Receptor
PDB id Resolution Class Description Source Keywords
2Y24 1.39 Å EC: 3.2.1.136 STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY ERWINIA CHRYSANTHEMI GH5 GLUCURONOXYLANASE ERWINIA CHRYSANTHEMI HYDROLASE GLUCURONOXYLAN-SPECIFIC XYLANASE GH5 FAMILY ALDOTETRAOURONIC ACID
Ref.: STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY ERWIN CHRYSANTHEMI GH30 GLUCURONOXYLANASE. FEBS J. V. 278 2105 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
IMD A:1417;
Invalid;
none;
submit data
69.085 C3 H5 N2 c1c[n...
PG4 A:1414;
A:1415;
Invalid;
Invalid;
none;
none;
submit data
194.226 C8 H18 O5 C(COC...
PGE A:1416;
Invalid;
none;
submit data
150.173 C6 H14 O4 C(COC...
XYP XYP GCV XYP A:1001;
Valid;
none;
submit data
603.503 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2Y24 1.39 Å EC: 3.2.1.136 STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY ERWINIA CHRYSANTHEMI GH5 GLUCURONOXYLANASE ERWINIA CHRYSANTHEMI HYDROLASE GLUCURONOXYLAN-SPECIFIC XYLANASE GH5 FAMILY ALDOTETRAOURONIC ACID
Ref.: STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY ERWIN CHRYSANTHEMI GH30 GLUCURONOXYLANASE. FEBS J. V. 278 2105 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2Y24 - XYP XYP GCV XYP n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2Y24 - XYP XYP GCV XYP n/a n/a
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 5A6L - XYP XYP n/a n/a
2 4UQA - HIS C6 H10 N3 O2 c1c([nH+]c....
3 5A6M - XYP XYP n/a n/a
4 4UQC - GLC C6 H12 O6 C([C@@H]1[....
5 4CKQ - MLA C3 H4 O4 C(C(=O)O)C....
6 3KL3 - DHI C6 H10 N3 O2 c1c([nH+]c....
7 2Y24 - XYP XYP GCV XYP n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: XYP XYP GCV XYP; Similar ligands found: 26
No: Ligand ECFP6 Tc MDL keys Tc
1 XYP XYP GCV XYP 1 1
2 XYP XYP XYP GCV 0.792683 1
3 GCV XYP XYP XYP 0.792683 1
4 GCV XYP XYP XYS 0.792683 1
5 GCV XYP XYP 0.78481 1
6 XYP XYS 0.513514 0.888889
7 BXP 0.513514 0.888889
8 XYS XYP 0.513514 0.888889
9 XYP XYP XYP XYS 0.506494 0.888889
10 XYS XYP XYP 0.506494 0.888889
11 XYP XYP XYS 0.506494 0.888889
12 XYS XYS XYS XYS XYS 0.506494 0.888889
13 XYP XYP XYP XYP XYP XYP XYP 0.506494 0.888889
14 XYP XYP XYP XYP 0.506494 0.888889
15 XYP XYP XYP XYP XYP 0.506494 0.888889
16 XYP XYP XYP XYP XYP XYP 0.506494 0.888889
17 XYP XYS XYP 0.506494 0.888889
18 XYP XYP XYP 0.506494 0.888889
19 XYS XYS XYS XYS 0.506494 0.888889
20 AHR XYP XYP XYP 0.478261 0.8
21 XYS XYP AHR XYP 0.473118 0.8
22 XYP AHR XYP XYP 0.473118 0.8
23 XYP XYP XYP AHR 0.473118 0.8
24 AHR XYS XYS 0.460674 0.8
25 AHR XYS XYP XYP XYP 0.43617 0.8
26 XYS XYS XYS 0.421687 0.864865
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2Y24; Ligand: XYP XYP GCV XYP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2y24.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
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