8P 6R8 0.01856 0.41565 3.37079
3 2IHK CSF 0.00222 0.45536 3.93258
4 3HXU A5A 0.005452 0.43849 3.93258
5 1OC2 NAD 0.01829 0.40996 5.05618
6 1KEW NAD 0.01877 0.43533 5.61798
7 1KEW TYD 0.01889 0.43343 5.61798
8 1R6D DAU 0.0361 0.4007 5.61798
9 1R6D NAD 0.03692 0.4007 5.61798
10 3VYW SAM 0.009037 0.42849 6.17978
11 1PG4 COA 0.04725 0.40742 8.98876
12 1OLM VTQ 0.03493 0.4053 8.98876
13 1B66 BIO 0.02416 0.41176 12.1429
Pocket No.: 5; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 7
This union binding pocket(no: 5) in the query (biounit: 2wmc.bio3) has 7 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4DQL NAP 0.03644 0.44082 2.80899
2 1KYQ NAD 0.03393 0.41805 2.80899
3 2C29 DQH 0.02956 0.40767 4.49438
4 1M2X MCO 0.01374 0.4235 6.74157
5 1F20 NAP 0.01272 0.44675 10.6742
6 3KA2 2NC 0.02428 0.43145 14.0449
7 3FGC FMN 0.01338 0.40723 14.6067
Pocket No.: 6; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 18
This union binding pocket(no: 6) in the query (biounit: 2wmc.bio8) has 10 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1N5S ADL 0.01248 0.425 None
2 3AMN CBK 0.02364 0.41088 2.80899
3 3EEB IHP 0.01553 0.40902 2.80899
4 3M3R BCD 0.04837 0.4051 3.37079
5 1TT8 PHB 0.03293 0.41015 3.65854
6 4QA8 PJZ 0.01017 0.427 3.93258
7 1XPK HMG 0.01256 0.42548 3.93258
8 1XPM HMG 0.01945 0.41616 3.93258
9 1AJ0 SAN 0.0311 0.40204 4.49438
10 4OCT AKG 0.01408 0.4134 5.05618
11 1AFS NAP 0.03776 0.40074 5.61798
12 3GNE FLC 0.007801 0.42297 7.86517
13 3FW9 SLX 0.0124 0.41605 8.42697
14 4MNS 2AX 0.03239 0.42714 8.80503
15 3ILR SGN IXD 0.04336 0.40605 8.98876
16 1VA6 ADP 0.01971 0.43764 9.55056
17 1VA6 P2S 0.02137 0.43764 9.55056
18 4RFR RHN 0.01295 0.4199 12.9213
Pocket No.: 7; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 4
This union binding pocket(no: 7) in the query (biounit: 2wmc.bio5) has 8 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5TPR NAD 0.009432 0.43084 2.80899
2 3GF4 UPG 0.02252 0.41528 3.93258
3 4H6U ACO 0.01785 0.41877 5.61798
4 3ORF NAD 0.04079 0.40683 6.74157
Pocket No.: 8; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found: 3
This union binding pocket(no: 8) in the query (biounit: 2wmc.bio1) has 8 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3QVP FAD 0.01729 0.41979 4.49438
2 5IN4 GDP 0.02551 0.45203 15.7303
3 5IN4 NAP 0.02618 0.45203 15.7303
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