Receptor
PDB id Resolution Class Description Source Keywords
3AQ4 1.8 Å NON-ENZYME: OTHER MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE AGROBACTERIUM PROTEIN 6B ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR MIRNA PROCESSING MACHINERIES TOXINRIBOSYLATION
Ref.: MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DI BY AGROBACTERIUM PROTEIN 6B GENES DEV. V. 25 64 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:183;
B:183;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:182;
B:182;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3AQ4 1.8 Å NON-ENZYME: OTHER MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE AGROBACTERIUM PROTEIN 6B ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR MIRNA PROCESSING MACHINERIES TOXINRIBOSYLATION
Ref.: MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DI BY AGROBACTERIUM PROTEIN 6B GENES DEV. V. 25 64 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3AQ4; Ligand: GDP; Similar sites found: 459
This union binding pocket(no: 1) in the query (biounit: 3aq4.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3Q72 GNP 0.0000000002898 0.70916 None
2 2HF9 GSP 0.00000002965 0.59956 None
3 1UJ2 ADP 0.00001611 0.55303 None
4 1UJ2 C5P 0.00002224 0.54625 None
5 1UKZ ADP 0.0001199 0.52089 None
6 2RGX AP5 0.0002708 0.51381 None
7 4R2I ANP 0.0008007 0.46704 None
8 2B8T THM 0.001816 0.44663 None
9 2F3R G5P 0.003944 0.44432 None
10 1D2E GDP 0.0000000003206 0.75186 1.63043
11 3BOS CDP 0.00004095 0.49812 1.63043
12 4D81 ADP 0.00003663 0.4869 1.63043
13 2D2F ADP 0.00001824 0.43467 1.63043
14 1Q20 PLO 0.01275 0.42023 1.63043
15 1QHG ATP 0.004801 0.41869 1.63043
16 1D2N ANP 0.0002125 0.48876 2.17391
17 4KVX ACO 0.02275 0.40019 2.5641
18 1TQ4 GDP 0.000000001888 0.61391 2.71739
19 1H65 GDP 0.00000739 0.56026 2.71739
20 2ZFI ADP 0.00001117 0.5423 2.71739
21 1FP6 ADP 0.00001592 0.50288 2.71739
22 4PX9 ADP 0.0001292 0.49911 2.71739
23 3H86 AP5 0.0003845 0.4972 2.71739
24 2CHG ANP 0.0001124 0.49703 2.71739
25 3ZFD ANP 0.0000887 0.49646 2.71739
26 3BER AMP 0.006578 0.41216 2.71739
27 3BD9 A3P 0.006671 0.40757 2.71739
28 3IUY AMP 0.005894 0.40492 2.71739
29 1S7N COA 0.01507 0.40112 2.74725
30 4U5X GNP 0.0000001148 0.64007 2.80899
31 1DAR GDP 0.0000000001157 0.74437 3.26087
32 3BFV ADP 0.000001141 0.58883 3.26087
33 4WZ6 ATP 0.000005263 0.58319 3.26087
34 1XMV ADP 0.00001092 0.53518 3.26087
35 2GDJ ANP 0.00004277 0.51492 3.26087
36 1IN4 ADP 0.00006633 0.51025 3.26087
37 2FAH GDP 0.0001282 0.49178 3.26087
38 4FCW ADP 0.0001276 0.4863 3.26087
39 3DKP ADP 0.0001932 0.46957 3.26087
40 4LJ9 ACP 0.0003494 0.45919 3.26087
41 2BEK ATP 0.0001808 0.42822 3.26087
42 2VHJ ADP 0.008048 0.41407 3.26087
43 2HCJ GDP 0.000000000008515 0.77134 3.80435
44 4NCN GTP 0.000000003442 0.72185 3.80435
45 4AG5 ADP 0.000002396 0.60069 3.80435
46 5GJC ATP 0.00002101 0.52942 3.80435
47 2ZPA ADP 0.0001012 0.50163 3.80435
48 2DPY ADP 0.0001788 0.49931 3.80435
49 1T5C ADP 0.0000006228 0.49794 3.80435
50 1W5T ANP 0.0005277 0.47008 3.80435
51 1W5T ADP 0.001259 0.448 3.80435
52 4GOX A3P 0.0002078 0.41599 3.80435
53 3CV2 OXL 0.02153 0.40202 3.80435
54 1D8T GDP 0.00000000001527 0.78183 4.34783
55 1G7S GDP 0.00000000006076 0.77577 4.34783
56 2BVN GNP 0.00000000006441 0.72462 4.34783
57 3TK1 GDP 0.00000000006983 0.71467 4.34783
58 4LPS GDP 0.000000007361 0.68039 4.34783
59 1IWE IMP 0.00009458 0.57647 4.34783
60 1XP8 AGS 0.000004466 0.52944 4.34783
61 1XKV ATP 0.00004144 0.5117 4.34783
62 4IEE AGS 0.00009456 0.50564 4.34783
63 3QKT ANP 0.0001969 0.49659 4.34783
64 4ZG4 VO4 ADP 0.0000395 0.4359 4.34783
65 2FSH ANP 0.0009107 0.43303 4.34783
66 1NST A3P 0.002728 0.43229 4.34783
67 1J99 AND 0.01823 0.41247 4.34783
68 1L2T ATP 0.0001919 0.4035 4.34783
69 1KO8 6PG 0.00005933 0.51253 4.57143
70 3ZQ6 ADP ALF 0.000002429 0.59285 4.62963
71 2GJ8 ALF GDP 0.0000000002138 0.57608 4.65116
72 4B47 GDP 0.000000000005617 0.7777 4.8913
73 1G6H ADP 0.0000001986 0.6789 4.8913
74 2QEN ADP 0.000002577 0.57363 4.8913
75 3VX3 ADP 0.00002036 0.53436 4.8913
76 4TTQ ATP 0.00002789 0.50705 4.8913
77 2Y65 ADP 0.000001479 0.50375 4.8913
78 1B0U ATP 0.0001261 0.49212 4.8913
79 4IOK XPO 0.0005063 0.4769 4.8913
80 4IOK ADP 0.0006503 0.4769 4.8913
81 1Z6T ADP 0.00006531 0.46335 4.8913
82 1T8U UAP SGN IDS SGN 0.004077 0.4518 4.8913
83 1T8U A3P 0.002436 0.43866 4.8913
84 5E5U MLI 0.008392 0.43404 4.8913
85 1G3M PCQ 0.01556 0.42128 4.8913
86 5MEX SZZ 0.0214 0.41323 4.8913
87 5MEX PAP 0.01256 0.40309 4.8913
88 3IIJ ADP 0.000004057 0.54249 5
89 1SKQ GDP 0.00000000001 0.76883 5.43478
90 3E70 GDP 0.0000002814 0.60794 5.43478
91 1QF5 GDP 0.00002535 0.57466 5.43478
92 1G3Q ADP 0.00000801 0.54135 5.43478
93 3KJI ADP 0.00001275 0.53833 5.43478
94 5I0H ADP BEF 0.00002981 0.52908 5.43478
95 1OXV ANP 0.000004726 0.52507 5.43478
96 2IXE ATP 0.0000725 0.51312 5.43478
97 2XT3 ADP 0.000001485 0.50318 5.43478
98 4HSE ADP 0.00008729 0.49386 5.43478
99 2VF7 ADP 0.0001481 0.48334 5.43478
100 1JJV ATP 0.0000206 0.48228 5.43478
101 1XX6 ADP 0.0004977 0.44959 5.43478
102 1AQU A3P 0.006454 0.41478 5.43478
103 3R7F CP 0.01851 0.40217 5.43478
104 3QXC ATP 0.0002368 0.40036 5.43478
105 1GXU 2HP 0.0002683 0.49352 5.49451
106 1QF9 C5P 0.0004755 0.49528 5.6701
107 1YRB GDP 0.0000000006084 0.68555 5.97826
108 1SVI GDP 0.000000007924 0.65044 5.97826
109 2W58 ADP 0.0000007812 0.644 5.97826
110 3A1S GDP 0.0000000577 0.63945 5.97826
111 1JI0 ATP 0.000002092 0.59501 5.97826
112 2ZR9 DTP 0.000001323 0.58581 5.97826
113 3A4M ADP 0.0000003466 0.55938 5.97826
114 3B5J 12D 0.000012 0.55743 5.97826
115 1S3G AP5 0.00009615 0.53414 5.97826
116 3FB4 AP5 0.0001061 0.53198 5.97826
117 4P32 ADP 0.00003829 0.5263 5.97826
118 4PFO ADP 0.00005774 0.52421 5.97826
119 4MKF AP5 0.0001766 0.52204 5.97826
120 4KFU ACP 0.000001384 0.52195 5.97826
121 4MKG AP5 0.0001682 0.52185 5.97826
122 2QZ4 ADP 0.00003105 0.51748 5.97826
123 1V8K ANP 0.00002064 0.51197 5.97826
124 1G41 ADP 0.0001037 0.49333 5.97826
125 1OFH ADP 0.0001851 0.48173 5.97826
126 5N69 ADP 0.00004557 0.48166 5.97826
127 4TMK T5A 0.001001 0.47518 5.97826
128 1NY5 ADP 0.0004522 0.46878 5.97826
129 2VB6 ADP BEF 0.00002321 0.44515 5.97826
130 3TBK ANP 0.0007523 0.42984 5.97826
131 3FVQ ATP 0.0001647 0.42877 5.97826
132 3MGB PAP 0.006117 0.41972 5.97826
133 2GK6 ADP 0.003938 0.40089 5.97826
134 2RCN GDP 0.0000000000756 0.75136 6.52174
135 4LC1 GDP 0.00000000173 0.72121 6.52174
136 3NHB ADP 0.00000188 0.60676 6.52174
137 5H56 ADP 0.000009943 0.56914 6.52174
138 5H56 TYD 0.000009943 0.56914 6.52174
139 2C04 GCP 0.0000009936 0.54112 6.52174
140 2JLR ANP 0.00006992 0.50401 6.52174
141 2B8W ALF 5GP 0.0001957 0.49672 6.52174
142 2WHX ADP 0.00001129 0.48445 6.52174
143 1G6O ADP 0.00009867 0.47863 6.52174
144 2XAU ADP 0.0002323 0.47717 6.52174
145 2WOJ ADP ALF 0.0000103 0.43936 6.52174
146 5EP2 AZU 0.004606 0.42556 6.52174
147 4PJ3 ANP 0.002002 0.41703 6.52174
148 3BFX A3P 0.0008822 0.4157 6.52174
149 1F5N GNP 0.00008841 0.40548 6.52174
150 1LOJ U 0.01267 0.41136 6.89655
151 1KK1 GNP 0.00000000001649 0.7601 7.06522
152 5HCN GCP 0.000000005636 0.6857 7.06522
153 5L3V GDP 0.0000001307 0.60517 7.06522
154 1LVG ADP 0.0000001246 0.57565 7.06522
155 4CVN ADP 0.000006212 0.57159 7.06522
156 5I34 GDP 0.000007729 0.54206 7.06522
157 1ZIN AP5 0.00008372 0.53718 7.06522
158 2QG6 NMN 0.00007612 0.52223 7.06522
159 1SQ5 ADP 0.00002337 0.52006 7.06522
160 4ZNL BEF ADP 0.00003324 0.51306 7.06522
161 2VVG ADP 0.0000003171 0.50827 7.06522
162 1YQT ADP 0.000007765 0.49131 7.06522
163 2IS6 ADP 0.0001294 0.47648 7.06522
164 2D7D ADP 0.0007364 0.44422 7.06522
165 2ZPT A3P 0.02143 0.42589 7.06522
166 3KTA AP5 0.0001119 0.46454 7.51445
167 2QN6 GDP 0.00000000001525 0.76148 7.6087
168 5FG3 GDP 0.00000000003927 0.74405 7.6087
169 3PQC GDP 0.0000003466 0.58809 7.6087
170 4P4T GDP 0.00000003793 0.58109 7.6087
171 3TMK T5A 0.00004867 0.53353 7.6087
172 1BG2 ADP 0.0000003667 0.50508 7.6087
173 3DC4 ADP 0.00000976 0.50108 7.6087
174 2XTN GTP 0.000002532 0.48815 7.6087
175 4XTR ADP 0.00001365 0.48302 7.6087
176 4XTR ATP 0.000007324 0.46688 7.6087
177 4XVU ATP 0.000009089 0.46427 7.6087
178 2PL3 ADP 0.0001982 0.46209 7.6087
179 3B7G ANP 0.0005304 0.45798 7.6087
180 1YTM ATP 0.00005994 0.45354 7.6087
181 4BQS ADP 0.000006097 0.55465 7.95455
182 4RD0 GDP 0.00000000007544 0.79746 8.15217
183 2WIC GNP 0.00000000005016 0.77958 8.15217
184 2C77 GNP 0.000000000276 0.76701 8.15217
185 4R98 GNH 0.0000000003459 0.75404 8.15217
186 1WF3 GNP 0.000000001879 0.74359 8.15217
187 2AWN ADP 0.0000001166 0.70084 8.15217
188 2C78 GNP 0.0000000001579 0.63454 8.15217
189 4H1V GNP 0.0000004073 0.56091 8.15217
190 4YMU ATP 0.00001454 0.54484 8.15217
191 5X40 ACP 0.00005883 0.51965 8.15217
192 5GVR LMR 0.0001979 0.50617 8.15217
193 3COB ADP 0.000001384 0.5053 8.15217
194 1ZUI SKM 0.0000732 0.53455 8.33333
195 3B9Q MLI 0.000001012 0.62544 8.69565
196 5L3R GCP 0.0000001898 0.5109 8.69565
197 2Z5F A3P 0.001972 0.443 8.69565
198 2OG2 MLI 0.000001527 0.42767 8.69565
199 4KBF AMP 0.001407 0.42614 8.69565
200 1F2U ATP 0.0003948 0.48573 8.72483
201 1B7T ADP 0.0001641 0.4701 8.97436
202 1KK8 BEF ADP 0.00006187 0.50914 9.09091
203 1IHU ADP 0.000004815 0.57158 9.23913
204 1IHU AF3 0.000004269 0.57158 9.23913
205 1ION ADP 0.00001778 0.52864 9.23913
206 4U00 ADP 0.0000004894 0.49694 9.23913
207 3DZD ADP 0.0002731 0.47654 9.23913
208 1W7J ADP BEF 0.00006854 0.46298 9.23913
209 4HUT ATP 0.01206 0.41775 9.23913
210 3RC3 ANP 0.002697 0.41213 9.23913
211 1MKY GDP 0.000000000001538 0.82571 9.78261
212 3WXM GTP 0.000000004539 0.72218 9.78261
213 1GOJ ADP 0.0000002293 0.66583 9.78261
214 1W0J ADP 0.000004331 0.5601 9.78261
215 1RRC ADP 0.000001202 0.5021 9.78261
216 1W0J ADP BEF 0.0003115 0.47868 9.78261
217 4A4Z ANP 0.0008246 0.45457 9.78261
218 4QM7 GTP 0.00001887 0.51286 9.94152
219 1M7G ADX 0.000004013 0.5904 10.3261
220 1M7G ADP 0.000006608 0.5759 10.3261
221 1M7G AV2 0.0000003571 0.57499 10.3261
222 1CR1 TTP 0.00004486 0.52069 10.3261
223 4IHQ ADP 0.00001704 0.50475 10.3261
224 1OS1 ATP 0.0002232 0.50121 10.3261
225 1OS1 PYR 0.0002411 0.50121 10.3261
226 1F9V ADP 0.000005369 0.49893 10.3261
227 4QRH 0O2 0.003983 0.42855 10.3261
228 4IDN GNP 0.0001343 0.42711 10.3261
229 3MD0 GDP 0.00000000002816 0.74762 10.8696
230 5TSH ANP 0.00001214 0.52191 10.8696
231 2Q2Y ADP 0.0003342 0.50677 10.8696
232 2Q2Y MKR 0.000345 0.50484 10.8696
233 5TSH ADP 0.00001937 0.4789 10.8696
234 5L3W GDP 0.000002218 0.57033 11.413
235 4WZA ACP 0.00005169 0.56764 11.413
236 4WZA ADP 0.00005169 0.56764 11.413
237 5L3S GNP 0.0000003254 0.50442 11.413
238 5L3S G 0.005193 0.43336 11.413
239 5CK5 GDP 0.0000000001807 0.71663 11.9565
240 5KUT GDP 0.0000000111 0.67221 11.9565
241 2NCD ADP 0.000005746 0.58058 11.9565
242 3ZIA ADP 0.000007904 0.54796 11.9565
243 3ZIA ATP 0.000006128 0.54668 11.9565
244 4OI4 ATP 0.0002545 0.48927 11.9565
245 1OYY AGS 0.0006223 0.44896 11.9565
246 2C9O ADP 0.00008993 0.44256 11.9565
247 1OE0 TTP 0.005952 0.42858 11.9565
248 3FYH ADP 0.00005536 0.42508 11.9565
249 4WOP CTP 0.001019 0.40659 11.9565
250 1PUJ GNP 0.00000000002542 0.80297 12.5
251 3FWY ADP 0.00000525 0.55919 12.5
252 5BQ5 ADP BEF 0.00004357 0.49624 12.5
253 2PEZ DAT 0.000004656 0.58908 12.8492
254 2PEZ GGZ 0.000004656 0.41564 12.8492
255 1G7C 5GP 0.00000001368 0.67904 13.0435
256 2OFW ADX 0.000007543 0.58855 13.0435
257 1X6V ADP 0.000004399 0.43451 13.0435
258 4YS0 ADP 0.001127 0.41773 13.0435
259 4HI0 GDP 0.000000001703 0.61782 13.587
260 5KSP GDP 0.000000646 0.59141 13.587
261 5KSZ GCP 0.000001978 0.55567 13.587
262 5M04 GDP 0.000000000001285 0.88486 14.1304
263 2ZE7 AMP 0.001125 0.46201 14.1304
264 2ZE7 DST 0.001218 0.46201 14.1304
265 2IYL GDP 0.000000367 0.61196 14.6739
266 1NN5 ANP 0.00001226 0.56651 14.6739
267 1VHT BA3 0.00035 0.46896 14.6739
268 1U0J ADP 0.0001757 0.46165 14.6739
269 5WRJ A3P 0.002334 0.44502 14.6739
270 1NN5 2DT 0.02384 0.42996 14.6739
271 1JWY GDP 0.00000003394 0.65786 15.2174
272 2BIF SIN 0.0001187 0.53324 15.2174
273 2BIF ANP 0.00006759 0.53324 15.2174
274 3P4X ADP 0.000007338 0.52078 15.2174
275 1JWY ADP 0.00006098 0.50099 15.2174
276 3RLF ANP 0.0001703 0.4976 15.2174
277 1JJ7 ADP 0.0000001813 0.68074 15.7609
278 2V7Q ATP 0.000004398 0.55662 16
279 3QF7 ANP 0.00004965 0.51617 16
280 2V7Q ADP 0.0003658 0.45737 16
281 2CK3 ANP 0.0004203 0.42759 16
282 2CK3 ADP 0.0003976 0.40782 16
283 2KIN ADP 0.0000004884 0.50045 16.3043
284 5MZN ADP 0.003318 0.43643 16.3043
285 2CJW GDP 0.000000000002988 0.81322 16.8478
286 1GWN GTP 0.0000002878 0.62434 17.3913
287 1M7B GTP 0.0000001698 0.54702 17.3913
288 4QOS ADP 0.0002213 0.4645 17.3913
289 2HT6 GDP 0.000000000003783 0.7847 17.8161
290 1E96 GTP 0.0000004537 0.62572 17.9348
291 1NF3 GNP 0.000000491 0.49265 17.9348
292 1RYH GNP 0.00000002192 0.66279 18.4783
293 1A4R GDP 0.0000000813 0.6471 18.4783
294 1DS6 GDP 0.00000002139 0.64533 18.4783
295 2W2X GSP 0.0000001141 0.64333 18.4783
296 1A4R GNH 0.0000001071 0.63817 18.4783
297 4DID GDP 0.00000008529 0.63167 18.4783
298 1I4D GDP 0.00000002375 0.63038 18.4783
299 2NGR GDP 0.0000001094 0.62672 18.4783
300 4ITR GDP 0.0000002659 0.62292 18.4783
301 1GRN GDP 0.0000003185 0.61606 18.4783
302 3H4S ADP 0.000001666 0.50026 18.4783
303 4FRZ ADP 0.000005424 0.49834 18.4783
304 1R6B ADP 0.0001548 0.48247 18.4783
305 2ZEJ GDP 0.0000000001942 0.79134 19.0217
306 2WKQ GTP 0.0000003444 0.51689 19.0217
307 1FNN ADP 0.00005998 0.45612 19.0217
308 2FJU GSP 0.0000001971 0.63211 19.1011
309 1HE1 GDP 0.0000002373 0.54174 19.3182
310 1HE1 AF3 0.01315 0.40669 19.3182
311 5LB3 ADP 0.00008459 0.50797 20.1087
312 3M1I GTP 0.000000001816 0.74431 20.6522
313 3W5J GDP 0.000000005209 0.59371 20.6522
314 1G4U GDP 0.0000002659 0.55196 20.6522
315 4R43 GDP 0.00005913 0.50832 20.6522
316 2XTZ GSP 0.0000000002605 0.78204 21.1957
317 3GJ0 GDP 0.0000000002226 0.76303 21.1957
318 3CH5 GDP 0.0000000001644 0.75598 21.1957
319 5BXQ GDP 0.000000000208 0.7513 21.1957
320 3GJ8 GDP 0.0000000002204 0.75015 21.1957
321 4HAT GNP 0.000000001806 0.74726 21.1957
322 3GJ5 GDP 0.0000000002905 0.74466 21.1957
323 3GJ3 GDP 0.0000000001565 0.73868 21.1957
324 3GJ7 GDP 0.0000000002828 0.72776 21.1957
325 3GJ4 GDP 0.0000000003464 0.72394 21.1957
326 3DEF GDP 0.000002034 0.57534 21.1957
327 2F9L GDP 0.000000004893 0.57286 21.1957
328 1IBR GNP 0.000000002623 0.54553 21.1957
329 1MH1 GNP 0.0000001232 0.50017 21.1957
330 1AZT GSP 0.00000000001922 0.8464 21.7391
331 1CS4 GSP 0.0000000001535 0.56596 21.7391
332 1K6M AGS 0.00005334 0.52169 21.7391
333 2CE7 ADP 0.00005042 0.50777 21.7391
334 3SBD GNP 0.0000004476 0.4951 21.7391
335 1WA5 GTP 0.000000003711 0.50383 22.1591
336 2J0V GDP 0.00000005791 0.63937 22.2826
337 4NON GDP 0.000000001051 0.54972 22.2826
338 2D7C GTP 0.000000002526 0.73445 22.7545
339 3RWO GDP 0.000000002299 0.73643 23.3696
340 5HR5 ADP 0.00003649 0.51985 23.3696
341 5HR5 FLC 0.006809 0.43257 23.3696
342 3ZS9 ADP ALF 0.00001115 0.43752 23.6842
343 3EC1 GDP 0.0000000005996 0.73025 23.913
344 3CX8 GSP 0.00000000002853 0.83801 24.4565
345 3AB3 GDP 0.0000000002191 0.77174 24.4565
346 5UWP GNP 0.000000001681 0.74878 25
347 1Z06 GNP 0.000000001123 0.74833 25
348 5UWI GNP 0.00000000177 0.74484 25
349 5UWT GNP 0.000000001977 0.74252 25
350 2GCN GDP 0.0000002184 0.63294 25
351 2GCO GNP 0.0000001513 0.63116 25
352 5UWQ GNP 0.000000001624 0.55033 25
353 5DIF GNP 0.000000001691 0.54977 25
354 5DHF GNP 0.00000000179 0.54927 25
355 5UWU GNP 0.000000001786 0.54925 25
356 5UWW GNP 0.000000001858 0.54905 25
357 5UWR GNP 0.000000001824 0.54902 25
358 5UWO GNP 0.00000000184 0.54887 25
359 5UWH GNP 0.000000001856 0.54874 25
360 5UWJ GNP 0.000000001948 0.54826 25
361 5UWS GNP 0.000000001919 0.53772 25
362 5DI9 GNP 0.000000002289 0.53589 25
363 1GOT GDP 0.00000000001458 0.83138 25.5435
364 2G77 GDP 0.0000000006474 0.66371 25.5435
365 3REF GDP 0.0000001107 0.54043 25.5435
366 2G77 AF3 0.009575 0.41786 25.5435
367 1Z2A GDP 0.000000000877 0.5935 25.5952
368 1TAD GDP 0.00000000002001 0.84554 26.087
369 1TAD ALF 0.00000000002001 0.5808 26.087
370 1NJF AGS 0.00004718 0.52199 26.087
371 1NJF ADP 0.00005072 0.51573 26.087
372 1Y3A GDP 0.00000000001292 0.83773 27.1739
373 1BH2 GSP 0.00000000003149 0.83592 27.1739
374 2A9K GDP 0.000000003218 0.70929 27.1739
375 5KDO GDP 0.00000000001069 0.69144 27.1739
376 2OM2 GDP 0.00000000001059 0.69143 27.1739
377 1FQJ GDP 0.000000000009718 0.656 27.1739
378 1FQK GDP 0.00000000001494 0.65134 27.1739
379 1GP2 GDP 0.00000000001912 0.64875 27.1739
380 2ODE ALF GDP 0.00000000001446 0.58316 27.1739
381 2J5V PCA 0.03075 0.40133 27.1739
382 1SVK ALF GDP 0.00000000001762 0.85128 27.7174
383 2A5J GDP 0.0000000007455 0.70261 27.7174
384 3Q85 GNP 0.00000000002353 0.77398 27.8107
385 1ZC3 GNP 0.000000000619 0.76696 28
386 4DCT GDP 0.000000001338 0.71428 28.2609
387 1Z0F GDP 0.0000000003427 0.74138 28.4916
388 1X1R GDP 0.000000009696 0.70906 28.6517
389 1OIX GDP 0.000000001986 0.73949 28.8043
390 1VG1 GDP 0.000000000114 0.76326 29.3478
391 1VG8 GNP 0.000000001097 0.75492 29.3478
392 1VG9 GDP 0.0000000004605 0.7355 29.3478
393 1VG0 GDP 0.0000000007662 0.73429 29.3478
394 1OIV GDP 0.000000003247 0.72919 29.3478
395 5UQW GDP 0.000000003275 0.56534 29.6296
396 1U8Z GDP 0.0000000004547 0.606 29.7619
397 3T1O GDP 0.000000000012 0.8132 29.8913
398 3T12 GDP ALF 0.00000000001789 0.66637 29.8913
399 1KY3 GDP 0.000000005593 0.69421 30.2198
400 5TB5 GDP 0.000000000908 0.69872 30.2703
401 5TAR GDP 0.000000001138 0.67362 30.2703
402 1S8F GDP 0.000000002741 0.73845 30.5085
403 4HDO GNP 0.00000001575 0.69886 30.5389
404 1Z0K GTP 0.000000003511 0.72144 30.814
405 4DSU GDP 0.000000002513 0.73748 30.9783
406 1Z0A GDP 0.0000000002786 0.75022 31.0345
407 2HV8 GTP 0.000000003458 0.72787 31.3953
408 3T5G GDP 0.000000001006 0.7245 31.4917
409 4C4P GNP 0.000000002482 0.73774 31.7919
410 2C5L GTP 0.0000000049 0.72342 31.7919
411 1KMQ GNP 0.0000004115 0.62261 32.0652
412 1GUA GNP 0.00000001301 0.52738 32.0988
413 4K81 GTP 0.000000001193 0.75603 32.1637
414 1XTQ GDP 0.000000001075 0.746 32.2034
415 2BME GNP 0.000000004781 0.72109 32.6087
416 4D0N GDP 0.00000001428 0.65288 32.6087
417 5HPY GDP 0.0000002182 0.62373 32.6087
418 1OW3 GDP 0.0000003297 0.61535 32.6087
419 5IRC GDP 0.000001554 0.57746 32.6087
420 1LFD GNP 0.000000007478 0.71172 32.9341
421 1CXZ GSP 0.0000002845 0.62748 32.967
422 2UZI GTP 0.000000004779 0.7211 33.1325
423 1NVV GNP 0.00000001068 0.70703 33.1325
424 3KUD GDP 0.000000006176 0.7032 33.1325
425 3DDC GNP 0.00000001367 0.70183 33.1325
426 1WQ1 GDP 0.000000009 0.5629 33.1325
427 1CLU DBG 0.000000003026 0.44303 33.1325
428 1WQ1 AF3 0.01301 0.41436 33.1325
429 5O2T GSP 0.000000005296 0.5385 33.1361
430 2WJG GDP 0.00000000003803 0.79906 33.1522
431 2BCG GDP 0.000000002231 0.62688 33.1522
432 1YZN GNP 0.000000006483 0.53631 33.1522
433 5XCO GDP 0.000000001619 0.71921 33.3333
434 1YZQ GNP 0.000000001438 0.74922 33.5294
435 1KAO GDP 0.000000002344 0.71571 33.5329
436 1NVU GTP 0.000000008421 0.71203 33.7349
437 1TX4 ALF GDP 0.0000007024 0.50796 33.8983
438 1TU3 GNP 0.000000001085 0.75216 33.9181
439 3MJH GTP 0.000000001784 0.56494 33.9286
440 1R2Q GNP 0.0000000004666 0.79167 34.1176
441 2WJH GDP 0.0000000004692 0.73513 34.3373
442 2WJH FLC 0.0000000575 0.64348 34.3373
443 5UFQ GNP 0.000000001452 0.56486 34.3373
444 1G16 GDP 0.00000003007 0.67387 34.7059
445 3BC1 GNP 0.000000003224 0.72934 35.3261
446 3UIE ANP 0.000004459 0.55634 35.8696
447 2FFQ GSP 0.000000001762 0.74494 36.413
448 1Z0J GTP 0.000000005995 0.538 36.4706
449 1YVD GNP 0.000000006207 0.54924 36.6864
450 3QBT GNP 0.000000003343 0.55562 36.7816
451 1NRJ GTP 0.000000001634 0.7305 36.9565
452 3RAB GNP 0.000000002633 0.73358 37.8698
453 2FH5 GTP 0.0000000003273 0.76351 40.2174
454 1P9B GDP 0.000011 0.54418 40.7609
455 1EK0 GNP 0.00000002044 0.69065 41.7647
456 1D5C GDP 0.0000000004683 0.74839 41.9753
457 1Z08 GNP 0.000000003735 0.5778 42.9412
458 1M2O GNP 0.000000002573 0.73407 47.8261
459 4M9Q GNP 0.000000000008309 0.67437 49.4565
460 1F6B GDP 0.000000000001572 0.84844 50
Pocket No.: 2; Query (leader) PDB : 3AQ4; Ligand: GDP; Similar sites found: 1
This union binding pocket(no: 2) in the query (biounit: 3aq4.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3WQT ANP 0.01439 0.40541 14.1304
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