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Receptor
PDB id Resolution Class Description Source Keywords
2WMC 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E FROM PI SATIVUM PISUM SATIVUM BIOSYNTHETIC PROTEIN INITIATION FACTOR PROTEIN BIOSYNTHESISBM1 GENE RNA-BINDING PISUM SATIVUM
Ref.: STRUCTURE-BASED MUTATIONAL ANALYSIS OF EIF4E IN REL SBM1 RESISTANCE TO PEA SEED-BORNE MOSAIC VIRUS IN P PLOS ONE V. 6 E873 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MGP A:500;
B:500;
C:500;
D:500;
E:500;
F:500;
G:500;
H:500;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
538.215 C11 H19 N5 O14 P3 C[n+]...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2WMC 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E FROM PI SATIVUM PISUM SATIVUM BIOSYNTHETIC PROTEIN INITIATION FACTOR PROTEIN BIOSYNTHESISBM1 GENE RNA-BINDING PISUM SATIVUM
Ref.: STRUCTURE-BASED MUTATIONAL ANALYSIS OF EIF4E IN REL SBM1 RESISTANCE TO PEA SEED-BORNE MOSAIC VIRUS IN P PLOS ONE V. 6 E873 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
2 2IDV - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
50% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1IPB - GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
2 1IPC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
3 2WMC - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
4 5OSX ic50 = 0.285 uM AKW C21 H30 N10 O16 P3 S2 C[n+]1cn(c....
5 1L8B Kd = 0.14 uM MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
6 5J5Y Ka = 82.8 M^-1 6G6 C13 H21 Cl2 N5 O16 P4 C[n+]1cn(c....
7 4TPW Kd = 19.5 uM 33R C18 H12 Cl2 N4 O4 S c1ccc(c(c1....
8 4TQB - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
9 1EJ1 - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
10 4TQC - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
11 5J5O Ka = 102.8 M^-1 6G0 C11 H20 N5 O17 P4 C[n+]1cn(c....
12 2IDV - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MGP; Similar ligands found: 81
No: Ligand ECFP6 Tc MDL keys Tc
1 MGP 1 1
2 6G0 0.986667 1
3 G7M 0.794872 0.987013
4 GTG 0.741935 0.974684
5 GTA 0.71875 0.974684
6 MG7 0.653846 0.884615
7 GTP 0.619565 0.961039
8 MGO 0.619565 0.901235
9 GDP 7MG 0.592233 0.949367
10 GP3 0.55914 0.936709
11 GDP 0.553191 0.961039
12 GSP 0.525253 0.91358
13 MGQ 0.514852 0.925
14 G1R 0.5 0.948718
15 MGV 0.5 0.880952
16 GAV 0.5 0.925
17 GNH 0.5 0.948718
18 01G 0.495327 0.870588
19 9GM 0.49505 0.936709
20 GNP 0.49505 0.936709
21 HFD 0.494845 0.841463
22 HEJ 0.494737 0.884615
23 ATP 0.494737 0.884615
24 AQP 0.489583 0.884615
25 5FA 0.489583 0.884615
26 GCP 0.485149 0.936709
27 G5P 0.477477 0.936709
28 7DT 0.474227 0.871795
29 G2R 0.471698 0.925
30 5GP 0.46875 0.948052
31 G 0.46875 0.948052
32 ITT 0.46875 0.835443
33 G3A 0.468468 0.936709
34 0O2 0.46729 0.948052
35 AJQ 0.466102 0.926829
36 GKE 0.463636 0.925
37 GDC 0.463636 0.925
38 GDD 0.463636 0.925
39 Y9Z 0.463636 0.892857
40 GMV 0.460784 0.936709
41 GFB 0.459459 0.949367
42 GDR 0.459459 0.949367
43 DGT 0.456311 0.888889
44 GPD 0.45614 0.914634
45 6CK 0.455357 0.902439
46 G2P 0.451923 0.925
47 AP5 0.447917 0.860759
48 B4P 0.447917 0.860759
49 GKD 0.447368 0.925
50 JB2 0.447368 0.949367
51 8GT 0.445545 0.843373
52 NGD 0.445378 0.949367
53 GPG 0.440367 0.925
54 BA3 0.4375 0.860759
55 GH3 0.433962 0.935897
56 ADP 0.43299 0.884615
57 6YZ 0.432692 0.8625
58 GP2 0.431373 0.925
59 GDX 0.431034 0.936709
60 YGP 0.428571 0.891566
61 MGT 0.428571 0.837209
62 RGT 0.428571 0.875
63 IDP 0.425743 0.935065
64 JB3 0.425 0.9375
65 A4P 0.425 0.83908
66 CAG 0.424 0.894118
67 25L 0.423423 0.873418
68 A2D 0.416667 0.860759
69 7DD 0.414141 0.871795
70 6AD 0.413462 0.855422
71 SAP 0.411765 0.841463
72 AGS 0.411765 0.841463
73 G3D 0.411215 0.948052
74 G2Q 0.409091 0.925
75 ALF 5GP 0.40566 0.879518
76 TPG 0.40458 0.853933
77 ACQ 0.403846 0.8625
78 ANP 0.403846 0.8625
79 G4P 0.40367 0.948052
80 C1Z 0.401786 0.948052
81 2MD 0.4 0.860465
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 10
This union binding pocket(no: 1) in the query (biounit: 2wmc.bio4) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 2QM9 TDZ 1.93548
2 3O84 HTJ 3.37079
3 2FK8 SAM 3.37079
4 5KD6 6C7 4.49438
5 6C8R SAH 5.05618
6 4HK8 XYP XYP XYP XYP XYP XYP 8.98876
7 5D9O BGC BGC BGC BGC 8.98876
8 1T57 FMN 8.98876
9 1KPH SAH 10.6742
10 1KPG SAH 10.6742
Pocket No.: 2; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 51
This union binding pocket(no: 2) in the query (biounit: 2wmc.bio6) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4NAT ADP None
2 4DR9 BB2 None
3 1G27 BB1 None
4 4NAT 2W5 None
5 3IA4 NDP None
6 3UWB BB2 1.2987
7 5A04 NDP 1.68539
8 5A04 BGC 1.68539
9 1N7G NDP 2.24719
10 4JE7 BB2 2.80899
11 1RZM E4P 3.37079
12 5WM2 AMP 3.37079
13 5WM2 SAL 3.37079
14 3FXU TSU 3.37079
15 1VAY AZA 3.37079
16 2CDU FAD 3.93258
17 1KY8 NAP 3.93258
18 4K30 NLG 4.375
19 5AB0 2X0 7GA LYS HIS HIS ALA PHE SER PHE LYN 4.49438
20 3QVL 5HY 4.49438
21 2QTZ NAP 4.49438
22 4EOX 0S5 5.05618
23 1PJS NAD 5.61798
24 5KMS NAD 5.61798
25 5KMS FAD 5.61798
26 1S17 GNR 5.61798
27 5Q0F 9FA 6.74157
28 5WB6 9ZM 6.74157
29 1QRD FAD 6.74157
30 5MWY YNU 7.30337
31 4X7G 3Y8 7.86517
32 3M6P BB2 8.42697
33 4BJ8 BTN 8.73016
34 5MTE BB2 9.48905
35 3AB1 FAD 9.55056
36 5NA1 FAD 10.1124
37 3JSX FAD 10.6742
38 5VN0 NAI 11.236
39 5VN0 FAD 11.236
40 1MDB AMP DBH 12.3596
41 4NMC FAD 12.3596
42 4NMC 2OP 12.3596
43 1RL4 BRR 12.9213
44 5TS5 FAD 13.4831
45 4S1D 41M 14.0449
46 3R5Y F42 14.2857
47 3E3U NVC 15.1685
48 5IN4 NAP 15.7303
49 5JWC FAD 15.7303
50 1MO9 KPC 19.6629
51 1MO9 FAD 19.6629
Pocket No.: 3; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 2wmc.bio7) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 5J32 IPM 2.80899
2 1EZ0 NAP 3.37079
3 4UNR QZE 3.93258
4 5G3U FDA 5.05618
5 6F05 GTS 5.05618
6 1TLL NAP 9.55056
7 3LZW FAD 9.55056
8 5A9A UTP 17.4157
Pocket No.: 4; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 17
This union binding pocket(no: 4) in the query (biounit: 2wmc.bio2) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 3KH5 AMP None
2 1XNK XS2 2.80899
3 5K8P 6R8 3.37079
4 2IHK CSF 3.93258
5 3HXU A5A 3.93258
6 1OC2 TDX 5.05618
7 1OC2 NAD 5.05618
8 1KEW TYD 5.61798
9 1KEW NAD 5.61798
10 1R6D NAD 5.61798
11 1R6D DAU 5.61798
12 3VYW SAM 6.17978
13 4UTG ANP 6.17978
14 1PG4 PRX 8.98876
15 1PG4 COA 8.98876
16 1OLM VTQ 8.98876
17 1B66 BIO 12.1429
Pocket No.: 5; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 11
This union binding pocket(no: 5) in the query (biounit: 2wmc.bio3) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 4DQL NAP 2.80899
2 4ZDC CO8 2.80899
3 1KYQ NAD 2.80899
4 2C29 DQH 4.49438
5 5TVJ COA 6.17978
6 5TVJ 7LF 6.17978
7 1M2X MCO 6.74157
8 4NS3 NAD 9.55056
9 4CQM NAP 10.1124
10 1F20 NAP 10.6742
11 3FGC FMN 14.6067
Pocket No.: 6; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 30
This union binding pocket(no: 6) in the query (biounit: 2wmc.bio8) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1N5S ADL None
2 5IH1 GDP 2.24719
3 5IH1 6BQ 2.24719
4 5O9W AKG 2.80899
5 3AMN CBI 2.80899
6 3AMN CBK 2.80899
7 3EEB IHP 2.80899
8 5LUN OGA 3.37079
9 5LUN ARG 3.37079
10 1TT8 PHB 3.65854
11 1XPM HMG 3.93258
12 4QA8 PJZ 3.93258
13 1XPK HMG 3.93258
14 5KD6 LBU 4.49438
15 1AJ0 PH2 4.49438
16 1AJ0 SAN 4.49438
17 4OCT AKG 5.05618
18 1AFS NAP 5.61798
19 2OBD 2OB 6.74157
20 1KQN NAD 6.74157
21 2ZHL NAG GAL GAL NAG 6.75676
22 2QO4 CHD 7.14286
23 3GNE FLC 7.86517
24 3FW9 SLX 8.42697
25 4MNS 2AX 8.80503
26 3ILR SGN IXD 8.98876
27 1VA6 ADP 9.55056
28 1VA6 P2S 9.55056
29 4RFR RHN 12.9213
30 5Y72 DST 19.1011
Pocket No.: 7; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 6
This union binding pocket(no: 7) in the query (biounit: 2wmc.bio5) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 5TPR NAD 2.80899
2 3GF4 UPG 3.93258
3 3OJF IMJ 3.93258
4 4H6U ACO 5.61798
5 3ORF NAD 6.74157
6 3MQG UDP UDP 10.6742
Pocket No.: 8; Query (leader) PDB : 2WMC; Ligand: MGP; Similar sites found with APoc: 3
This union binding pocket(no: 8) in the query (biounit: 2wmc.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 3QVP FAD 4.49438
2 5IN4 6CK 15.7303
3 5IN4 GDP 15.7303
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