Receptor
PDB id Resolution Class Description Source Keywords
2YNN 1.78 Å NON-ENZYME: OTHER YEAST BETAPRIME COP 1-304 WITH KTKTN MOTIF SACCHAROMYCES CEREVISIAE PROTEIN TRANSPORT PEPTIDE BINDING PROTEIN MEMBRANE TRAFFICCOPI-MEDIATED TRAFFICKING DILYSINE MOTIFS
Ref.: MOLECULAR BASIS FOR RECOGNITION OF DILYSINE TRAFFIC MOTIFS BY COPI. DEV.CELL V. 23 1255 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CYS THR PHE LYS THR LYS THR ASN P:1;
Valid;
none;
submit data
944.122 n/a SCC([...
SO4 A:1302;
A:1303;
A:1304;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4J73 1.44 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DILYSINE MOTIF ER RETRIEVAL SIGNAL COATOMERECOGNITION PROTEIN TRANSPORT
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Members (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
70% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
11 4J8B - LEU LYS THR LYS LEU LEU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: CYS THR PHE LYS THR LYS THR ASN; Similar ligands found: 96
No: Ligand ECFP6 Tc MDL keys Tc
1 CYS THR PHE LYS THR LYS THR ASN 1 1
2 THR PHE LYS LYS THR ASN 0.791209 0.98
3 CYS THR GLU LEU LYS LEU ASN ASP TYR 0.558333 0.890909
4 CYS ASP PTR ALA ASN PHE LYS 0.546392 0.86
5 THR LYS CYS VAL PHE MET 0.544643 0.854545
6 ALA ILE PHE GLN SER SER MET THR LYS 0.540984 0.875
7 CYS VAL PHE MET 0.524752 0.690909
8 SER ILE ILE ASN PHE GLU LYS LEU 0.520661 0.87037
9 ASP PHE M3L THR ASP 0.513514 0.741935
10 GLU ILE ILE ASN PHE GLU LYS LEU 0.512397 0.849057
11 LYS VAL ILE THR PHE ILE ASP LEU 0.508333 0.886792
12 CYS THR GLU LEU LYS LEU SER ASP TYR 0.504 0.857143
13 LYS MET ASN THR GLN PHE THR ALA VAL 0.5 0.909091
14 CYS VAL ASN GLY SER CYS PHE THR VAL 0.491803 0.867925
15 SER GLY ILE PHE LEU GLU THR SER 0.491228 0.814815
16 THR LYS ASN TYR LYS GLN THR SER VAL 0.488 0.890909
17 THR LYS ASN TYR LYS GLN PHE SER VAL 0.487603 0.842105
18 GLU GLN TYR LYS PHE TYR SER VAL 0.487603 0.824561
19 ILE ASN PHE ASP PHE ASN THR ILE 0.481818 0.763636
20 ILE LEU ALA LYS PHE LEU HIS THR LEU 0.480916 0.770492
21 ALA GLU THR PHE 0.48 0.82
22 GLU ASN GLN LYS GLU TYR PHE PHE 0.478261 0.818182
23 GLY ALA PHE THR PHE ASN GLU ASP PHE 0.478261 0.792453
24 GLN PHE LYS ASP ASN VAL ILE LEU LEU 0.476923 0.833333
25 TYR GLN GLU SER THR ASP PHE THR PHE LEU 0.472222 0.740741
26 LEU LYS THR LYS LEU LEU 0.470588 0.826923
27 PHE LEU ALA TYR LYS 0.469565 0.736842
28 LEU THR THR LYS LEU THR ASN THR ASN ILE 0.468468 0.833333
29 SER LEU PHE ASN THR VAL ALA THR LEU 0.467213 0.811321
30 PHE LEU SER TYR LYS 0.456897 0.775862
31 SER ILE ILE GLY PHE GLU LYS LEU 0.456693 0.818182
32 THR ASN GLU TYR LYS VAL 0.45614 0.851852
33 LEU PRO PHE ASP LYS THR THR ILE MET 0.454545 0.731343
34 GLU GLU TYR LEU GLN ALA PHE THR TYR 0.453846 0.736842
35 ALA VAL TYR ASN PHE ALA THR MET 0.452381 0.733333
36 LYS THR LYS LEU LEU 0.45098 0.826923
37 VAL LYS VAL VAL ALA LYS LYS TYR ARG ASN 0.446281 0.783333
38 GLN VAL ASN PHE LEU GLY LYS 0.444444 0.849057
39 GLY ILE LEU GLU PHE VAL PHE THR LEU 0.443548 0.8
40 GLU GLU TYR LEU LYS ALA TRP THR PHE 0.442953 0.746032
41 GLY TYR GLU ASN PRO THR TYR LYS PHE PHE 0.442177 0.727273
42 ALA GLU THR PHE TYR VAL ASP GLY 0.441667 0.75
43 LYS THR LYS 0.44086 0.84
44 ASP PHE GLU GLU ILE 0.439252 0.730769
45 ALA LYS PHE ARG HIS ASP 0.436508 0.68254
46 ALA THR ARG ASN PHE SER GLY 0.435484 0.793103
47 GLU THR PHE TYR VAL ASP GLY 0.434426 0.789474
48 THR ASN GLU PHE TYR ALA 0.42735 0.781818
49 PHE LEU GLU LYS 0.427273 0.788462
50 TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 0.426471 0.730159
51 LYS TYR LYS 0.425743 0.773585
52 FME TYR PHE ILE ASN ILE LEU THR LEU 0.425373 0.737705
53 LYS VAL LEU PHE LEU ASP GLY 0.425 0.792453
54 GLY ILE LEU GLY LEU VAL PHE THR LEU 0.424 0.796296
55 LEU PRO PHE ASP LYS SER THR ILE MET 0.423841 0.720588
56 SER LEU ASN TYR ILE ILE LYS VAL LYS GLU 0.423358 0.859649
57 PHE LEU SER THR LYS 0.422414 0.849057
58 ACE ASN TRP GLU THR PHE 0.421875 0.716667
59 ARG ABA GLN ILE PHE ALA ASN ILE 0.421875 0.826923
60 SER THR SEP PRO THR PHE ASN LYS 0.421769 0.695652
61 ALA PHE THR SER 0.421569 0.764706
62 LEU ASP GLU GLU THR GLY GLU PHE LEU 0.420635 0.867925
63 ARG PRO MET THR PHE LYS GLY ALA LEU 0.420382 0.657534
64 THR LYS THR ALA THR ILE ASN ALA SER 0.420168 0.849057
65 GLU THR VAL ARG PHE GLN SER ASP 0.41791 0.775862
66 ASN LYS PTR GLY ASN CA 0.416667 0.709677
67 ILE ARG LYS ILE LEU PHE LEU ASP GLY ILE 0.415493 0.704918
68 ASP PHE SER ILE 0.415094 0.773585
69 ASN GLY TYR GLU ASN PRO THR TYR LYS 0.414966 0.727273
70 ASP TYR ASN PRO TYR LEU LEU PHE LEU LYS 0.414286 0.705882
71 GLY ALA GLN THR PHE TYR VAL ASP GLY ALA 0.414062 0.789474
72 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE 0.413793 0.666667
73 LEU ARG ASN GLN SER VAL PHE ASN PHE 0.413534 0.741935
74 GLU ASN LEU TYR PHE GLN 0.413223 0.736842
75 GLY GLN VAL PRO PHE SER LYS GLU GLU CYS 0.412587 0.75
76 LEU VAL THR LEU VAL PHE VAL 0.412281 0.711538
77 LEU PRO PHE GLU LYS SER THR VAL MET 0.412162 0.731343
78 TYR PHE SER SEP ASN 0.411765 0.640625
79 LYS VAL LEU SER LYS ILE PHE MYR 0.411348 0.807018
80 GLY ASP GLU VAL LYS VAL PHE ARG 0.410448 0.741379
81 ASP PHE ALA ASN THR PHE LEU PRO 0.410448 0.712121
82 ALA THR LYS ILE ASP ASN LEU ASP 0.409836 0.833333
83 PHE SER GLN HIS LYS THR SER TPO ILE 0.409396 0.695652
84 GLU LEU ASN ARG LYS MET ILE TYR MET 0.408163 0.738462
85 LYS GLN TRP LEU VAL TRP LEU PHE LEU 0.407143 0.688525
86 THR THR ALA PRO PHE LEU SER GLY LYS 0.406897 0.738462
87 GLY ALA GLU THR PHE TYR VAL ASP GLY ALA 0.406015 0.775862
88 THR PHE ALY SER ILE MET LYS 0.405797 0.824561
89 ALA MET TYR LYS 0.405405 0.754386
90 TYR GLN SER LYS LEU 0.405172 0.821429
91 ALA PHE ARG ILE PRO LEU THR ARG 0.402778 0.671429
92 LYS PHE LYS 0.401961 0.72
93 GLY GLY LYS LYS LYS TYR GLN LEU 0.401639 0.785714
94 VAL THR THR ASP ILE GLN VAL LYS VAL 0.401639 0.830189
95 ASP GLU LEU GLU ILE LYS ALA TYR 0.401515 0.803571
96 GLY ARG PHE ALA ALA ALA ILE ALA LYS 0.4 0.711864
Similar Ligands (3D)
Ligand no: 1; Ligand: CYS THR PHE LYS THR LYS THR ASN; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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