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Receptor
PDB id Resolution Class Description Source Keywords
3DKP 2.1 Å EC: 3.6.1.- HUMAN DEAD-BOX RNA-HELICASE DDX52, CONSERVED DOMAIN I IN COM ADP HOMO SAPIENS RNA HELICASE DEAD ADP STRUCTURAL GENOMICS STRUCTURAL GENCONSORTIUM SGC RRNA ATP-BINDING HYDROLASE NUCLEOTIDE-BNUCLEUS PHOSPHOPROTEIN RNA-BINDING
Ref.: COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX R HELICASES. PLOS ONE V. 5 12791 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP A:403;
A:402;
Valid;
Valid;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
GOL A:404;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MG A:401;
Invalid;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3DKP 2.1 Å EC: 3.6.1.- HUMAN DEAD-BOX RNA-HELICASE DDX52, CONSERVED DOMAIN I IN COM ADP HOMO SAPIENS RNA HELICASE DEAD ADP STRUCTURAL GENOMICS STRUCTURAL GENCONSORTIUM SGC RRNA ATP-BINDING HYDROLASE NUCLEOTIDE-BNUCLEUS PHOSPHOPROTEIN RNA-BINDING
Ref.: COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX R HELICASES. PLOS ONE V. 5 12791 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 28 families.
1 3DKP - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 26 families.
1 3DKP - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 24 families.
1 4KBF - AMP C10 H14 N5 O7 P c1nc(c2c(n....
2 5GVR - LMR C4 H6 O5 C([C@@H](C....
3 3B7G - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
4 3MWK - 8OP C10 H14 N5 O8 P c1nc(c2c(n....
5 3NBF - 8OP C10 H14 N5 O8 P c1nc(c2c(n....
6 3DKP - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
7 3IUY - AMP C10 H14 N5 O7 P c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3DKP; Ligand: ADP; Similar sites found with APoc: 689
This union binding pocket(no: 1) in the query (biounit: 3dkp.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 1KY3 GDP None
2 1YZN GNP None
3 2BME GNP None
4 1R2Q GNP None
5 2CJW GDP None
6 1MR3 G3D None
7 3MJH GTP None
8 2HT6 GDP None
9 1EK0 GNP None
10 3T34 GDP None
11 2O66 FLC None
12 3NOJ PYR 0.840336
13 1KAO GDP 1.1976
14 4B47 GDP 1.22449
15 5C9P FUC 1.22449
16 1H65 GDP 1.22449
17 5MVR ADP 1.23457
18 4QRH 0O2 1.42857
19 1Y63 ADP 1.63043
20 4LC1 GDP 1.63265
21 1J99 AND 1.63265
22 2XZ9 PYR 1.63265
23 2CBZ ATP 1.68776
24 5EE5 GTP 1.75439
25 1UPT GTP 1.75439
26 3RAB GNP 1.77515
27 3GJ8 GDP 1.80995
28 3GJ0 GDP 1.80995
29 3GJ3 GDP 1.80995
30 3GJ4 GDP 1.80995
31 3GJ5 GDP 1.80995
32 1R4A GNP 1.81818
33 1VG8 GNP 1.93237
34 4ZNL BEF ADP 2.04082
35 1WDT GTP 2.04082
36 5K5Z ANP 2.04082
37 3TKL GTP 2.04082
38 4RD0 GDP 2.04082
39 1E2K TMC 2.04082
40 6CS8 F9Y 2.04082
41 5W7Q GDP 2.04082
42 2QN6 GDP 2.04082
43 2WKQ GTP 2.04082
44 4BFW ZVW 2.04082
45 5TIV A3P 2.04082
46 1U0J ADP 2.04082
47 3KJI ADP 2.04082
48 1M5B BN1 2.04082
49 3REF GDP 2.06186
50 1MH1 GNP 2.15054
51 1VG1 GDP 2.16216
52 5Z2M GTP 2.27273
53 1AKY AP5 2.27273
54 1VHT BA3 2.29358
55 4MKG AP5 2.30415
56 1G16 GDP 2.35294
57 2J0V GDP 2.35849
58 2OFW ADX 2.40385
59 1JJV ATP 2.42718
60 3E70 GDP 2.44898
61 2QZ4 ADP 2.44898
62 1WF3 GNP 2.44898
63 2AWN ADP 2.44898
64 4NON GDP 2.44898
65 1GOJ ADP 2.44898
66 5I34 GDP 2.44898
67 3A1S GDP 2.44898
68 2GWH A3P 2.44898
69 4V03 ADP 2.44898
70 2D2F ADP 2.44898
71 5KSP GDP 2.44898
72 3EZ2 ADP 2.44898
73 4FCW ADP 2.44898
74 4ITM ATP 2.44898
75 2OG2 MLI 2.44898
76 3B9Q MLI 2.44898
77 5I0H ADP BEF 2.44898
78 4LJ9 ACP 2.44898
79 3B5J 12D 2.46914
80 3QXC ATP 2.47934
81 1E96 GTP 2.60417
82 1OE0 TTP 2.6087
83 2HF9 GSP 2.65487
84 3SBD GNP 2.6738
85 4NU0 AP5 2.76498
86 3IIJ ADP 2.77778
87 2PEZ DAT 2.7933
88 2PEZ GGZ 2.7933
89 1TQ4 GDP 2.85714
90 4P4T GDP 2.85714
91 5MZN ADP 2.85714
92 4KVA GTP 2.85714
93 1OXV ANP 2.85714
94 1Q20 PLO 2.85714
95 1Q20 A3P 2.85714
96 3WYA GDP 2.85714
97 3AB3 GDP 2.85714
98 1TAD ALF 2.85714
99 1TAD GDP 2.85714
100 3FVQ ATP 2.85714
101 2ZPT A3P 2.85714
102 1ZCB GDP 2.85714
103 3WY9 GDP 2.85714
104 1UJ2 ADP 2.85714
105 1UJ2 C5P 2.85714
106 3MGB PAP 2.85714
107 4KQW NAP 2.85714
108 1D8C GLV 2.85714
109 1H74 ADP 2.85714
110 3B8I OXL 2.85714
111 1P7T PYR 2.85714
112 4BUZ OAD 2.85714
113 4BUZ OCZ 2.85714
114 2JJK R15 2.85714
115 2JAQ DCP 2.92683
116 6BYF CIT 2.94118
117 3Q72 GNP 3.01205
118 2F9L GDP 3.01508
119 2QG6 NMN 3.01508
120 1W4R TTP 3.07692
121 5UIV ADP 3.0837
122 5G3Y ADP 3.09735
123 4WOP CTP 3.11111
124 1OIX GDP 3.14136
125 1OIV GDP 3.14136
126 5KUT GDP 3.1746
127 3AQ4 GDP 3.26087
128 6C90 ADP 3.26531
129 3COB ADP 3.26531
130 1NY5 ADP 3.26531
131 1IHU ADP 3.26531
132 1IHU AF3 3.26531
133 3A4M ADP 3.26531
134 1IN4 ADP 3.26531
135 1D2N ANP 3.26531
136 3CNL GNP 3.26531
137 3H4S ADP 3.26531
138 4FRZ ADP 3.26531
139 4NE2 ADP 3.26531
140 4NE2 SH2 3.26531
141 2ZR9 DTP 3.26531
142 6AU6 GDP 3.26531
143 5X40 ACP 3.26531
144 3FKQ ATP 3.26531
145 3QF7 ANP 3.26531
146 1R6B ADP 3.26531
147 1NST A3P 3.26531
148 1T5C ADP 3.26531
149 4PPF FLC 3.26531
150 1T8U A3P 3.26531
151 1T8U UAP SGN IDS SGN 3.26531
152 4GID 0GH 3.26531
153 2KCE D16 3.26531
154 5J1J ANP 3.26531
155 3BD9 A3P 3.26531
156 1ION ADP 3.29218
157 5O74 GDP 3.33333
158 4R2I ANP 3.33333
159 2RGX AP5 3.39806
160 3NKV GNP 3.42857
161 3CX8 GSP 3.44828
162 1RYH GNP 3.44828
163 1UKZ ADP 3.44828
164 3KTA AP5 3.46821
165 1XEX ATP 3.48837
166 4QM7 GTP 3.50877
167 5WDR GNP 3.50877
168 4YDS ATP 3.50877
169 5ZB0 ADP 3.53535
170 5ZB0 TYD 3.53535
171 3Q85 GNP 3.5503
172 1ZUI SKM 3.57143
173 1Z2A GDP 3.57143
174 1Z83 AP5 3.57143
175 3X1Z GNP 3.59281
176 3H86 AP5 3.64583
177 2WHX ADP 3.67347
178 4AG5 ADP 3.67347
179 5HCN GCP 3.67347
180 1FP6 ADP 3.67347
181 3SFV GDP 3.67347
182 4QOS ADP 3.67347
183 4D81 ADP 3.67347
184 1OS1 ATP 3.67347
185 1OS1 PYR 3.67347
186 5AK0 8V1 3.67347
187 1F9V ADP 3.67347
188 4RZ3 ADP 3.67347
189 1K6M AGS 3.67347
190 4LYA ATP 3.67347
191 6G14 G4P 3.67347
192 5EP2 AZU 3.67347
193 2JLR ANP 3.67347
194 2CE7 ADP 3.67347
195 1SQ5 ADP 3.67347
196 2BIF SIN 3.67347
197 2BIF ANP 3.67347
198 5YT0 GDP 3.67347
199 3LRE ADP 3.67347
200 5FG3 GDP 3.67347
201 5KSZ GCP 3.67347
202 1Z6T ADP 3.67347
203 2BEK ATP 3.67347
204 4R43 GDP 3.67347
205 1SZD APR 3.67347
206 2X77 GDP 3.7037
207 2ZEJ GDP 3.80435
208 1L2T ATP 3.82979
209 2ORV 4TA 3.84615
210 2EFE GNH 3.8674
211 1GWN GTP 3.90244
212 3W5J GDP 3.92157
213 3E5H GNP 3.93258
214 2W58 ADP 3.9604
215 2CHG ANP 3.9823
216 2ZTS ADP 3.98406
217 1CS4 GSP 4
218 3TNF GNP 4.02299
219 4LHW GNP 4.02299
220 2B8T THM 4.03587
221 1YRB GDP 4.08163
222 3DEF GDP 4.08163
223 5M7P ADP 4.08163
224 3IO3 ADP 4.08163
225 4K81 GTP 4.08163
226 4GOX A3P 4.08163
227 3HU3 AGS 4.08163
228 1LVK MNT BEF 4.08163
229 4ZKD GDP 4.08163
230 5E95 GDP 4.08163
231 1NVV GNP 4.08163
232 6FA4 GNP 4.08163
233 6D56 GNP 4.08163
234 6D5L GNP 4.08163
235 6D59 GNP 4.08163
236 6D5G GNP 4.08163
237 1SVK ALF GDP 4.08163
238 3ZFD ANP 4.08163
239 6BVI GNP 4.08163
240 6D55 GNP 4.08163
241 6D5J GNP 4.08163
242 6BVM GNP 4.08163
243 6D5M GNP 4.08163
244 6D5H GNP 4.08163
245 6D5E GNP 4.08163
246 6BVL GNP 4.08163
247 6BVJ GNP 4.08163
248 6BVK GNP 4.08163
249 6D5V GNP 4.08163
250 2QEN ADP 4.08163
251 2OM2 GDP 4.08163
252 4IDN GNP 4.08163
253 3DC4 ADP 4.08163
254 1G6H ADP 4.08163
255 1BH2 GSP 4.08163
256 5IFS ADP 4.08163
257 1P72 ADP 4.08163
258 1YTM ATP 4.08163
259 3QKT ANP 4.08163
260 2ZPA ADP 4.08163
261 4XGU ADP 4.08163
262 1Y3A GDP 4.08163
263 1SVM ATP 4.08163
264 1G7S GDP 4.08163
265 4ZDJ UTP 4.08163
266 1FNN ADP 4.08163
267 1AQU A3P 4.08163
268 2A2C NG1 4.08163
269 2A2C ADP 4.08163
270 2HIM ASP 4.08163
271 6DEF GCP 4.08163
272 1QF9 C5P 4.12371
273 1QF9 ALF 4.12371
274 1QF9 ADP 4.12371
275 3BOS CDP 4.13223
276 4V0K GDP 4.14201
277 4J0Q GDP 4.15704
278 3DOE GTP 4.16667
279 4DKX GDP 4.16667
280 1XX6 ADP 4.18848
281 2W83 GTP 4.24242
282 2WJG GDP 4.25532
283 1ZJ6 G3D 4.27807
284 2YOH WMJ 4.28571
285 1KSH GDP 4.30108
286 3N5C GDP 4.32099
287 3PCR GTP 4.32099
288 1M7B GTP 4.34783
289 4KAX GTP 4.34783
290 5OEC GDP 4.37158
291 1Z0F GDP 4.46927
292 1YZG GDP 4.46927
293 3GD8 GOL 4.4843
294 2Y65 ADP 4.4898
295 5WC2 ADP 4.4898
296 1VG9 GDP 4.4898
297 1VG0 GDP 4.4898
298 3VX3 ADP 4.4898
299 4HDO GNP 4.4898
300 4HDQ GNP 4.4898
301 1NHX FTB 4.4898
302 1NHX PEP 4.4898
303 1WQ1 GDP 4.4898
304 2GMV UN8 4.4898
305 3EWA ANP 4.4898
306 2Z5F A3P 4.4898
307 3FYH ADP 4.4898
308 5M04 GDP 4.4898
309 2GMV PEP 4.4898
310 2Q2Y MKR 4.4898
311 2ZE7 AMP 4.4898
312 2ZE7 DST 4.4898
313 2Q2Y ADP 4.4898
314 1QHG ATP 4.4898
315 1CR1 TTP 4.4898
316 4DCT GDP 4.4898
317 2GDJ ANP 4.4898
318 2R42 FPS 4.4898
319 4U00 ADP 4.5082
320 4BAS GNP 4.52261
321 5XC5 GTP 4.54545
322 1KO8 6PG 4.57143
323 4D0G GTP 4.57143
324 3PQC GDP 4.61538
325 1SVI GDP 4.61538
326 1NF3 GNP 4.61538
327 5BYK A3P 4.6332
328 5BYK OAQ 4.6332
329 2NGR GDP 4.71204
330 1A4R GNH 4.71204
331 1A4R GDP 4.71204
332 1GRN GDP 4.71204
333 1FQJ GDP 4.7619
334 1FQK GDP 4.7619
335 1FQJ ALF 4.7619
336 1FQK ALF 4.7619
337 2WJH GDP 4.81928
338 2WJH FLC 4.81928
339 4PJ3 ANP 4.89796
340 5TSH ADP 4.89796
341 3DZD ADP 4.89796
342 5EXT ADP 4.89796
343 5TSH ANP 4.89796
344 3FWY ADP 4.89796
345 4HSE ADP 4.89796
346 1W7J ADP BEF 4.89796
347 2WIC GNP 4.89796
348 2FNA ADP 4.89796
349 4KFU ACP 4.89796
350 4ZG4 VO4 ADP 4.89796
351 4OHY ANP 4.89796
352 1QF5 RPL 4.89796
353 1QF5 GDP 4.89796
354 3NHB ADP 4.89796
355 1DAR GDP 4.89796
356 3QVV A3P 4.89796
357 3QVV 3QV 4.89796
358 6B8B ADP 4.89796
359 2VVG ADP 4.89796
360 1NJF AGS 4.89796
361 1NJF ADP 4.89796
362 5GLN XYP XYP XYP 4.89796
363 3CV2 OXL 4.89796
364 1WUU ANP 4.89796
365 1D5C GDP 4.93827
366 4YC7 GNP 4.97238
367 2Y8E GNP 5.02793
368 1HTW ADP 5.06329
369 4DID GDP 5.26316
370 5OCG GNP 5.29101
371 5UQW GDP 5.29101
372 1YZQ GNP 5.29412
373 5XKT GNP 5.30612
374 5JCZ GDP 5.30612
375 1XKV ATP 5.30612
376 5BN3 ADP 5.30612
377 1F5N GNP 5.30612
378 1KK1 GNP 5.30612
379 4GBM A3P 5.30612
380 5HR5 ADP 5.30612
381 4IHQ ADP 5.30612
382 2GKS ADP 5.30612
383 2FAH GDP 5.30612
384 2WMO GTP 5.30612
385 5L3R GCP 5.30612
386 5MEX SZZ 5.30612
387 5MEX PAP 5.30612
388 4YJ1 ADP 5.30612
389 5TAR GDP 5.40541
390 5TB5 GDP 5.40541
391 2ZFI ADP 5.46448
392 2EW1 GNP 5.47264
393 2CDN ADP 5.47264
394 1LVG ADP 5.55556
395 2ODE ALF GDP 5.67376
396 1M7G AV2 5.6872
397 1M7G ADX 5.6872
398 1M7G ADP 5.6872
399 5VGR GDP 5.71429
400 5GOE GDP 5.71429
401 4KVG GTP 5.71429
402 2B8W ALF 5GP 5.71429
403 1WA5 GTP 5.71429
404 1M2O GNP 5.71429
405 3ZIA ADP 5.71429
406 1YQT ADP 5.71429
407 3ZIA ATP 5.71429
408 3BFX A3P 5.71429
409 5YV5 ADP 5.71429
410 5LLB 6YZ 5.71429
411 2F3R G5P 5.7971
412 1Z06 GNP 5.82011
413 4CVN ADP 5.83942
414 1G3Q ADP 5.90717
415 2GCN GDP 5.97015
416 2GCO GNP 5.97015
417 1CLU DBG 6.0241
418 2J59 GTP 6.0241
419 1J2J GTP 6.0241
420 1O3Y GTP 6.0241
421 2FH5 GTP 6.07477
422 1S9D GDP 6.09756
423 2XT3 ADP 6.12245
424 4LX0 BEF GDP 6.12245
425 4TL6 ANP 6.12245
426 4PFO ADP 6.12245
427 3U6B GDP 6.12245
428 4TMZ GSP 6.12245
429 5JBQ GDP 6.12245
430 4NCN GTP 6.12245
431 1D8T GDP 6.12245
432 4G5G GDP 6.12245
433 4P3Y GDP 6.12245
434 1B0U ATP 6.12245
435 1V8K ANP 6.12245
436 1SKQ GDP 6.12245
437 3U6K GDP 6.12245
438 1G4U GDP 6.12245
439 2HCJ GDP 6.12245
440 4PC3 GDP 6.12245
441 2BCG GDP 6.12245
442 2BVN GNP 6.12245
443 2G86 UMP 6.12245
444 4U5X GNP 6.17978
445 2A5F GTP 6.21762
446 1DAK ADP 6.25
447 1DAK DPU 6.25
448 5UWO GNP 6.29371
449 5UWH GNP 6.29371
450 5UWQ GNP 6.29371
451 5UWS GNP 6.29371
452 5UWP GNP 6.29371
453 5UWW GNP 6.29371
454 5UWR GNP 6.29371
455 6CIT GNP 6.29371
456 5UWT GNP 6.29371
457 5DIF GNP 6.29371
458 5UWI GNP 6.29371
459 5DHF GNP 6.29371
460 5DI9 GNP 6.29371
461 5UWJ GNP 6.29371
462 5U32 GDP 6.35593
463 4YLG GDP 6.35838
464 1B7T ADP 6.41026
465 4HAT GNP 6.42857
466 1S3G AP5 6.45161
467 1Z08 GNP 6.47059
468 5HPY GDP 6.48649
469 6BCA GSP 6.48649
470 1KK8 BEF ADP 6.49351
471 3UIE ANP 6.5
472 1KMQ GNP 6.52174
473 2OZE AGS 6.53061
474 2G77 GDP 6.53061
475 5N69 ADP 6.53061
476 3GJX GTP 6.53061
477 1D2E GDP 6.53061
478 1P9B GDP 6.53061
479 1G41 ADP 6.53061
480 2FJU GSP 6.53061
481 5H7K GDP 6.53061
482 4X8O AP5 6.54206
483 4TMK T5A 6.57277
484 4XOI GTP 6.66667
485 2VB6 ADP BEF 6.71141
486 2KIN ADP 6.72269
487 1X1R GDP 6.74157
488 1S8F GDP 6.77966
489 1TX4 ALF GDP 6.77966
490 2A5J GDP 6.80628
491 5SZH GNP 6.89655
492 1Z0A GDP 6.89655
493 3TBK ANP 6.93878
494 2FSH ANP 6.93878
495 3ZQ6 ADP ALF 6.93878
496 4H1V GNP 6.93878
497 1PUJ GNP 6.93878
498 2DPY ADP 6.93878
499 1W5T ANP 6.93878
500 3V2U ATP 6.93878
501 1Q19 SSC 6.93878
502 1W5T ADP 6.93878
503 3FB4 AP5 6.94444
504 1F6B GDP 7.07071
505 3LXR GDP 7.29167
506 4JLV ADP 7.34694
507 2O0J ADP 7.34694
508 2XTZ GSP 7.34694
509 5W76 GDP 7.34694
510 1BG2 ADP 7.34694
511 5YVT NAI 7.34694
512 3DDC GNP 7.36196
513 3KUD GDP 7.40741
514 1GUA GNP 7.40741
515 4GOJ GNP 7.40741
516 4LPS GDP 7.43802
517 1NN5 2DT 7.44186
518 1NN5 ANP 7.44186
519 3T12 GDP ALF 7.57576
520 3T1O GDP 7.57576
521 1TU3 GNP 7.59494
522 3CPJ GDP 7.62332
523 2UZI GTP 7.69231
524 1U8Z GDP 7.7381
525 5IRR GSP 7.7551
526 3ZS9 ADP ALF 7.7551
527 2WOJ ADP ALF 7.7551
528 5L3W GDP 7.7551
529 1IBR GNP 7.7551
530 1FZQ GDP 7.7551
531 4ZI2 GNP 7.7551
532 1X8J A3P 7.7551
533 5XDR ADP 7.7551
534 4WZ6 ATP 7.7551
535 2X7I CIT 7.7551
536 5JCP GDP ALF 7.7551
537 4MKF AP5 7.8341
538 1ZD9 GDP 7.97872
539 1HE1 GDP 8.14815
540 3BFV ADP 8.16327
541 4XVU ATP 8.16327
542 4XTR ATP 8.16327
543 4XTR ADP 8.16327
544 1G3M A3P 8.16327
545 1G3M PCQ 8.16327
546 3MD0 GDP 8.16327
547 2V2V V12 8.16327
548 1NRJ GTP 8.22785
549 5IRC GDP 8.45771
550 5O2T GSP 8.55615
551 4YS0 ADP 8.57143
552 1QHH ATP 8.57143
553 5IRN ADP 8.57143
554 2C78 GNP 8.57143
555 2C77 GNP 8.57143
556 1JJ7 ADP 8.57143
557 1RRC ADP 8.57143
558 1VKJ A3P 8.57143
559 5DI3 GNP 8.57143
560 3RWO GDP 8.64865
561 6BC0 GSP 8.66667
562 1F2U ATP 8.72483
563 4YMU ATP 8.75
564 5WLB GNP 8.82353
565 5FHD ADP ALF 8.97959
566 5FTB ANP 8.97959
567 1GP2 GDP 8.97959
568 6CRK GDP 8.97959
569 5KDO GDP 8.97959
570 1GOT GDP 8.97959
571 4OI4 ATP 8.97959
572 3GJ7 GDP 9.18367
573 1LFD GNP 9.1954
574 4E03 ADP 9.2233
575 4R98 GNH 9.22509
576 4M9Q GNP 9.2511
577 3TK1 GDP 9.38776
578 1OFH ADP 9.38776
579 4IOK ADP 9.38776
580 4IOK XPO 9.38776
581 1RE0 GDP 9.50226
582 2W2X GSP 9.67742
583 2D7D ADP 9.79592
584 4WZA ACP 9.79592
585 4WZA ADP 9.79592
586 4TTQ ATP 9.79592
587 1IWE IMP 9.79592
588 4ITR GDP 9.79592
589 1OW3 GDP 9.84456
590 3T5G GDP 9.94475
591 3QBT GNP 10
592 1UAD GNP 10.101
593 6BSX GDP 10.1124
594 6BSX E7S 10.1124
595 1ZIN AP5 10.1382
596 3TMK T5A 10.1852
597 1X6V ADP 10.2041
598 2QTV GNP 10.2041
599 1MKY GDP 10.2041
600 2IXE ATP 10.2041
601 1XMV ADP 10.2041
602 3Q9L ATP 10.2041
603 1XP8 AGS 10.2041
604 1ZRH A3P 10.2041
605 3RC3 ANP 10.2041
606 5BXQ GDP 10.2362
607 4D0N GDP 10.2703
608 2PZE ATP 10.4803
609 4XSH GSP 10.5023
610 1DS6 GDP 10.5556
611 1W0J ADP 10.6122
612 2CK3 ANP 10.6122
613 2V7Q ATP 10.6122
614 2CK3 ADP 10.6122
615 2V7Q ADP 10.6122
616 1R0X ATP 10.6122
617 4Q1A UDP 10.6122
618 4Q1A 2XZ 10.6122
619 5VHC BEF ADP 10.6122
620 1W0J ADP BEF 10.6122
621 5Z69 AGS 10.6122
622 1G7C 5GP 10.6383
623 2XTN GTP 10.6838
624 1I4D GDP 10.7143
625 4BQS K2Q 10.7955
626 4BQS ADP 10.7955
627 1GXU 2HP 10.989
628 4HI0 GDP 11.0204
629 5ZXD ATP 11.0204
630 2NCD ADP 11.0204
631 2ZW5 COA 11.0204
632 2OBM ADP 11.4286
633 3EC1 GDP 11.4286
634 4Z87 5GP 11.4286
635 1Z0K GTP 11.5942
636 1CXZ GSP 11.6279
637 5H68 AGS 11.8367
638 3BC1 GNP 11.8644
639 3WYF GTP 11.8721
640 3M1I GTP 11.8721
641 5G41 AP5 12.1076
642 5LEF GTP 12.1212
643 2HV8 GTP 12.5
644 3P4X ADP 12.6531
645 4UTG ANP 12.6531
646 5BQ5 ADP BEF 12.6984
647 1JI0 ATP 13.3333
648 5LB3 ADP 13.4694
649 5J1S ATP 13.8211
650 5L3S GNP 13.8776
651 5L3V GDP 13.8776
652 5WRJ A3P 13.8776
653 5WRI A3P 13.8776
654 1G6O ADP 14.2857
655 3RLF ANP 14.2857
656 2A9K GDP 14.7982
657 3CH5 GDP 15.3846
658 1RJ9 GCP 15.4605
659 5CK5 GDP 16.3265
660 3VMF GTP 16.3265
661 3WXM GTP 16.3265
662 2IYL GDP 16.5493
663 4C4P GNP 16.8224
664 2GJ8 ALF GDP 16.8605
665 4A4Z ANP 17.1429
666 5LTJ ADP 17.1429
667 2QQ0 TMP 17.3913
668 2QQ0 ADP 17.3913
669 2QQ0 THM 17.3913
670 2QQ0 ANP 17.3913
671 3WYG GTP 18.4211
672 4UXH T5A 18.4783
673 6BCB GSP 18.4932
674 5H7J GCP 18.7755
675 2D7C GTP 19.0476
676 1PVN MZP 20.4082
677 2C5L GTP 20.5128
678 6FAA ADP 21.2245
679 5W75 GDP 21.6327
680 6A20 ADP 21.6327
681 5ZBR ANP 21.6327
682 5Y6N ADP 22.0408
683 4IEE AGS 24.4898
684 1ZC3 GNP 26.5487
685 1YVD GNP 30.1775
686 1Z0J GTP 33.5294
687 5UWU GNP 35
688 5UPK GNP 35.4167
689 6B4K ANP 46.5306
690 6AIC AMP 50
Pocket No.: 2; Query (leader) PDB : 3DKP; Ligand: ADP; Similar sites found with APoc: 5
This union binding pocket(no: 2) in the query (biounit: 3dkp.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
1 2VTD LKM 2.44898
2 2BKA NDP 2.47934
3 3HDY FAD 3.67347
4 3HDY GDU 3.67347
5 5J60 FAD 4.08163
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