Receptor
PDB id Resolution Class Description Source Keywords
3EC1 2.36 Å EC: 3.-.-.- STRUCTURE OF YQEH GTPASE FROM GEOBACILLUS STEAROTHERMOPHILUS (AN ATNOS1 / ATNOA1 ORTHOLOG) GEOBACILLUS STEAROTHERMOPHILUS YQEH ATNOS1 ATNOA1 GTPASE TRAP PVHL HYDROLASE SIGNALING PROTEIN
Ref.: THE STRUCTURE OF YQEH. AN ATNOS1/ATNOA1 ORTHOLOG THAT COUPLES GTP HYDROLYSIS TO MOLECULAR RECOGNITION. J.BIOL.CHEM. V. 283 32968 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:900;
B:900;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3EC1 2.36 Å EC: 3.-.-.- STRUCTURE OF YQEH GTPASE FROM GEOBACILLUS STEAROTHERMOPHILUS (AN ATNOS1 / ATNOA1 ORTHOLOG) GEOBACILLUS STEAROTHERMOPHILUS YQEH ATNOS1 ATNOA1 GTPASE TRAP PVHL HYDROLASE SIGNALING PROTEIN
Ref.: THE STRUCTURE OF YQEH. AN ATNOS1/ATNOA1 ORTHOLOG THAT COUPLES GTP HYDROLYSIS TO MOLECULAR RECOGNITION. J.BIOL.CHEM. V. 283 32968 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 218 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 176 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 143 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3EC1; Ligand: GDP; Similar sites found: 484
This union binding pocket(no: 1) in the query (biounit: 3ec1.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1UPT GTP 0.00000001012 0.57647 None
2 1KK1 GNP 0.0000000006472 0.75461 1.08401
3 3DC4 ADP 0.00008426 0.51549 1.16279
4 1NST A3P 0.001153 0.41605 1.23077
5 5GOE GDP 0.000000004069 0.67097 1.35501
6 1K6M AGS 0.0003681 0.40565 1.35501
7 5I34 GDP 0.00002203 0.52123 1.62602
8 1P9B GDP 0.00002775 0.48425 1.62602
9 1V8K ANP 0.0003095 0.47456 1.62602
10 1XP8 AGS 0.0005329 0.46944 1.62602
11 3ZFD ANP 0.0002583 0.47504 1.7094
12 4X1Z FUC GAL NDG 0.02164 0.40314 1.80723
13 4XGU ADP 0.0004515 0.43667 1.89702
14 4IDN GNP 0.0004134 0.41343 1.89702
15 4HSE ADP 0.0006876 0.45281 2.16802
16 4IEE AGS 0.002135 0.44036 2.16802
17 5GJC ATP 0.002271 0.42225 2.16802
18 1OYY AGS 0.006704 0.41178 2.16802
19 2Q2Y ADP 0.001709 0.47093 2.17984
20 2Q2Y MKR 0.001849 0.46806 2.17984
21 4GOX A3P 0.0004043 0.40706 2.23642
22 2FNA ADP 0.0001268 0.42927 2.2409
23 1YRB GDP 0.0000000002955 0.69774 2.29008
24 4NON GDP 0.00000003735 0.50466 2.30769
25 2NCD ADP 0.00003709 0.53831 2.43902
26 2J5V PCA 0.02365 0.40969 2.45232
27 5WRI A3P 0.001015 0.45865 2.5
28 3LRE ADP 0.000003533 0.59591 2.53521
29 1SVK ALF GDP 0.00000004177 0.49038 2.54958
30 5GVR LMR 0.00001362 0.40708 2.5641
31 5WRJ A3P 0.001052 0.46165 2.64026
32 1JJ7 ADP 0.00002515 0.55596 2.69231
33 1G41 ADP 0.0002296 0.46506 2.71003
34 4FCW ADP 0.00127 0.4406 2.71003
35 2I4I AMP 0.0008001 0.42498 2.71003
36 4V03 ADP 0.0000669 0.50211 2.72374
37 1Y3A GDP 0.0000001006 0.53719 2.73556
38 2OM2 GDP 0.00000005698 0.56666 2.76923
39 1BG2 ADP 0.000004087 0.47532 2.76923
40 5EE5 GTP 0.000000001279 0.73904 2.8169
41 2XTZ GSP 0.00000001622 0.53671 2.82486
42 1BH2 GSP 0.0000001233 0.4871 2.85714
43 1T5C ADP 0.000009003 0.57437 2.86533
44 3FWY ADP 0.00001548 0.49258 2.86624
45 4ZKD GDP 0.000000002734 0.7357 2.98103
46 2C78 GNP 0.0000000007685 0.61181 2.98103
47 2C77 GNP 0.000000002385 0.61148 2.98103
48 5HR5 ADP 0.0003288 0.47525 2.98103
49 3RC3 ANP 0.0006775 0.46441 2.98103
50 2CE7 ADP 0.0006617 0.4562 2.98103
51 2VF7 ADP 0.001863 0.43298 2.98103
52 1NY5 ADP 0.001896 0.40978 2.98103
53 4PPF FLC 0.000002112 0.61079 3.14286
54 5CK5 GDP 0.000000002768 0.66909 3.16456
55 1F9V ADP 0.00001432 0.48504 3.17003
56 1OFH ADP 0.0009718 0.4384 3.22581
57 4LJ9 ACP 0.001593 0.44113 3.24484
58 4H1V GNP 0.000002225 0.52755 3.25203
59 4R43 GDP 0.00002472 0.52611 3.25203
60 3P4X ADP 0.00004546 0.4871 3.25203
61 3FKQ ATP 0.00009105 0.46164 3.25203
62 2XAU ADP 0.0007607 0.44143 3.25203
63 1Z6T ADP 0.0004974 0.43238 3.25203
64 4YS0 ADP 0.0005257 0.43092 3.25203
65 2ZJ5 ADP 0.007485 0.41998 3.25203
66 2YNC YNC 0.02226 0.41135 3.25203
67 2ZFI ADP 0.0001338 0.49166 3.27869
68 3BOS CDP 0.0006827 0.45842 3.30579
69 1M7G AV2 0.0000211 0.53705 3.31754
70 1M7G ADP 0.0001891 0.50472 3.31754
71 3T34 GDP 0.00002387 0.4514 3.33333
72 5L3V GDP 0.000001185 0.56386 3.34448
73 3E70 GDP 0.0000008936 0.58496 3.35366
74 5IFS ADP 0.00091 0.44982 3.37553
75 2VVG ADP 0.000004376 0.58958 3.42857
76 1KO8 6PG 0.0003493 0.47634 3.42857
77 2OBM ADP 0.0001375 0.51608 3.45821
78 4RD0 GDP 0.0000000007775 0.74931 3.52304
79 1AZT GSP 0.00000004119 0.4998 3.52304
80 4PFO ADP 0.001338 0.45836 3.52304
81 2FAH GDP 0.0003079 0.45225 3.52304
82 1YTM ATP 0.0008051 0.41532 3.52304
83 2Y65 ADP 0.000008532 0.4805 3.56164
84 1IN4 ADP 0.0003052 0.43242 3.59281
85 3NHB ADP 0.00005987 0.52848 3.59477
86 2RCN GDP 0.00000000107 0.73101 3.63128
87 1ION ADP 0.0002049 0.46697 3.7037
88 1SKQ GDP 0.000000001277 0.74037 3.79404
89 3COB ADP 0.000006284 0.58167 3.79404
90 1WDT GTP 0.000002098 0.5154 3.79404
91 5K5Z ANP 0.0007337 0.46916 3.82166
92 3CX8 GSP 0.00000003229 0.50205 3.84615
93 3Q9L ATP 0.0002786 0.44153 3.84615
94 1B7T ADP 0.001169 0.43344 3.84615
95 1VG8 GNP 0.000000001476 0.55497 3.86473
96 5L3W GDP 0.0000002125 0.6173 3.92157
97 4LYA ATP 0.00006904 0.49852 3.9356
98 5L3S GNP 0.000003085 0.58324 4.05405
99 2DPY ADP 0.00001101 0.55927 4.06504
100 5JCP GDP ALF 0.0000005401 0.55296 4.06504
101 4FRZ ADP 0.00002992 0.54322 4.06504
102 4IHQ ADP 0.0002058 0.48936 4.06504
103 5TSH ADP 0.00001325 0.48344 4.06504
104 5TSH ANP 0.0001219 0.47883 4.06504
105 3H4S ADP 0.00001074 0.4751 4.06504
106 3TBK ANP 0.0009446 0.46348 4.06504
107 5M7P ADP 0.001516 0.44637 4.06504
108 2GK6 ADP 0.002478 0.44271 4.06504
109 1YVD GNP 0.000000003688 0.55576 4.14201
110 2V5K OXM 0.01779 0.40786 4.18118
111 1G3Q ADP 0.0000743 0.49706 4.21941
112 1GOJ ADP 0.000004897 0.58691 4.22535
113 4D81 ADP 0.0003861 0.46956 4.24028
114 1KK8 BEF ADP 0.000573 0.42872 4.31655
115 1VG1 GDP 0.0000000002482 0.74779 4.32432
116 1VG0 GDP 0.0000000003906 0.74787 4.33604
117 1VG9 GDP 0.0000000003415 0.74145 4.33604
118 5MZN ADP 0.003315 0.43645 4.33604
119 2C9O ADP 0.0008639 0.40899 4.33604
120 3B7G ANP 0.0008164 0.4494 4.34783
121 5MEX SZZ 0.02693 0.40816 4.34783
122 5MEX PAP 0.01111 0.4056 4.34783
123 2XT3 ADP 0.000004682 0.58916 4.36047
124 2C04 GCP 0.000004262 0.51825 4.3771
125 2ZR9 DTP 0.0001378 0.49107 4.58453
126 4J0Q GDP 0.00000000004999 0.80822 4.60705
127 5XDR ADP 0.0003856 0.46432 4.60705
128 4R3L COA 0.03047 0.40734 4.62428
129 5VGR GDP 0.0001948 0.4476 4.64037
130 2PL3 ADP 0.0006529 0.46518 4.66102
131 4P4T GDP 0.000001796 0.51912 4.72222
132 1XPJ TLA 0.002567 0.46411 4.7619
133 4PX9 ADP 0.0001756 0.46223 4.79452
134 5X40 ACP 0.002672 0.44046 4.79452
135 1CJW COT 0.01516 0.41154 4.81928
136 4WZ6 ATP 0.0004099 0.48527 4.82759
137 1JJV ATP 0.0001693 0.50402 4.85437
138 4U00 ADP 0.000004945 0.46668 4.91803
139 3N5C GDP 0.000000000489 0.74698 4.93827
140 3PCR GTP 0.000000002853 0.58391 4.93827
141 3ZQ6 ADP ALF 0.00009585 0.4108 4.93827
142 1RRC ADP 0.00003572 0.45384 4.98339
143 3IIJ ADP 0.00002846 0.52323 5
144 2F9L GDP 0.00000001389 0.56095 5.02513
145 2OZE AGS 0.001048 0.41183 5.03356
146 2ZPA ADP 0.0005002 0.46901 5.06706
147 1CR1 TTP 0.0003652 0.47764 5.06757
148 4TTQ ATP 0.00005056 0.51151 5.11628
149 3KJI ADP 0.000002337 0.57253 5.11811
150 1FNN ADP 0.001083 0.41172 5.14139
151 1TQ4 GDP 0.00000001561 0.58216 5.14905
152 5KSZ GCP 0.000002326 0.55302 5.14905
153 4A4Z ANP 0.001581 0.4413 5.14905
154 2D7D ADP 0.00189 0.43765 5.14905
155 2JLR ANP 0.004534 0.40063 5.14905
156 2ZTS ADP 0.001135 0.40825 5.17928
157 1CS4 GSP 0.0000000598 0.50481 5.18868
158 5KSP GDP 0.000001368 0.5765 5.26316
159 4QOS ADP 0.001135 0.43408 5.28302
160 2WHX ADP 0.0008912 0.4685 5.42005
161 5N69 ADP 0.001383 0.42211 5.42005
162 2O0J ADP 0.00101 0.42148 5.42005
163 1VHT BA3 0.001322 0.43253 5.50459
164 5IRR GSP 0.00001374 0.46717 5.51948
165 4DKX GDP 0.0000000003513 0.75373 5.55556
166 1D5C GDP 0.000000001913 0.64696 5.55556
167 4JLV ADP 0.000475 0.44534 5.57621
168 1X1R GDP 0.000000007939 0.53184 5.61798
169 4RZ3 ADP 0.00001959 0.53247 5.76271
170 2OFW ADX 0.001076 0.47992 5.76923
171 1Z06 GNP 0.0000000003127 0.59763 5.82011
172 5BQ5 ADP BEF 0.0003325 0.45734 5.82011
173 5WDR GNP 0.00000002278 0.69109 5.84795
174 1GWN GTP 0.0000005702 0.61031 5.85366
175 2KIN ADP 0.000002315 0.48237 5.88235
176 1QF5 RPL 0.01637 0.45534 5.96206
177 4MKF AP5 0.006184 0.44366 5.99078
178 1ZCB GDP 0.00000007221 0.52173 6.07735
179 3AB3 GDP 0.00000001725 0.68212 6.09756
180 2PZE ATP 0.00008815 0.52255 6.11354
181 2Y8E GNP 0.000000007794 0.54714 6.14525
182 2A5F GTP 0.000000009005 0.5572 6.21762
183 1OXV ANP 0.0002668 0.48392 6.23229
184 4LHW GNP 0.000000004393 0.5516 6.32184
185 5UWP GNP 0.00000001419 0.7037 6.32911
186 5UWR GNP 0.00000001265 0.70347 6.32911
187 5UWU GNP 0.00000001398 0.70137 6.32911
188 5UWI GNP 0.00000001417 0.70108 6.32911
189 5UWT GNP 0.0000000147 0.70031 6.32911
190 5DI9 GNP 0.00000001907 0.69745 6.32911
191 2CBZ ATP 0.00002431 0.55887 6.32911
192 5UWQ GNP 0.00000001047 0.53002 6.32911
193 5UWO GNP 0.000000011 0.52954 6.32911
194 5UWW GNP 0.00000001271 0.52759 6.32911
195 5DHF GNP 0.00000001361 0.52711 6.32911
196 5DIF GNP 0.00000001373 0.52683 6.32911
197 5UWJ GNP 0.00000001461 0.52645 6.32911
198 5UWS GNP 0.00000001492 0.51667 6.32911
199 1G7C 5GP 0.000000004362 0.70235 6.38298
200 3QBT GNP 0.000000002293 0.56026 6.42857
201 2BME GNP 0.000000008175 0.54364 6.45161
202 1YZQ GNP 0.000000004638 0.54246 6.47059
203 1M7B GTP 0.0000002612 0.54226 6.52174
204 1Y63 ADP 0.00003059 0.52176 6.52174
205 1BO4 COA 0.001356 0.44442 6.54762
206 3B5J 12D 0.0006463 0.47165 6.58436
207 3X1Z GNP 0.00000002114 0.69528 6.58683
208 4HDO GNP 0.0000000114 0.52864 6.58683
209 4HDQ GNP 0.00000001819 0.52343 6.58683
210 2OG2 MLI 0.000004334 0.5927 6.68524
211 1YZG GDP 0.0000000007593 0.72555 6.70391
212 2PEZ GGZ 0.0005498 0.48665 6.70391
213 2PEZ DAT 0.0005498 0.48665 6.70391
214 3CPJ GDP 0.0000000009388 0.67671 6.72646
215 3E5H GNP 0.000000009759 0.54254 6.74157
216 1DS6 GDP 0.00000001365 0.67908 6.77083
217 1G7S GDP 0.0000000002894 0.74473 6.77507
218 4OHY ANP 0.0001468 0.41359 6.77507
219 3GJ7 GDP 0.00000000006729 0.78743 6.78733
220 3GJ8 GDP 0.0000000001262 0.76124 6.78733
221 3GJ5 GDP 0.0000000001333 0.76014 6.78733
222 5MVR ADP 0.0002781 0.46352 6.79012
223 2IL4 COA 0.002741 0.40724 6.79612
224 4CVN ADP 0.00002613 0.54068 6.80628
225 4KAX GTP 0.000000002805 0.59579 6.8323
226 5UAV TFB 0.02325 0.41141 6.8323
227 5UAV NDP 0.02325 0.41141 6.8323
228 3M1I GTP 0.00000001642 0.69798 6.84932
229 3WYF GTP 0.00000002261 0.51288 6.84932
230 4GOJ GNP 0.00000000009067 0.79366 6.87831
231 2W58 ADP 0.00002136 0.56078 6.93069
232 4HAT GNP 0.00000001211 0.5181 6.94444
233 2FFQ GSP 0.000000008837 0.71102 7.01754
234 4YDS ATP 0.0006066 0.47302 7.01754
235 4DCT GDP 0.0000000002484 0.74777 7.04607
236 5FTB ANP 0.002026 0.42199 7.04607
237 3Q85 GNP 0.00000000001198 0.82262 7.10059
238 1FQJ GDP 0.00000003147 0.54918 7.14286
239 3BD9 A3P 0.005019 0.41324 7.14286
240 1FZQ GDP 0.000000000006079 0.83646 7.18232
241 2QTV GNP 0.00000008501 0.52891 7.18563
242 3LN9 FLC 0.006624 0.42231 7.19424
243 1I0B PEL 0.006255 0.41527 7.22892
244 4ZG4 VO4 ADP 0.0006985 0.46831 7.31707
245 5LB3 ADP 0.0008032 0.46084 7.31707
246 1W0J ADP 0.00004365 0.51351 7.35294
247 1W0J ADP BEF 0.001938 0.44135 7.35294
248 2EFE GNH 0.000000003786 0.65352 7.49064
249 4Q1A 2XZ 0.01102 0.47558 7.5
250 4Q1A UDP 0.01102 0.47558 7.5
251 2ZE7 AMP 0.005572 0.42844 7.50988
252 2ZE7 DST 0.005992 0.42844 7.50988
253 2CHG ANP 0.0008591 0.42581 7.52212
254 4HI0 GDP 0.000002204 0.50899 7.53769
255 1LVG ADP 0.000007147 0.56857 7.57576
256 1XMV ADP 0.0005874 0.45594 7.58427
257 3VMF GTP 0.000000002035 0.73898 7.58808
258 2IYL GDP 0.0000001656 0.62819 7.58808
259 3A4M ADP 0.00001738 0.54946 7.69231
260 5H56 ADP 0.0003884 0.49106 7.69231
261 5H56 TYD 0.0003884 0.49106 7.69231
262 3KTA AP5 0.001933 0.41512 7.69231
263 3BFV ADP 0.00002923 0.52269 7.74908
264 2FSH ANP 0.002731 0.41269 7.85908
265 3DZD ADP 0.00357 0.40536 7.88043
266 1S8F GDP 0.00000000595 0.5272 7.9096
267 5UQW GDP 0.000000002153 0.73475 7.93651
268 4DSU GDP 0.000000004399 0.54147 7.93651
269 3B9Q MLI 0.00001572 0.56143 7.94702
270 4BQS ADP 0.0001711 0.48665 7.95455
271 4BQS K2Q 0.00119 0.47406 7.95455
272 2J0V GDP 0.0000000387 0.64739 8.01887
273 5M04 GDP 0.000000000005402 0.78075 8.05556
274 5TB5 GDP 0.0000000007111 0.73145 8.10811
275 5TAR GDP 0.0000000006809 0.68342 8.10811
276 3RWO GDP 0.000000007559 0.54591 8.10811
277 1DAR GDP 0.000000001856 0.71978 8.13008
278 1G6H ADP 0.00003436 0.54756 8.17121
279 5L3R GCP 0.000003469 0.47246 8.19113
280 3WYG GTP 0.00000005266 0.50332 8.24176
281 4ITR GDP 0.0000004608 0.54271 8.37696
282 5FG3 GDP 0.00000000005769 0.73811 8.40108
283 2GCO GNP 0.0000002706 0.56413 8.40108
284 2GCN GDP 0.0000004245 0.52244 8.40108
285 5LTJ ADP 0.001113 0.44322 8.40108
286 3EWA ANP 0.001397 0.4318 8.40108
287 2WMO GTP 0.0000002426 0.59463 8.42105
288 3Q72 GNP 0.000000001796 0.73324 8.43373
289 1XTQ GDP 0.000000005983 0.57214 8.47458
290 3UIE ANP 0.0001663 0.47077 8.5
291 1WA5 GTP 0.00000002692 0.48562 8.52273
292 3WXM GTP 0.000000005062 0.71989 8.67209
293 1Z0K GTP 0.000000003077 0.57962 8.69565
294 1SQ5 ADP 0.000143 0.48404 8.76623
295 5XCO GDP 0.000000001439 0.72158 8.77193
296 4K81 GTP 0.000000006731 0.52351 8.77193
297 3IUY AMP 0.0005118 0.4643 8.77193
298 1B0U ATP 0.0004171 0.4414 8.77863
299 1KY3 GDP 0.000000001342 0.67015 8.79121
300 1GXU 2HP 0.00001306 0.56978 8.79121
301 5HCN GCP 0.0000000007844 0.72491 8.81226
302 5O2T GSP 0.000000008854 0.53291 8.87574
303 5IRN ADP 0.0002748 0.47641 8.94309
304 4U5X GNP 0.0000002424 0.55244 8.98876
305 5UFQ GNP 0.000000006133 0.71587 9.03614
306 2UZI GTP 0.000000008944 0.70797 9.03614
307 1CLU DBG 0.00000005937 0.69989 9.03614
308 3KUD GDP 0.00000000849 0.59045 9.03614
309 3DDC GNP 0.000000008167 0.53316 9.03614
310 2WKQ GTP 0.0000003275 0.51621 9.03614
311 4XVU ATP 0.0001205 0.50477 9.03955
312 2WOJ ADP ALF 0.0001166 0.41155 9.03955
313 3ZS9 ADP ALF 0.0001424 0.40944 9.03955
314 3IO3 ADP 0.000104 0.45386 9.1954
315 3WY9 GDP 0.00000000005554 0.80601 9.21409
316 3WYA GDP 0.0000000002206 0.76321 9.21409
317 3GJX GTP 0.00000002742 0.68719 9.21409
318 1XKV ATP 0.00004567 0.49405 9.21409
319 4WOP CTP 0.0007859 0.4619 9.33333
320 4TMK T5A 0.03125 0.40071 9.38967
321 5HGZ ACO 0.01688 0.4051 9.46502
322 1M2O GNP 0.000000162 0.51186 9.47368
323 3EZ2 ADP 0.0005372 0.46927 9.4851
324 2IS6 ADP 0.0008272 0.45451 9.4851
325 4IOK XPO 0.0004826 0.40134 9.4851
326 4YSX FAD 0.02697 0.4119 9.61539
327 1R0X ATP 0.002009 0.41775 9.79021
328 5SZH GNP 0.000000001311 0.75117 9.85222
329 3DOE GTP 0.000000000431 0.60704 9.89583
330 1W7J ADP BEF 0.0005853 0.42806 9.93377
331 3T1O GDP 0.00000002296 0.66187 10.101
332 3T12 GDP ALF 0.00000002474 0.56304 10.101
333 5L7G 6QE 0.01476 0.40487 10.1639
334 1NJF ADP 0.00008931 0.50418 10.4
335 1NJF AGS 0.0001533 0.49767 10.4
336 4DID GDP 0.0000001405 0.62175 10.5263
337 4YC7 GNP 0.0000002847 0.62747 10.5691
338 4ZNL BEF ADP 0.0005479 0.45733 10.5839
339 5KDO GDP 0.0000001316 0.55473 10.5882
340 1EK0 GNP 0.00000001601 0.53424 10.5882
341 2X7I CIT 0.004462 0.4201 10.7143
342 1H65 GDP 0.000004901 0.48063 10.7407
343 4B47 GDP 0.00000000001982 0.82759 10.7438
344 5G41 AP5 0.006037 0.44804 10.7623
345 4XTR ATP 0.00009723 0.50923 10.8108
346 4XTR ADP 0.00008295 0.50569 10.8108
347 1JI0 ATP 0.0002091 0.49594 10.8333
348 5KUT GDP 0.00000006392 0.63741 11.1111
349 5I0H ADP BEF 0.0007902 0.46179 11.1111
350 1G16 GDP 0.00000001078 0.57153 11.1765
351 2FH5 GTP 0.000000002484 0.60914 11.215
352 3A1S GDP 0.00000001909 0.66144 11.2403
353 3BER AMP 0.0004358 0.46758 11.245
354 1ZJ6 G3D 0.0000000007513 0.72577 11.3821
355 1ZD9 GDP 0.00000002812 0.58942 11.3821
356 1IHU AF3 0.00002163 0.45858 11.3821
357 1IHU ADP 0.00002419 0.4488 11.3821
358 2VB6 ADP BEF 0.001078 0.45931 11.4094
359 3NKV GNP 0.000000003606 0.55455 11.4286
360 3DKP ADP 0.0008121 0.45488 11.4286
361 3TNF GNP 0.000000003015 0.53494 11.6531
362 4YMU ATP 0.000324 0.47986 11.6667
363 1Z0F GDP 0.0000000003348 0.74184 11.7318
364 1FP6 ADP 0.0000459 0.48323 11.7647
365 1KSH GDP 0.0000000001829 0.77546 11.8421
366 3T5G GDP 0.000000001425 0.71753 11.8421
367 5J1J ANP 0.00009401 0.43005 11.9298
368 3GJ4 GDP 0.0000000000817 0.78347 12.1212
369 1R4A GNP 0.00000000117 0.58187 12.1212
370 4YLG GDP 0.0000000009621 0.73378 12.1387
371 5JCZ GDP 0.00000001431 0.59603 12.2905
372 2A9K GDP 0.000000009088 0.68822 12.2995
373 4WZA ADP 0.0003162 0.52615 12.3188
374 4WZA ACP 0.0003253 0.5255 12.3188
375 4V0K GDP 0.000000004829 0.56337 12.426
376 4LX0 BEF GDP 0.000000007639 0.71408 12.4294
377 4R98 GNH 0.00000001543 0.65165 12.5461
378 1OIV GDP 0.000000002629 0.73362 12.5654
379 1OIX GDP 0.000000006634 0.71423 12.5654
380 4D0G GTP 0.000000002053 0.72926 12.5714
381 1KAO GDP 0.000000004643 0.63096 12.5749
382 1F6B GDP 0.000000002596 0.70111 12.6263
383 2C5L GTP 0.000000008373 0.53209 12.8205
384 2HF9 GSP 0.000001481 0.53697 12.8319
385 2EW1 GNP 0.000000002795 0.72618 12.9353
386 5E5U MLI 0.009814 0.43705 13.0653
387 5K2M ADP 0.01547 0.40545 13.2075
388 5DI3 GNP 0.0000000004301 0.62309 13.308
389 3PQC GDP 0.00000001441 0.64658 13.3333
390 1YZN GNP 0.000000005137 0.53971 13.5135
391 2ZEJ GDP 0.000000008819 0.53362 13.587
392 2BCG GDP 0.000000001663 0.63223 13.5922
393 1U8Z GDP 0.00000001059 0.564 13.6905
394 4R2I ANP 0.0000971 0.51244 13.8095
395 4C4P GNP 0.000000004299 0.72618 13.8728
396 2QN6 GDP 0.00000000006614 0.80236 13.9785
397 2V7Q ATP 0.00003326 0.50127 14
398 2V7Q ADP 0.001448 0.44308 14
399 2CK3 ANP 0.001894 0.40558 14
400 3QF7 ANP 0.002051 0.40173 14
401 4LPS GDP 0.0000009111 0.58458 14.0496
402 2CJW GDP 0.0000000001363 0.77304 14.0625
403 1XX6 ADP 0.002983 0.42833 14.1361
404 3DEF GDP 0.000002724 0.53398 14.5038
405 1PUJ GNP 0.000000002621 0.65963 14.539
406 2A5J GDP 0.00000000068 0.70453 14.6597
407 1NRJ GTP 0.0000002048 0.54891 14.6789
408 3TKL GTP 0.000000002864 0.56965 14.7959
409 1Z2A GDP 0.00000003224 0.54934 14.881
410 4QM7 GTP 0.0001993 0.48353 15.2047
411 3CH5 GDP 0.0000000001285 0.76088 15.3846
412 4M9Q GNP 0.0000000002318 0.63103 15.4185
413 3TK1 GDP 0.000000000001424 0.90052 15.4545
414 3U6B GDP 0.00000000001511 0.83327 15.4822
415 4G5G GDP 0.00000000006305 0.78875 15.4822
416 3U6K GDP 0.0000000002183 0.76343 15.4822
417 4P3Y GDP 0.00000000001666 0.76002 15.4822
418 5JBQ GDP 0.00000000005202 0.75919 15.4822
419 4PC3 GDP 0.000000001495 0.67109 15.4822
420 2HT6 GDP 0.00000000003912 0.81335 15.5172
421 1Z0A GDP 0.000000000857 0.70013 15.5172
422 1D8T GDP 0.00000000003727 0.79948 15.5216
423 2BVN GNP 0.000000000223 0.70234 15.5216
424 4BAS GNP 0.00000004665 0.6648 15.9892
425 2AWN ADP 0.0000007565 0.64563 15.9892
426 3SFV GDP 0.000000001417 0.73343 16.0221
427 3W5J GDP 0.000001075 0.61864 16.1765
428 1HTW ADP 0.0003308 0.46736 16.4557
429 2WIC GNP 0.00000002263 0.65806 16.4794
430 4E03 ADP 0.000103 0.49057 16.5049
431 1RYH GNP 0.00000004127 0.62756 16.7488
432 4D0N GDP 0.00000003052 0.63853 16.7568
433 3LXR GDP 0.00000008275 0.61505 16.7568
434 5HPY GDP 0.0000004591 0.60864 16.7568
435 2W83 GTP 0.000000005303 0.57465 16.8831
436 1D2E GDP 0.0000000008742 0.67909 17.0732
437 4XSH GSP 0.0000003819 0.54606 17.3184
438 4QRH 0O2 0.01217 0.40554 17.619
439 3SBD GNP 0.0000004557 0.4925 17.6471
440 1I4D GDP 0.000000006371 0.70673 17.7083
441 1E96 GTP 0.0000003821 0.4953 17.7083
442 4XOI GTP 0.000001315 0.60102 17.7778
443 3BC1 GNP 0.0000000017 0.56608 17.9487
444 2X77 GDP 0.00000000106 0.71893 17.9894
445 2HCJ GDP 0.00000000001686 0.75948 18.209
446 1MH1 GNP 0.0000001991 0.64548 18.2796
447 3CNL GNP 0.000000005534 0.70968 18.3206
448 1G4U GDP 0.0000002773 0.54968 18.4783
449 4ZI2 GNP 0.0000000000631 0.64812 18.797
450 1MKY GDP 0.00000000004601 0.79518 18.9702
451 4GDX GLU 0.007636 0.42594 18.9744
452 2FJU GSP 0.0000001366 0.55012 19.1011
453 1TU3 GNP 0.000000001759 0.56522 19.2982
454 1HE1 GDP 0.0000001855 0.54499 19.3182
455 1R2Q GNP 0.00000000995 0.47785 19.4118
456 1U0J ADP 0.0004365 0.47361 19.4757
457 2ODE ALF GDP 0.00000003683 0.68602 19.8582
458 4NCN GTP 0.00000001163 0.56224 20.5962
459 3ZIA ATP 0.000118 0.48786 21.3115
460 3ZIA ADP 0.00008996 0.47327 21.3115
461 1GUA GNP 0.00000001801 0.52451 21.5569
462 5E95 GDP 0.000000001268 0.65367 21.6495
463 2WJG GDP 0.000000001671 0.72192 21.8085
464 1RE0 GDP 0.0000000001197 0.78994 21.9512
465 1S9D GDP 0.0000000007992 0.72454 21.9512
466 4KVG GTP 0.000000007285 0.54507 22.0238
467 4TMZ GSP 0.000000008496 0.5654 22.029
468 1O3Y GTP 0.000000003852 0.57994 22.2892
469 2J59 GTP 0.000000004686 0.5767 22.2892
470 1J2J GTP 0.00000001376 0.56183 22.2892
471 1ZC3 GNP 0.00000001021 0.53019 22.8571
472 1Z0J GTP 0.000000009873 0.53423 23.7288
473 1MR3 G3D 0.0000000002477 0.74783 23.7569
474 3AQ4 GDP 0.0000000005996 0.73025 23.913
475 3GJ3 GDP 0.00000000003953 0.79828 24.2424
476 2QZ4 ADP 0.0004648 0.45124 24.4275
477 2WJH GDP 0.00000000222 0.70422 24.6988
478 2WJH FLC 0.00000535 0.5527 24.6988
479 5H67 ATP 0.009663 0.40017 25
480 1UAD GNP 0.00000002028 0.53232 25.2525
481 1Z08 GNP 0.00000001424 0.55975 26.4706
482 2W2X GSP 0.0000001533 0.54806 27.4194
483 5UWH GNP 0.00000001522 0.52585 36.3636
484 3MJH GTP 0.000000004304 0.5545 38.2353
Pocket No.: 2; Query (leader) PDB : 3EC1; Ligand: GDP; Similar sites found: 22
This union binding pocket(no: 2) in the query (biounit: 3ec1.bio2) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2B4D COA 0.007768 0.42353 1.75439
2 4B5P ACO 0.01193 0.42358 2
3 3KC1 2T6 0.01666 0.40521 2.07715
4 5GK9 ACO 0.02208 0.40981 2.17391
5 1J78 OLA 0.01441 0.40128 2.43902
6 1GHE ACO 0.007208 0.43027 2.82486
7 5H86 BCO 0.01291 0.42317 2.97619
8 5HR5 FLC 0.02001 0.41701 2.98103
9 5CUQ NSC 0.04175 0.4013 2.99625
10 4ITM ATP 0.02101 0.40815 3.49206
11 3H86 AP5 0.04689 0.43946 3.64583
12 3CV2 OXL 0.002448 0.44338 3.79404
13 3F8D FAD 0.03158 0.43343 4.64396
14 5LOG SAH 0.02213 0.40078 4.72103
15 2ZPA ACO 0.007434 0.42796 5.06706
16 2VOH CIT 0.02093 0.40554 5.09554
17 1CM0 COA 0.002561 0.40257 6.54762
18 3R96 ACO 0.01461 0.42972 7.44681
19 1P72 ADP 0.044 0.42357 7.78443
20 1VKJ A3P 0.01368 0.41126 9.47368
21 5BUK FAD 0.03497 0.41656 12.7371
22 2W9S NDP 0.02997 0.40294 15.528
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