Receptor
PDB id Resolution Class Description Source Keywords
2YB7 1.7 Å NON-ENZYME: BINDING CBM62 IN COMPLEX WITH 6-ALPHA-D-GALACTOSYL-MANNOTRIOSE CLOSTRIDIUM THERMOCELLUM SUGAR BINDING PROTEIN CARBOHYDRATE CARBOHYDRATE BINDING MO
Ref.: A NOVEL, NONCATALYTIC CARBOHYDRATE-BINDING MODULE D SPECIFICITY FOR GALACTOSE-CONTAINING POLYSACCHARIDE CALCIUM-MEDIATED OLIGOMERIZATION. J.BIOL.CHEM. V. 286 22499 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BMA GLA D:1;
C:1;
Valid;
Valid;
none;
none;
submit data
n/a n/a
CA A:1880;
B:1879;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
GOL A:1879;
B:1880;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2YFZ 1.8 Å NON-ENZYME: BINDING CBM62 FROM CLOSTRIDIUM THERMOCELLUM XYL5A CLOSTRIDIUM THERMOCELLUM SUGAR BINDING PROTEIN
Ref.: A NOVEL, NONCATALYTIC CARBOHYDRATE-BINDING MODULE D SPECIFICITY FOR GALACTOSE-CONTAINING POLYSACCHARIDE CALCIUM-MEDIATED OLIGOMERIZATION. J.BIOL.CHEM. V. 286 22499 2011
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BMA GLA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BMA GLA; Similar ligands found: 19
No: Ligand Similarity coefficient
1 BMA GLA 1.0000
2 BGC GLA 0.9641
3 GLC GLA 0.9615
4 GLC BGC 0.9348
5 BGC GLC 0.9347
6 GLC GLC 0.9307
7 BMA MAN 0.9290
8 DMJ MAN 0.9185
9 MAN MAN 0.9175
10 IFM MAN 0.9053
11 MMA MAN 0.9051
12 Z9N GLC 0.8994
13 GAL BGC 0.8992
14 VDM 0.8888
15 RAM GAD 0.8633
16 TOP 0.8630
17 MA1 GLC 0.8590
18 4P8 0.8569
19 7W7 0.8529
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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