Receptor
PDB id Resolution Class Description Source Keywords
3G5K 1.7 Å EC: 3.5.1.88 STRUCTURE AND ACTIVITY OF HUMAN MITOCHONDRIAL PEPTIDE DEFORM NOVEL CANCER TARGET HOMO SAPIENS PEPTIDE DEFORMYLASE ACTINONIN HYDROLASE IRON METAL-BINDIMITOCHONDRION PROTEIN BIOSYNTHESIS TRANSIT PEPTIDE
Ref.: STRUCTURE AND ACTIVITY OF HUMAN MITOCHONDRIAL PEPTI DEFORMYLASE, A NOVEL CANCER TARGET J.MOL.BIOL. V. 387 1211 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BB2 A:1001;
B:1002;
C:1003;
D:1004;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
385.498 C19 H35 N3 O5 CCCCC...
CO A:1002;
B:1003;
C:1;
D:2;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
58.933 Co [Co+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3G5K 1.7 Å EC: 3.5.1.88 STRUCTURE AND ACTIVITY OF HUMAN MITOCHONDRIAL PEPTIDE DEFORM NOVEL CANCER TARGET HOMO SAPIENS PEPTIDE DEFORMYLASE ACTINONIN HYDROLASE IRON METAL-BINDIMITOCHONDRION PROTEIN BIOSYNTHESIS TRANSIT PEPTIDE
Ref.: STRUCTURE AND ACTIVITY OF HUMAN MITOCHONDRIAL PEPTI DEFORMYLASE, A NOVEL CANCER TARGET J.MOL.BIOL. V. 387 1211 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 3G5K - BB2 C19 H35 N3 O5 CCCCC[C@H]....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 3G5K - BB2 C19 H35 N3 O5 CCCCC[C@H]....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 3G5K - BB2 C19 H35 N3 O5 CCCCC[C@H]....
2 4JE8 Kd = 6100 nM MET ALA SER n/a n/a
3 4JE7 Kd = 395 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BB2; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 BB2 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: 3
This union binding pocket(no: 1) in the query (biounit: 3g5k.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5MTE BB2 44.5255
2 1G27 BB1 47.619
3 3UWB BB2 49.3507
Pocket No.: 2; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3g5k.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3g5k.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3g5k.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3g5k.bio3) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3g5k.bio3) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3g5k.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3G5K; Ligand: BB2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3g5k.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
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