Receptor
PDB id Resolution Class Description Source Keywords
2ZYN 1.7 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF CYCLO/MALTODEXTRIN-BINDING PROTEIN COMP BETA-CYCLODEXTRIN THERMOACTINOMYCES VULGARIS SOLUTE-BINDING PROTEIN CLOSED FORM SUGAR BINDING PROTEIN
Ref.: CRYSTAL STRUCTURES OF OPEN AND CLOSED FORMS OF CYCLO/MALTODEXTRIN-BINDING PROTEIN FEBS J. V. 276 3008 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLC GLC GLC GLC GLC GLC GLC B:1;
Valid;
none;
submit data
1134.99 n/a OCC1O...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2ZYK 2.5 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF CYCLO/MALTODEXTRIN-BINDING PROTEIN COMP GAMMA-CYCLODEXTRIN THERMOACTINOMYCES VULGARIS SOLUTE-BINDING PROTEIN CLOSED FORM SUGAR BINDING PROTEIN
Ref.: STRUCTURAL BASIS FOR CYCLODEXTRIN RECOGNITION BY THERMOACTINOMYCES VULGARIS CYCLO/MALTODEXTRIN-BINDI PROTEIN FEBS J. V. 274 2109 2007
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2ZYN - GLC GLC GLC GLC GLC GLC GLC n/a n/a
2 2ZYO - GLC GLC n/a n/a
3 2ZYM - GLC GLC GLC GLC GLC GLC n/a n/a
4 2ZYK Kd = 0.23 uM GLC GLC GLC GLC GLC GLC GLC GLC n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2ZYN - GLC GLC GLC GLC GLC GLC GLC n/a n/a
2 2ZYO - GLC GLC n/a n/a
3 2ZYM - GLC GLC GLC GLC GLC GLC n/a n/a
4 2ZYK Kd = 0.23 uM GLC GLC GLC GLC GLC GLC GLC GLC n/a n/a
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 2ZYN - GLC GLC GLC GLC GLC GLC GLC n/a n/a
2 2ZYO - GLC GLC n/a n/a
3 2ZYM - GLC GLC GLC GLC GLC GLC n/a n/a
4 2ZYK Kd = 0.23 uM GLC GLC GLC GLC GLC GLC GLC GLC n/a n/a
5 2GH9 Kd = 1 uM GLC GLC GLC n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC GLC; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 GLC GLC GLC GLC GLC GLC GLC 1 1
2 GLC GLC GLC GLC GLC GLC 1 1
3 GLC GLC GLC GLC GLC GLC GLC GLC 1 1
4 GLC GLC GLC GLC 0.510638 0.939394
Similar Ligands (3D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC GLC; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2ZYK; Ligand: GLC GLC GLC GLC GLC GLC GLC GLC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2zyk.bio4) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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