Receptor
PDB id Resolution Class Description Source Keywords
3BOS 1.75 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HD (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.75 A RESO SHEWANELLA AMAZONENSIS P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES STRUCTGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI-2 HYDROLASE REGULATORDNA BINDIN
Ref.: A STRUCTURAL BASIS FOR THE REGULATORY INACTIVATION J.MOL.BIOL. V. 385 368 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CDP A:300;
B:300;
Valid;
Valid;
none;
none;
submit data
403.176 C9 H15 N3 O11 P2 C1=CN...
CL B:303;
Invalid;
none;
submit data
35.453 Cl [Cl-]
EDO A:303;
A:304;
A:305;
A:306;
A:307;
A:308;
A:309;
B:304;
B:305;
B:306;
B:307;
B:308;
B:309;
B:310;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
MG A:301;
B:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
NA B:302;
Part of Protein;
none;
submit data
22.99 Na [Na+]
SCN A:302;
Invalid;
none;
submit data
58.082 C N S C(#N)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3BOS 1.75 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HD (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.75 A RESO SHEWANELLA AMAZONENSIS P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES STRUCTGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI-2 HYDROLASE REGULATORDNA BINDIN
Ref.: A STRUCTURAL BASIS FOR THE REGULATORY INACTIVATION J.MOL.BIOL. V. 385 368 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 185 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CDP; Similar ligands found: 89
No: Ligand ECFP6 Tc MDL keys Tc
1 CDP 1 1
2 CTP 0.895522 1
3 C5P 0.787879 0.985507
4 CAR 0.787879 0.985507
5 C 0.787879 0.985507
6 7XL 0.77027 0.944444
7 C2G 0.74026 0.957747
8 CDC 0.725 0.82716
9 CDP MG 0.712329 0.90411
10 C5G 0.707317 0.944444
11 CDM 0.695122 0.894737
12 CXY 0.678571 0.944444
13 CTN 0.636364 0.857143
14 AR3 0.636364 0.857143
15 1AA 0.619565 0.906667
16 C C 0.607143 0.929577
17 UDP 0.605263 0.942029
18 I5A 0.602941 0.816901
19 YYY 0.582278 0.90411
20 GCQ 0.560976 0.90411
21 C3P 0.56 0.942857
22 MCN 0.557692 0.819277
23 PMT 0.554455 0.85
24 91P 0.553398 0.851852
25 UTP 0.54321 0.942029
26 2AA 0.542857 0.693878
27 16B 0.538462 0.917808
28 CSV 0.536842 0.905405
29 CSQ 0.536842 0.905405
30 DCP 0.535714 0.90411
31 C2P 0.519481 0.957143
32 PCD 0.517857 0.781609
33 FN5 0.509434 0.871795
34 GPC 0.509091 0.819277
35 CSF 0.504587 0.871795
36 DKZ 0.5 0.746667
37 UNP 0.488372 0.915493
38 TKW 0.4875 0.971429
39 G C 0.481818 0.8375
40 5GW 0.477778 0.890411
41 5HM 0.47561 0.958333
42 DC 0.463415 0.890411
43 DCM 0.463415 0.890411
44 U A C C 0.452174 0.846154
45 UPP 0.451613 0.888889
46 UDH 0.451613 0.844156
47 G8D 0.450549 0.907895
48 U5P 0.45 0.927536
49 C5P SIA 0.447368 0.893333
50 UPG 0.446809 0.888889
51 GUD 0.446809 0.888889
52 GDU 0.446809 0.888889
53 660 0.446809 0.876712
54 URM 0.446809 0.876712
55 UFM 0.446809 0.888889
56 8OD 0.445652 0.855263
57 G G G C 0.444444 0.85
58 UPU 0.444444 0.887324
59 4GW 0.443299 0.866667
60 A G C C 0.440678 0.848101
61 DOC 0.439024 0.890411
62 M7G 0.43617 0.829268
63 U2F 0.43299 0.842105
64 UFG 0.43299 0.842105
65 UPF 0.43299 0.842105
66 2KH 0.431818 0.915493
67 G C C C 0.42623 0.860759
68 CG2 0.421053 0.873418
69 A U C C 0.420635 0.835443
70 G3N 0.42 0.890411
71 UDP UDP 0.418605 0.885714
72 UDX 0.418367 0.888889
73 UAD 0.418367 0.888889
74 44P 0.416667 0.902778
75 3UC 0.415842 0.842105
76 M7M 0.412371 0.797619
77 8GT 0.410526 0.907895
78 V12 0.41 0.75
79 UGB 0.41 0.901408
80 USQ 0.41 0.780488
81 UGA 0.41 0.901408
82 DCP MG 0.408602 0.818182
83 UP5 0.405405 0.857143
84 GEO 0.405063 0.783784
85 CH 0.404762 0.942857
86 UDM 0.403846 0.864865
87 H6Y 0.402062 0.855263
88 NVG 0.401961 0.731707
89 CTP C C C C 0.4 0.915493
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3BOS; Ligand: CDP; Similar sites found: 507
This union binding pocket(no: 1) in the query (biounit: 3bos.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2FFQ GSP 0.0001105 0.51892 None
2 1G16 GDP 0.0002737 0.49164 None
3 1D5C GDP 0.00003903 0.46298 None
4 4QRH 0O2 0.004244 0.43179 None
5 3BER AMP 0.009139 0.40304 0.826446
6 2PZE ATP 0.000003036 0.50235 0.873362
7 1YZG GDP 0.00003417 0.5195 1.11732
8 4V0K GDP 0.0001824 0.40193 1.18343
9 5HCN GCP 0.0002031 0.46859 1.23967
10 3Q9L ATP 0.001882 0.40208 1.23967
11 4WOP CTP 0.0006505 0.47128 1.33333
12 1XPJ TLA 0.005134 0.45468 1.5873
13 2BME GNP 0.0001052 0.51807 1.6129
14 1Y63 ADP 0.00003531 0.5156 1.63043
15 2ZEJ GDP 0.0001455 0.51299 1.63043
16 3AQ4 GDP 0.00004095 0.49812 1.63043
17 2WIC GNP 0.00002727 0.50576 1.65289
18 2PZ8 APC 0.01396 0.40833 1.65289
19 1Z0F GDP 0.00004158 0.49765 1.67598
20 3E5H GNP 0.001512 0.46086 1.68539
21 4YLG GDP 0.00004351 0.52315 1.7341
22 3B7G ANP 0.0006751 0.44657 1.73913
23 1O3Y GTP 0.00009182 0.41463 1.80723
24 2J59 GTP 0.0001165 0.41168 1.80723
25 1J2J GTP 0.0001406 0.40927 1.80723
26 1RE0 GDP 0.00001291 0.52295 1.82927
27 1VG8 GNP 0.0002022 0.50589 1.93237
28 2NCD ADP 0.000006576 0.5753 2.06612
29 1YQT ADP 0.0000113 0.56243 2.06612
30 3DC4 ADP 0.00001551 0.54854 2.06612
31 2QEN ADP 0.00001344 0.5476 2.06612
32 3A4M ADP 0.0000173 0.54621 2.06612
33 5H56 TYD 0.0001333 0.52014 2.06612
34 5H56 ADP 0.0001333 0.52014 2.06612
35 3QKT ANP 0.0001702 0.50581 2.06612
36 3ZQ6 ADP ALF 0.0002623 0.50028 2.06612
37 2DPY ADP 0.0002971 0.48546 2.06612
38 5MEX SZZ 0.01009 0.43387 2.06612
39 5MEX PAP 0.003722 0.43261 2.06612
40 5IRR GSP 0.0001332 0.42387 2.06612
41 4GOX A3P 0.0003582 0.40154 2.06612
42 1AZT GSP 0.00003745 0.40082 2.06612
43 5KSP GDP 0.00006737 0.48859 2.10526
44 2X77 GDP 0.00007968 0.4859 2.1164
45 1VG1 GDP 0.00006968 0.50497 2.16216
46 1Z0A GDP 0.00006083 0.51071 2.29885
47 2FH5 GTP 0.00002996 0.44841 2.33645
48 1Z08 GNP 0.0003599 0.40109 2.35294
49 2B8W ALF 5GP 0.00002687 0.54523 2.47934
50 3B5J 12D 0.00001951 0.54365 2.47934
51 4PFO ADP 0.00006063 0.52989 2.47934
52 5X40 ACP 0.0001822 0.50234 2.47934
53 1ZJ6 G3D 0.00003235 0.50226 2.47934
54 1FP6 ADP 0.00006109 0.46711 2.47934
55 4P4T GDP 0.00003546 0.45666 2.47934
56 3KJI ADP 0.001436 0.44815 2.47934
57 1B0U ATP 0.0002022 0.44573 2.47934
58 1AQU A3P 0.002728 0.43705 2.47934
59 1A5Z FBP 0.008141 0.42149 2.47934
60 1F5N GNP 0.00002654 0.41593 2.47934
61 4BAS GNP 0.00006771 0.52118 2.51256
62 2CBZ ATP 0.0000004742 0.65469 2.53165
63 1V2X SAM 0.007018 0.42118 2.57732
64 2IXE ATP 0.00005102 0.42832 2.58303
65 3H86 AP5 0.008794 0.43362 2.60417
66 5KUT GDP 0.00004645 0.51324 2.6455
67 2HF9 GSP 0.00004349 0.46399 2.65487
68 3GJ0 GDP 0.00007176 0.50124 2.71493
69 4MKG AP5 0.000379 0.50978 2.76498
70 3CH5 GDP 0.000101 0.48094 2.77778
71 2OFW ADX 0.0003417 0.51087 2.88462
72 1JJ7 ADP 0.0000002819 0.66468 2.89256
73 3WY9 GDP 0.000008964 0.55152 2.89256
74 3WYA GDP 0.00001346 0.53513 2.89256
75 1RRC ADP 0.000003147 0.50304 2.89256
76 2IS6 ADP 0.00007854 0.49942 2.89256
77 5J1J ANP 0.0002156 0.49877 2.89256
78 5VGR GDP 0.00002561 0.47576 2.89256
79 4IDN GNP 0.00002546 0.44649 2.89256
80 4KBF AMP 0.002713 0.42226 2.89256
81 1DL5 SAH 0.025 0.40316 2.89256
82 3P4X ADP 0.00007595 0.49066 2.90557
83 3W5J GDP 0.000001334 0.61684 2.94118
84 1OE0 TTP 0.001077 0.46984 3.04348
85 5MVR ADP 0.00002515 0.52247 3.08642
86 3REF GDP 0.0001337 0.41753 3.09278
87 2A5J GDP 0.0001003 0.46879 3.14136
88 1NN5 ANP 0.0001098 0.52603 3.25581
89 1NN5 2DT 0.01909 0.43892 3.25581
90 4TMK T5A 0.01108 0.42731 3.28639
91 4Q1A UDP 0.0001944 0.58232 3.30579
92 4Q1A 2XZ 0.0001944 0.58232 3.30579
93 2OG2 MLI 0.0000554 0.54432 3.30579
94 3WXM GTP 0.00009652 0.51991 3.30579
95 1UJ2 ADP 0.0001115 0.51873 3.30579
96 5UQW GDP 0.00009991 0.51719 3.30579
97 1UJ2 C5P 0.0001297 0.51547 3.30579
98 3B9Q MLI 0.0001476 0.51491 3.30579
99 1OXV ANP 0.00002308 0.51142 3.30579
100 4ZG4 VO4 ADP 0.0001465 0.50698 3.30579
101 2CJW GDP 0.00005871 0.50531 3.30579
102 4HSE ADP 0.00002921 0.50458 3.30579
103 2ZFI ADP 0.00006397 0.50357 3.30579
104 4R98 GNH 0.0001387 0.48791 3.30579
105 2FNA ADP 0.000002497 0.48073 3.30579
106 1KO8 6PG 0.0003864 0.48004 3.30579
107 5LB3 ADP 0.0003699 0.45959 3.30579
108 3EC1 GDP 0.0006827 0.45842 3.30579
109 2IYL GDP 0.000716 0.45468 3.30579
110 5WRJ A3P 0.002018 0.45297 3.30579
111 5WRI A3P 0.00205 0.44904 3.30579
112 2ZTS ADP 0.0001491 0.42949 3.30579
113 4PJ3 ANP 0.0007641 0.42708 3.30579
114 2FSH ANP 0.002617 0.42185 3.30579
115 5L3R GCP 0.0003593 0.40126 3.30579
116 2EFE GNH 0.0001382 0.45442 3.31492
117 2PEZ DAT 0.0001902 0.51556 3.35196
118 2PEZ GGZ 0.0001902 0.51556 3.35196
119 4BQS ADP 0.00002857 0.51989 3.40909
120 4BQS K2Q 0.000299 0.50992 3.40909
121 1S9D GDP 0.00002953 0.50415 3.44828
122 3UIE ANP 0.00006405 0.47642 3.5
123 1F6B GDP 0.00004478 0.49651 3.53535
124 4KAX GTP 0.00007639 0.51863 3.5503
125 1ZUI SKM 0.0002496 0.51393 3.57143
126 1I4D GDP 0.00007719 0.50677 3.64583
127 1XX6 ADP 0.0001329 0.48876 3.66492
128 4MKF AP5 0.0004318 0.50805 3.68664
129 3N5C GDP 0.00002263 0.52461 3.7037
130 1GOJ ADP 0.0000009271 0.63887 3.71901
131 2XT3 ADP 0.000002406 0.60586 3.71901
132 2XTZ GSP 0.00007407 0.5256 3.71901
133 4ZNL BEF ADP 0.00003294 0.52025 3.71901
134 5M04 GDP 0.00001575 0.51937 3.71901
135 2QZ4 ADP 0.000007622 0.51846 3.71901
136 3MD0 GDP 0.00004713 0.51703 3.71901
137 1MKY GDP 0.00004062 0.51277 3.71901
138 4ZKD GDP 0.0002629 0.50024 3.71901
139 3IO3 ADP 0.0002049 0.49331 3.71901
140 5MZN ADP 0.0006536 0.46862 3.71901
141 5L3W GDP 0.0007128 0.46016 3.71901
142 2ZE7 DST 0.001862 0.45804 3.71901
143 2ZE7 AMP 0.001725 0.45804 3.71901
144 5JCP GDP ALF 0.00009909 0.44696 3.71901
145 4H1V GNP 0.000701 0.42113 3.71901
146 4P32 ADP 0.0001548 0.41288 3.71901
147 1OYY AGS 0.008179 0.4053 3.71901
148 1YRB GDP 0.00004677 0.46966 3.81679
149 2F3R G5P 0.03067 0.40352 3.86473
150 3A1S GDP 0.0001602 0.47274 3.87597
151 1FHX 4IP 0.007183 0.41734 3.87597
152 2BCG GDP 0.0001568 0.43264 3.8835
153 4XTR ADP 0.0001504 0.49978 3.91304
154 4XTR ATP 0.0002056 0.49978 3.91304
155 4XVU ATP 0.0003064 0.49129 3.91304
156 1UKZ ADP 0.0009477 0.48165 3.94089
157 4M9Q GNP 0.0001123 0.42103 3.96476
158 2F9L GDP 0.0001839 0.40592 4.0201
159 2HT6 GDP 0.00002734 0.50868 4.02299
160 2B8T THM 0.002966 0.44122 4.03587
161 3T1O GDP 0.00002107 0.53248 4.0404
162 3T12 GDP ALF 0.00004732 0.43157 4.0404
163 2HV8 GTP 0.0001954 0.50478 4.06977
164 1XEX ATP 0.00006448 0.40391 4.06977
165 3PQC GDP 0.00004659 0.48242 4.10256
166 1G6H ADP 0.0000006251 0.64325 4.13223
167 3U6B GDP 0.000007575 0.55502 4.13223
168 1BG2 ADP 0.00000008484 0.53828 4.13223
169 1SVK ALF GDP 0.0000693 0.53441 4.13223
170 5JBQ GDP 0.00001664 0.53082 4.13223
171 4G5G GDP 0.00001849 0.5287 4.13223
172 1D8T GDP 0.00002021 0.52689 4.13223
173 3U6K GDP 0.00002592 0.52185 4.13223
174 3CNL GNP 0.00004911 0.51617 4.13223
175 4PC3 GDP 0.00005786 0.51456 4.13223
176 1PUJ GNP 0.00006988 0.51065 4.13223
177 2GDJ ANP 0.00005547 0.50646 4.13223
178 3E70 GDP 0.0002649 0.47774 4.13223
179 2BVN GNP 0.00003706 0.47451 4.13223
180 3DKP ADP 0.000319 0.47105 4.13223
181 3RC3 ANP 0.001395 0.4466 4.13223
182 1FQK GDP 0.00002911 0.43677 4.13223
183 1FQJ GDP 0.0000364 0.43456 4.13223
184 3Q9T FAY 0.01955 0.41999 4.13223
185 3VX3 ADP 0.000934 0.41052 4.13223
186 2CNT COA 0.02251 0.40124 4.13223
187 2KIN ADP 0.000000123 0.53341 4.20168
188 4GOJ GNP 0.00009027 0.5151 4.2328
189 4DSU GDP 0.0002348 0.50267 4.2328
190 2J0V GDP 0.00008733 0.50037 4.24528
191 1FZQ GDP 0.00003358 0.51662 4.41989
192 1DS6 GDP 0.00008445 0.49795 4.44444
193 2GCO GNP 0.00008545 0.50912 4.47761
194 2GCN GDP 0.0001289 0.50757 4.47761
195 4B5P ACO 0.02742 0.40113 4.5
196 4ZI2 GNP 0.0001039 0.51212 4.51128
197 1XTQ GDP 0.0001161 0.51192 4.51977
198 1ZCB GDP 0.00002684 0.54738 4.54545
199 3AB3 GDP 0.00004952 0.52547 4.54545
200 1SQ5 ADP 0.00001413 0.51925 4.54545
201 3EWA ANP 0.00003287 0.51705 4.54545
202 5CK5 GDP 0.00003148 0.5066 4.54545
203 2Q2Y MKR 0.0004464 0.50488 4.54545
204 2Q2Y ADP 0.0004713 0.50488 4.54545
205 4U00 ADP 0.000001048 0.50386 4.54545
206 5LTJ ADP 0.00007909 0.50239 4.54545
207 2VVG ADP 0.000001015 0.50155 4.54545
208 1WF3 GNP 0.0002663 0.49996 4.54545
209 4TTQ ATP 0.000134 0.48861 4.54545
210 4LPS GDP 0.00009834 0.48121 4.54545
211 2D2F ADP 0.00007246 0.42548 4.54545
212 2J5V PCA 0.03873 0.40175 4.54545
213 2C04 GCP 0.002322 0.40127 4.54545
214 1JI0 ATP 0.00002484 0.53849 4.58333
215 4YMU ATP 0.00001916 0.516 4.58333
216 3T5G GDP 0.00005471 0.51289 4.60526
217 1KSH GDP 0.0001076 0.50914 4.60526
218 3KTA AP5 0.00003057 0.47725 4.62428
219 5TB5 GDP 0.0001284 0.49537 4.66667
220 5XCO GDP 0.00009025 0.50537 4.67836
221 5EE5 GTP 0.0001596 0.50305 4.67836
222 5WDR GNP 0.0004445 0.48892 4.67836
223 5TAR GDP 0.0001361 0.45239 4.72973
224 1M7G AV2 0.00001244 0.52372 4.73934
225 1M7G ADX 0.000123 0.52354 4.73934
226 1M7G ADP 0.0001253 0.51979 4.73934
227 4KVG GTP 0.0001483 0.5107 4.7619
228 4R2I ANP 0.0008983 0.43502 4.7619
229 3X1Z GNP 0.0005376 0.48651 4.79042
230 5UFQ GNP 0.0001462 0.51101 4.81928
231 1CLU DBG 0.0005661 0.50308 4.81928
232 1NVU GTP 0.0002578 0.50066 4.81928
233 3Q72 GNP 0.00008022 0.48865 4.81928
234 3KUD GDP 0.0001554 0.42371 4.81928
235 1WQ1 GDP 0.0001404 0.40996 4.81928
236 1WQ1 AF3 0.02369 0.40028 4.81928
237 5IRC GDP 0.0004438 0.46989 4.83871
238 5HPY GDP 0.00008321 0.50967 4.86486
239 3LXR GDP 0.00007585 0.47314 4.86486
240 5DI3 GNP 0.0001638 0.41732 4.86486
241 1GWN GTP 0.00006011 0.52139 4.87805
242 1KMQ GNP 0.0001193 0.51135 4.8913
243 4P3Y GDP 0.000008659 0.53077 4.94506
244 1CXZ GSP 0.00008613 0.51609 4.94506
245 1KY3 GDP 0.0001585 0.49373 4.94506
246 4AG5 ADP 0.00004022 0.53445 4.95868
247 1CR1 TTP 0.00003457 0.53303 4.95868
248 3VMF GTP 0.00006532 0.52829 4.95868
249 2FAH GDP 0.00006465 0.51226 4.95868
250 1OW3 GDP 0.00008595 0.509 4.95868
251 1F9V ADP 0.000008587 0.50267 4.95868
252 2OBM ADP 0.002954 0.44243 4.95868
253 2R0D 4IP 0.003177 0.43482 4.95868
254 1D2N ANP 0.0001594 0.4291 4.95868
255 1YTM ATP 0.0001489 0.42426 4.95868
256 4IOK ADP 0.01175 0.41964 4.95868
257 4IOK XPO 0.0117 0.41534 4.95868
258 1H65 GDP 0.00025 0.41193 4.95868
259 2WKQ GTP 0.0001176 0.4112 4.95868
260 2RGH FAD 0.04491 0.40375 4.95868
261 3R7F CP 0.017 0.40184 4.95868
262 2R09 4IP 0.005567 0.40046 4.95868
263 2EW1 GNP 0.0002424 0.49627 4.97512
264 4XOI GTP 0.0001494 0.50859 5
265 4XSH GSP 0.0001037 0.50757 5.02793
266 1NRJ GTP 0.00003354 0.53367 5.04587
267 2W83 GTP 0.00008365 0.41583 5.19481
268 1W7J ADP BEF 0.00008304 0.44962 5.29801
269 3NHB ADP 0.00000702 0.57377 5.3719
270 4WZ6 ATP 0.000008591 0.56982 5.3719
271 2CE7 ADP 0.000003613 0.5687 5.3719
272 1XP8 AGS 0.00002067 0.53416 5.3719
273 1R0X ATP 0.0000355 0.50405 5.3719
274 3FWY ADP 0.0001192 0.5022 5.3719
275 5KSZ GCP 0.000107 0.49911 5.3719
276 1G41 ADP 0.0000643 0.47906 5.3719
277 1G6O ADP 0.00006464 0.47626 5.3719
278 1ZD9 GDP 0.00002095 0.46331 5.3719
279 2G77 GDP 0.0000715 0.45368 5.3719
280 2ZJ5 ADP 0.01842 0.40013 5.3719
281 1M7B GTP 0.00006528 0.43393 5.43478
282 1GOT GDP 0.000012 0.45528 5.47945
283 1GXU 2HP 0.001355 0.43494 5.49451
284 1LVG ADP 0.000004745 0.52853 5.55556
285 4LJ9 ACP 0.0007048 0.455 5.60472
286 2A5F GTP 0.000135 0.51075 5.69948
287 4YDS ATP 0.00001078 0.55632 5.70175
288 4D0G GTP 0.0001071 0.51148 5.71429
289 3TNF GNP 0.0002158 0.50626 5.74713
290 4CVN ADP 0.00004668 0.52501 5.75916
291 2NGR GDP 0.0000551 0.50976 5.75916
292 1OIX GDP 0.0001815 0.50636 5.75916
293 1OIV GDP 0.0002965 0.49584 5.75916
294 4ITR GDP 0.000232 0.49071 5.75916
295 1A4R GNH 0.00007007 0.45366 5.75916
296 1GRN GDP 0.00008611 0.44906 5.75916
297 1A4R GDP 0.00007719 0.44249 5.75916
298 4PPF FLC 0.000001008 0.62446 5.78512
299 5M7P ADP 0.00003711 0.52906 5.78512
300 2V7Q ADP 0.00001863 0.52854 5.78512
301 1W0J ADP 0.00003129 0.52726 5.78512
302 2ZR9 DTP 0.00002021 0.5269 5.78512
303 5TSH ANP 0.00002205 0.52513 5.78512
304 1W0J ADP BEF 0.0000582 0.51965 5.78512
305 5I0H ADP BEF 0.0001128 0.50814 5.78512
306 1LFD GNP 0.0002422 0.50017 5.78512
307 5G41 AP5 0.0007732 0.49926 5.78512
308 2V7Q ATP 0.00002604 0.49327 5.78512
309 5TSH ADP 0.00002932 0.48656 5.78512
310 4LYA ATP 0.00009795 0.48193 5.78512
311 1VKJ A3P 0.001964 0.44802 5.78512
312 2CK3 ANP 0.00007443 0.44767 5.78512
313 2CK3 ADP 0.00002215 0.43814 5.78512
314 3NKS FAD 0.03991 0.42852 5.78512
315 1IHU AF3 0.0001643 0.41766 5.78512
316 1IHU ADP 0.0001814 0.40931 5.78512
317 4D42 NAP 0.04966 0.4084 5.78512
318 4D42 W0I 0.04966 0.4084 5.78512
319 3PCR GTP 0.0002141 0.40571 5.78512
320 1Z0K GTP 0.0001 0.41324 5.81395
321 3RWO GDP 0.0002078 0.50346 5.94595
322 4DKX GDP 0.0000493 0.50884 6.01852
323 4HI0 GDP 0.00001174 0.46282 6.03015
324 3DOE GTP 0.0001233 0.41125 6.06061
325 4FCW ADP 0.00007048 0.50474 6.10932
326 5JCZ GDP 0.0001008 0.43827 6.14525
327 1SVI GDP 0.00002466 0.51064 6.15385
328 4U5X GNP 0.0001651 0.49784 6.17978
329 5HR5 ADP 0.00001509 0.54518 6.19835
330 1XMV ADP 0.000009948 0.54467 6.19835
331 3ZFD ANP 0.00003998 0.51933 6.19835
332 4DCT GDP 0.00007148 0.48758 6.19835
333 1ION ADP 0.0004342 0.47035 6.19835
334 1FNN ADP 0.00001781 0.46977 6.19835
335 4PX9 ADP 0.0004853 0.4538 6.19835
336 1NHX PEP 0.01052 0.43789 6.19835
337 1NHX FTB 0.01095 0.43789 6.19835
338 3BFX A3P 0.0006464 0.41355 6.19835
339 5HR5 FLC 0.02047 0.41253 6.19835
340 1S8F GDP 0.0001634 0.46004 6.21469
341 1CS4 GSP 0.0000336 0.40712 6.22222
342 1HTW ADP 0.00003665 0.51807 6.32911
343 4C4P GNP 0.000223 0.50379 6.35838
344 5SZH GNP 0.0001884 0.50742 6.40394
345 4KVX ACO 0.02562 0.40128 6.41026
346 3FB4 AP5 0.0004608 0.50539 6.48148
347 5N69 ADP 0.00005861 0.51429 6.53266
348 1TX4 ALF GDP 0.00022 0.40254 6.56566
349 2D7C GTP 0.0001662 0.50825 6.58683
350 1KAO GDP 0.0001683 0.49502 6.58683
351 4KFU ACP 0.000002907 0.5222 6.60377
352 3GJX GTP 0.0001374 0.51422 6.61157
353 3TK1 GDP 0.00007828 0.51396 6.61157
354 1R6B ADP 0.00005599 0.50943 6.61157
355 2XAU ADP 0.0002966 0.47818 6.61157
356 1NST A3P 0.0005605 0.46999 6.61157
357 2ZPT A3P 0.0113 0.44456 6.61157
358 1WDT GTP 0.0001297 0.43465 6.61157
359 3FVQ ATP 0.0001429 0.42251 6.61157
360 3BD9 A3P 0.003539 0.41537 6.61157
361 1JBW ACQ 0.02705 0.40632 6.61157
362 1JBW TMF 0.03108 0.40543 6.61157
363 3TKL GTP 0.0001322 0.40257 6.63265
364 1G3Q ADP 0.0004469 0.4523 6.75105
365 4E03 ADP 0.0002547 0.47854 6.79612
366 3IUY AMP 0.005189 0.41701 7.01754
367 2C77 GNP 0.00004655 0.52677 7.02479
368 4LX0 BEF GDP 0.0002401 0.50219 7.02479
369 5GOE GDP 0.00001751 0.49997 7.02479
370 4LC1 GDP 0.0000795 0.49917 7.02479
371 4D0N GDP 0.00008104 0.49878 7.02479
372 2RCN GDP 0.0001101 0.49258 7.02479
373 3EZ2 ADP 0.0009099 0.45549 7.02479
374 2C78 GNP 0.00005686 0.4287 7.02479
375 1BO4 COA 0.003352 0.4234 7.14286
376 1Z2A GDP 0.0001347 0.41231 7.14286
377 3SFV GDP 0.0001912 0.49704 7.18232
378 2PL3 ADP 0.0003856 0.47334 7.20339
379 3IIJ ADP 0.00006732 0.50254 7.22222
380 2W2X GSP 0.0000812 0.51506 7.25806
381 2Y8E GNP 0.0001069 0.40109 7.26257
382 3NKV GNP 0.000159 0.41427 7.42857
383 2WHX ADP 0.00002863 0.54268 7.43802
384 5IRN ADP 0.00002042 0.53608 7.43802
385 1MH1 GNP 0.000205 0.5056 7.43802
386 2FJU GSP 0.0001505 0.50208 7.43802
387 1RYH GNP 0.0001133 0.49793 7.43802
388 5GJC ATP 0.000119 0.49101 7.43802
389 2JLR ANP 0.0002645 0.48314 7.43802
390 3BFV ADP 0.0002289 0.47776 7.43802
391 1XKV ATP 0.0003238 0.47637 7.43802
392 5K5Z ANP 0.0007002 0.47559 7.43802
393 4DID GDP 0.0001633 0.47211 7.43802
394 1Z6T ADP 0.0001108 0.44604 7.43802
395 1HE1 GDP 0.00004282 0.44594 7.43802
396 1G4U GDP 0.00009628 0.4419 7.43802
397 4TMZ GSP 0.00006945 0.41956 7.43802
398 1YZQ GNP 0.00009816 0.52147 7.64706
399 3RAB GNP 0.00008713 0.52211 7.69231
400 4OI4 ATP 0.00006177 0.42835 7.82609
401 4D81 ADP 0.000003477 0.57268 7.85124
402 1NJF ADP 0.00003108 0.53277 7.85124
403 1NJF AGS 0.00005911 0.52406 7.85124
404 4K81 GTP 0.0002176 0.50609 7.85124
405 2OZE AGS 0.0003922 0.47973 7.85124
406 4IHQ ADP 0.0001404 0.47816 7.85124
407 4XGU ADP 0.0001046 0.4546 7.85124
408 1T8U A3P 0.001971 0.44795 7.85124
409 1T8U UAP SGN IDS SGN 0.006082 0.44736 7.85124
410 4A4Z ANP 0.002598 0.42857 7.85124
411 2WPX ACO 0.0132 0.40414 7.85124
412 5BXQ GDP 0.0001065 0.49633 7.87402
413 1Z06 GNP 0.0001244 0.40404 7.93651
414 2WJG GDP 0.00006987 0.50178 7.97872
415 4V03 ADP 0.0004844 0.4681 8.17121
416 1TU3 GNP 0.00009791 0.51961 8.18713
417 4QM7 GTP 0.00007372 0.5007 8.18713
418 1JJV ATP 0.0000253 0.54376 8.25243
419 1VHT BA3 0.0005208 0.4422 8.25688
420 3LRE ADP 0.00000103 0.63274 8.26446
421 4J0Q GDP 0.00001178 0.54585 8.26446
422 3H4S ADP 0.000001425 0.51486 8.26446
423 4FRZ ADP 0.000005638 0.5094 8.26446
424 4RZ3 ADP 0.001766 0.4461 8.26446
425 2XTN GTP 0.0001744 0.40896 8.54701
426 3M1I GTP 0.0001035 0.52032 8.67769
427 3WYF GTP 0.0001575 0.51308 8.67769
428 2VF7 ADP 0.00006507 0.50637 8.67769
429 3COB ADP 0.00000344 0.50185 8.67769
430 4R43 GDP 0.0001077 0.49302 8.67769
431 1B7T ADP 0.0001051 0.46777 8.67769
432 1KK8 BEF ADP 0.000102 0.44641 8.67769
433 3ZIA ADP 0.0000132 0.5451 8.69565
434 3ZIA ATP 0.00002567 0.52533 8.69565
435 2WJH GDP 0.00032 0.47388 9.03614
436 2WJH FLC 0.0004656 0.46891 9.03614
437 2ZPA ADP 0.0001585 0.49868 9.09091
438 1K6M AGS 0.00002489 0.43738 9.09091
439 1TQ4 GDP 0.00006754 0.4351 9.09091
440 2D7D ADP 0.001955 0.43433 9.09091
441 4YNU FAD 0.0148 0.43274 9.09091
442 4YNU LGC 0.01703 0.43274 9.09091
443 2ZPA ACO 0.0175 0.40513 9.09091
444 5E95 GDP 0.0001729 0.43782 9.27835
445 1L2T ATP 0.00006222 0.4107 9.3617
446 3CPJ GDP 0.0001723 0.49199 9.41704
447 3Q85 GNP 0.00007448 0.50049 9.46746
448 2WMO GTP 0.0001203 0.46555 9.47368
449 2AWN ADP 0.0000005317 0.64961 9.50413
450 1TAD GDP 0.00007414 0.5312 9.50413
451 1TAD ALF 0.00007414 0.5312 9.50413
452 2BIF ANP 0.000243 0.51167 9.50413
453 2BIF SIN 0.0004072 0.51167 9.50413
454 1DR1 NAP 0.02673 0.4129 9.52381
455 1DR1 HBI 0.02673 0.4129 9.52381
456 4NON GDP 0.00009483 0.4956 9.61539
457 5FTB ANP 0.00005203 0.48136 9.91736
458 5FHD ADP ALF 0.00003805 0.44556 9.91736
459 4WEI GLC GAL 0.00404 0.43497 9.91736
460 3RLF ANP 0.00007314 0.41692 9.91736
461 4YC7 GNP 0.0001112 0.51069 9.94475
462 3TBK ANP 0.001596 0.42537 10.3306
463 2C9O ADP 0.000002882 0.48823 10.7438
464 1NF3 GNP 0.0001405 0.40176 11.157
465 1ZC3 GNP 0.0002488 0.50143 11.5044
466 1JWY ADP 0.00006255 0.48943 11.5702
467 1JWY GDP 0.0000378 0.47609 11.5702
468 2A9K GDP 0.0001207 0.50193 11.7647
469 1QHH ATP 0.001575 0.42959 11.8343
470 2W58 ADP 0.000002958 0.60557 11.8812
471 4WZA ADP 0.0006639 0.51464 11.9835
472 4WZA ACP 0.0006639 0.51464 11.9835
473 5HGZ ACO 0.01579 0.41037 11.9835
474 2UZI GTP 0.0001353 0.51266 12.5
475 1UAD GNP 0.0002149 0.50275 12.5714
476 1MR3 G3D 0.0001239 0.49324 12.7072
477 3DEF GDP 0.0001795 0.44922 12.8099
478 1U8Z GDP 0.0002668 0.40099 13.0952
479 1M2O GNP 0.0001229 0.51474 13.1579
480 1OFH ADP 0.00004702 0.516 13.6364
481 2GK6 ADP 0.002795 0.43756 13.6364
482 5H67 ATP 0.001508 0.44226 13.75
483 4OHY ANP 0.00004575 0.42539 14.4628
484 2VB6 ADP BEF 0.0001317 0.50925 14.7651
485 5L3V GDP 0.0001199 0.49677 14.876
486 5L3S GNP 0.0002785 0.49529 14.876
487 1T5C ADP 0.0000003266 0.519 15.2893
488 1V8K ANP 0.00001811 0.52912 15.7025
489 3QF7 ANP 0.0001264 0.50342 16
490 5BQ5 ADP BEF 0.000001661 0.54614 16.4021
491 1VG0 GDP 0.0002041 0.48849 16.9421
492 1VG9 GDP 0.0002233 0.48122 16.9421
493 2OM2 GDP 0.000006332 0.47203 17.3554
494 5KDO GDP 0.00001449 0.46203 17.3554
495 1GP2 GDP 0.00001625 0.44348 17.3554
496 1Y3A GDP 0.00003449 0.42973 17.3554
497 1J99 AND 0.0134 0.4231 17.3554
498 2PWY SAH 0.02315 0.40064 17.4419
499 2ODE ALF GDP 0.00005218 0.53883 17.7686
500 5IFS ADP 0.000005784 0.55903 18.1818
501 3HU3 AGS 0.02798 0.45396 18.1818
502 1UPT GTP 0.0001982 0.49847 18.3333
503 5XDR ADP 0.000481 0.45186 19.0083
504 3FKQ ATP 0.0007756 0.41577 19.0083
505 3BC1 GNP 0.0001212 0.51502 20.339
506 2QTV GNP 0.00006515 0.52632 20.4082
507 4HDQ GNP 0.0007491 0.47767 23.0769
Pocket No.: 2; Query (leader) PDB : 3BOS; Ligand: CDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3bos.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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