Receptor
PDB id Resolution Class Description Source Keywords
2X34 1.9 Å NON-ENZYME: BINDING STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPH DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN SACCHAROPHAGUS DEGRADANS CARBOHYDRATE-BINDING PROTEIN OXIDOREDUCTION MARINE BACTERIPOLYISOPRENOID TRANSPORT
Ref.: STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS DEGRADANS IMPLICATED IN PLANT CELL W BREAKDOWN FEBS LETT. V. 584 1577 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
UQ8 A:7575;
B:7576;
 Valid;
Valid;
 none;
none;
 submit data
727.109 C49 H74 O4 CC1=C...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2X34 1.9 Å NON-ENZYME: BINDING STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPH DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN SACCHAROPHAGUS DEGRADANS CARBOHYDRATE-BINDING PROTEIN OXIDOREDUCTION MARINE BACTERIPOLYISOPRENOID TRANSPORT
Ref.: STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS DEGRADANS IMPLICATED IN PLANT CELL W BREAKDOWN FEBS LETT. V. 584 1577 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2X34 - UQ8 C49 H74 O4 CC1=C(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2X34 - UQ8 C49 H74 O4 CC1=C(C(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 2X34 - UQ8 C49 H74 O4 CC1=C(C(=O....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: UQ8; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 UQ9 1 1
2 UQ7 1 1
3 UQ 1 1
4 UQ8 1 1
5 UQ5 1 0.970588
6 U10 1 1
7 UQ2 0.92 0.941176
8 UQ1 0.603774 0.794118
9 MQ7 0.552239 0.710526
10 MQ9 0.552239 0.710526
11 UQ6 0.449275 0.780488
12 9BR 0.405405 0.622222
Similar Ligands (3D)
Ligand no: 1; Ligand: UQ8; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2X34; Ligand: UQ8; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2x34.bio2) has 46 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2X34; Ligand: UQ8; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2x34.bio1) has 45 residues
No: Leader PDB Ligand Sequence Similarity
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