Receptor
PDB id Resolution Class Description Source Keywords
3GJ0 1.48 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF HUMAN RANGDP HOMO SAPIENS G PROTEIN GDP ACETYLATION CYTOPLASM GTP-BINDING HOST- VIRUS INTERACTION NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTTRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
B:217;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
B:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ0 1.48 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF HUMAN RANGDP HOMO SAPIENS G PROTEIN GDP ACETYLATION CYTOPLASM GTP-BINDING HOST- VIRUS INTERACTION NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTTRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 218 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 176 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 143 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ0; Ligand: GDP; Similar sites found: 519
This union binding pocket(no: 1) in the query (biounit: 3gj0.bio2) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1S7N COA 0.007453 0.41991 1.0989
2 2V2V V12 0.04136 0.40566 1.35747
3 4NU0 AP5 0.0002774 0.51426 1.38249
4 4ZNL BEF ADP 0.0001169 0.49442 1.80995
5 3DKP ADP 0.0001158 0.49157 1.80995
6 3IUY AMP 0.001869 0.43525 1.80995
7 3BFX A3P 0.004194 0.43011 1.80995
8 2X7I CIT 0.006283 0.41066 1.80995
9 3L9W AMP 0.02503 0.40805 1.80995
10 1BG2 ADP 0.0000002021 0.52957 2.26244
11 4R43 GDP 0.00006834 0.50223 2.26244
12 3DZD ADP 0.0001155 0.50026 2.26244
13 4YS0 ADP 0.0006236 0.46777 2.26244
14 2FNA ADP 0.00001503 0.44893 2.26244
15 5WRI A3P 0.00309 0.44035 2.26244
16 5TIV A3P 0.01042 0.4381 2.26244
17 3RC3 ANP 0.002619 0.4211 2.26244
18 1H74 ADP 0.01616 0.41893 2.26244
19 2PI8 NAG NAG NAG NAG NAG NAG 0.03754 0.40011 2.26244
20 3TK1 GDP 0.000000000009223 0.77446 2.71493
21 1GOJ ADP 0.0000000769 0.68853 2.71493
22 5KSZ GCP 0.000001192 0.59147 2.71493
23 3ZQ6 ADP ALF 0.000008919 0.57316 2.71493
24 2C9O ADP 0.00002033 0.5442 2.71493
25 2Y65 ADP 0.0000007463 0.52933 2.71493
26 3BFV ADP 0.00001847 0.52872 2.71493
27 5K5Z ANP 0.0000675 0.52556 2.71493
28 2VB6 ADP BEF 0.00007577 0.52099 2.71493
29 4PFO ADP 0.0001007 0.51901 2.71493
30 3BOS CDP 0.00007176 0.50124 2.71493
31 5WRJ A3P 0.002775 0.44616 2.71493
32 2ORV 4TA 0.003129 0.44525 2.71493
33 2OBM ADP 0.0001389 0.4442 2.71493
34 1G3M A3P 0.01999 0.41949 2.71493
35 1G3M PCQ 0.01999 0.41949 2.71493
36 2ZPT A3P 0.03611 0.41733 2.71493
37 5EP2 AZU 0.01029 0.4131 2.71493
38 5K2M ADP 0.01651 0.40792 2.71493
39 1J99 AND 0.0275 0.40709 2.71493
40 2B4D COA 0.01308 0.40801 2.92398
41 1W4R TTP 0.0006543 0.48226 3.07692
42 3WXM GTP 0.000000000857 0.76948 3.16742
43 2C78 GNP 0.0000000009214 0.75816 3.16742
44 4J0Q GDP 0.000000000131 0.74938 3.16742
45 2C77 GNP 0.00000000378 0.72491 3.16742
46 1SKQ GDP 0.000000001349 0.70415 3.16742
47 5J1J ANP 0.000004742 0.5799 3.16742
48 2HF9 GSP 0.00000007312 0.57814 3.16742
49 4V03 ADP 0.000003516 0.56926 3.16742
50 2WOJ ADP ALF 0.00001328 0.56458 3.16742
51 3ZS9 ADP ALF 0.00001409 0.5633 3.16742
52 1P72 ADP 0.00008854 0.53236 3.16742
53 2ZPA ADP 0.00004124 0.52685 3.16742
54 5I0H ADP BEF 0.0000504 0.5251 3.16742
55 5I34 GDP 0.00003232 0.52064 3.16742
56 2ZR9 DTP 0.0000371 0.5146 3.16742
57 4IOK ADP 0.0003871 0.49362 3.16742
58 4IOK XPO 0.0003132 0.49278 3.16742
59 4PPF FLC 0.0000009933 0.48478 3.16742
60 2GMV UN8 0.002348 0.45459 3.16742
61 2GMV PEP 0.002919 0.45279 3.16742
62 1NHX FTB 0.006405 0.45013 3.16742
63 1NHX PEP 0.006363 0.44933 3.16742
64 2GK6 ADP 0.0004527 0.44694 3.16742
65 1AQU A3P 0.007572 0.41577 3.16742
66 1OJ4 ANP 0.01115 0.40768 3.16742
67 4EUE NAI 0.03273 0.40319 3.16742
68 3MGB PAP 0.01777 0.40152 3.16742
69 2OFW ADX 0.0001202 0.53428 3.36538
70 3VMF GTP 0.0000000008341 0.77006 3.61991
71 3FKQ ATP 0.000004029 0.57265 3.61991
72 2VVG ADP 0.00000009038 0.54246 3.61991
73 2Q2Y ADP 0.00009899 0.53995 3.61991
74 2Q2Y MKR 0.000106 0.5371 3.61991
75 3P4X ADP 0.00001224 0.52557 3.61991
76 5N69 ADP 0.00005141 0.517 3.61991
77 4P32 ADP 0.00008615 0.51609 3.61991
78 5LB3 ADP 0.00003785 0.50451 3.61991
79 1SVM ATP 0.0006785 0.50428 3.61991
80 3QF7 ANP 0.0001222 0.50413 3.61991
81 5GJC ATP 0.00009216 0.49618 3.61991
82 4BFW ZVW 0.001139 0.48505 3.61991
83 1W5T ANP 0.0004103 0.48098 3.61991
84 1DAK DPU 0.001523 0.48072 3.61991
85 1DAK ADP 0.00764 0.47185 3.61991
86 1W5T ADP 0.001049 0.45694 3.61991
87 1JJV ATP 0.00002198 0.49198 3.8835
88 2PEZ GGZ 0.00007229 0.53682 3.91061
89 2PEZ DAT 0.00007229 0.53682 3.91061
90 2QG6 NMN 0.0008253 0.47723 4.0201
91 5H67 ATP 0.001084 0.44899 4.0201
92 2RCN GDP 0.00000000003053 0.79819 4.0724
93 1FP6 ADP 0.000003095 0.57509 4.0724
94 4LYA ATP 0.000003421 0.56644 4.0724
95 1QF5 GDP 0.000271 0.52734 4.0724
96 1KK8 BEF ADP 0.00004181 0.52399 4.0724
97 3EWA ANP 0.0000275 0.52066 4.0724
98 1V8K ANP 0.00003382 0.51647 4.0724
99 1JI0 ATP 0.000114 0.50593 4.0724
100 5G41 AP5 0.0006201 0.50429 4.0724
101 2C04 GCP 0.00001245 0.49114 4.0724
102 2FAH GDP 0.0002724 0.48253 4.0724
103 1XP8 AGS 0.0001575 0.47509 4.0724
104 4GBM A3P 0.001067 0.46477 4.0724
105 4LJ9 ACP 0.0006921 0.45536 4.0724
106 2JJK R15 0.009112 0.44299 4.0724
107 3BER AMP 0.001806 0.43593 4.0724
108 4ITM ATP 0.005044 0.43498 4.0724
109 1BZL FAD 0.04329 0.43172 4.0724
110 3KC1 2T6 0.01089 0.41007 4.0724
111 1PK8 ATP 0.02518 0.40026 4.0724
112 1Z83 AP5 0.0002843 0.50821 4.08163
113 1ZIN AP5 0.0001841 0.52601 4.14747
114 4MKF AP5 0.0003967 0.50995 4.14747
115 1XX6 ADP 0.0003631 0.46842 4.18848
116 4TMK T5A 0.006641 0.43865 4.22535
117 4QRH 0O2 0.002969 0.43932 4.28571
118 2F3R G5P 0.004068 0.44821 4.34783
119 1XEX ATP 0.0001273 0.51397 4.3956
120 3KTA AP5 0.00007891 0.50814 4.3956
121 1D2N ANP 0.00173 0.45069 4.41176
122 1B7T ADP 0.00009709 0.50111 4.48718
123 4ZKD GDP 0.000000001291 0.76367 4.52489
124 3KJI ADP 0.000002819 0.57701 4.52489
125 1G3Q ADP 0.000004537 0.56068 4.52489
126 1E2K TMC 0.00005978 0.55128 4.52489
127 1NJF ADP 0.00001668 0.5458 4.52489
128 1NJF AGS 0.00003713 0.53389 4.52489
129 3B5J 12D 0.00000564 0.52549 4.52489
130 3ZFD ANP 0.00003388 0.52273 4.52489
131 1L2T ATP 0.00009215 0.51891 4.52489
132 3EZ2 ADP 0.00006278 0.49428 4.52489
133 5M7P ADP 0.0002087 0.49293 4.52489
134 4FCW ADP 0.0002342 0.48025 4.52489
135 5BYK OAQ 0.01344 0.42845 4.52489
136 5BYK A3P 0.01344 0.42845 4.52489
137 4A4Z ANP 0.003687 0.42147 4.52489
138 1S3G AP5 0.0002716 0.51727 4.60829
139 5H56 TYD 0.0000219 0.55955 4.61538
140 5H56 ADP 0.0000219 0.55955 4.61538
141 4X8O AP5 0.0005809 0.50577 4.6729
142 4CVN ADP 0.000004471 0.53098 4.71204
143 3R96 ACO 0.02356 0.41478 4.78723
144 3R96 AMP 0.02356 0.41478 4.78723
145 2IL4 COA 0.004547 0.4243 4.85437
146 4WOP CTP 0.0005954 0.47314 4.88889
147 5L3W GDP 0.0000008499 0.59842 4.97738
148 1IHU ADP 0.000002157 0.59664 4.97738
149 1IHU AF3 0.00000191 0.59664 4.97738
150 5FHD ADP ALF 0.00002417 0.54055 4.97738
151 3A4M ADP 0.000003165 0.53564 4.97738
152 2OZE AGS 0.00002923 0.53405 4.97738
153 1G6H ADP 0.0000001982 0.5265 4.97738
154 4HSE ADP 0.00002524 0.52568 4.97738
155 1G41 ADP 0.00003206 0.52386 4.97738
156 2AWN ADP 0.00000006382 0.52022 4.97738
157 3NHB ADP 0.00000316 0.51897 4.97738
158 2XAU ADP 0.00004495 0.51692 4.97738
159 5XDR ADP 0.00004657 0.51319 4.97738
160 5FTB ANP 0.00006137 0.51053 4.97738
161 4IHQ ADP 0.00002933 0.50792 4.97738
162 3FVQ ATP 0.0001203 0.50679 4.97738
163 1OFH ADP 0.00009318 0.50195 4.97738
164 1NST A3P 0.003465 0.43207 4.97738
165 2ZW5 COA 0.01254 0.41227 4.97738
166 4XTR ATP 0.00001353 0.55761 5.06912
167 4XTR ADP 0.000009482 0.55761 5.06912
168 4XVU ATP 0.00001497 0.55546 5.06912
169 4MKG AP5 0.0004232 0.50731 5.06912
170 1KO8 6PG 0.00003551 0.52998 5.14286
171 2ZTS ADP 0.00005174 0.44691 5.17928
172 5BQ5 ADP BEF 0.00006644 0.5089 5.29101
173 1BO4 COA 0.004997 0.41531 5.35714
174 4P4T GDP 0.0000002993 0.62991 5.42986
175 4RZ3 ADP 0.000004488 0.5704 5.42986
176 1FNN ADP 0.00002868 0.53445 5.42986
177 3LRE ADP 0.0000002673 0.52548 5.42986
178 4IEE AGS 0.000192 0.48783 5.42986
179 1OYY AGS 0.003976 0.41994 5.42986
180 5GVR LMR 0.00001425 0.41199 5.42986
181 2QQ0 ANP 0.0002151 0.51286 5.43478
182 2QQ0 THM 0.0001862 0.51286 5.43478
183 2QQ0 TMP 0.0002266 0.51172 5.43478
184 2W58 ADP 0.0000007051 0.50845 5.44554
185 1VHT BA3 0.000197 0.48658 5.50459
186 4R2I ANP 0.0003744 0.45383 5.71429
187 2NCD ADP 0.0000007939 0.62044 5.88235
188 3E70 GDP 0.0000003647 0.61209 5.88235
189 4H1V GNP 0.000001863 0.58869 5.88235
190 3COB ADP 0.0000001297 0.5579 5.88235
191 1F9V ADP 0.0000004163 0.55748 5.88235
192 3H4S ADP 0.0000001766 0.55185 5.88235
193 4FRZ ADP 0.0000005714 0.55144 5.88235
194 2CHG ANP 0.00003444 0.52802 5.88235
195 3QKT ANP 0.00007717 0.5227 5.88235
196 1RRC ADP 0.0000009297 0.52215 5.88235
197 5X40 ACP 0.0001073 0.5136 5.88235
198 2DPY ADP 0.00007983 0.51354 5.88235
199 2PZE ATP 0.000001678 0.51254 5.88235
200 4WZ6 ATP 0.000008421 0.50398 5.88235
201 3Q9L ATP 0.0001147 0.50299 5.88235
202 3B7G ANP 0.00008667 0.50052 5.88235
203 4IDN GNP 0.0001962 0.49868 5.88235
204 3QXC ATP 0.0004508 0.48862 5.88235
205 2D7D ADP 0.0004119 0.46587 5.88235
206 3T34 GDP 0.00001772 0.4517 5.88235
207 4W6Z 8ID 0.0358 0.43023 5.88235
208 1Y63 ADP 0.000001694 0.57708 5.97826
209 1QF9 ALF 0.0004695 0.50122 6.18557
210 1QF9 ADP 0.0004695 0.50122 6.18557
211 1QF9 C5P 0.0004695 0.50122 6.18557
212 2XTZ GSP 0.000000003313 0.74047 6.33484
213 1KK1 GNP 0.0000000007109 0.71562 6.33484
214 2CBZ ATP 0.0000005116 0.6465 6.33484
215 5IRR GSP 0.0000006846 0.61835 6.33484
216 5IFS ADP 0.00002206 0.53154 6.33484
217 4U00 ADP 0.0000001845 0.52756 6.33484
218 1IN4 ADP 0.00004098 0.52699 6.33484
219 1P9B GDP 0.00005081 0.51993 6.33484
220 2BEK ATP 0.0002655 0.51524 6.33484
221 3RLF ANP 0.000105 0.51407 6.33484
222 4PX9 ADP 0.00003162 0.50673 6.33484
223 1R0X ATP 0.0001271 0.48016 6.33484
224 1OE0 TTP 0.001512 0.46253 6.33484
225 2I4I AMP 0.00343 0.43228 6.33484
226 5MEX SZZ 0.03088 0.40865 6.33484
227 5MEX PAP 0.01476 0.40367 6.33484
228 4CZG ADP 0.03715 0.40246 6.33484
229 4CZG QH3 0.03884 0.40246 6.33484
230 1UKZ ADP 0.0002362 0.51229 6.40394
231 1YRB GDP 0.0000000000005868 0.89505 6.78733
232 3WY9 GDP 0.0000000000341 0.77482 6.78733
233 3WYA GDP 0.0000000001518 0.76574 6.78733
234 3CNL GNP 0.000000001605 0.70076 6.78733
235 5L3V GDP 0.0000003568 0.61624 6.78733
236 5L3S GNP 0.000001346 0.60917 6.78733
237 2CE7 ADP 0.00001691 0.537 6.78733
238 2ZFI ADP 0.00001295 0.5359 6.78733
239 1XKV ATP 0.000022 0.5316 6.78733
240 3DC4 ADP 0.000004175 0.52934 6.78733
241 5LTJ ADP 0.00002318 0.52742 6.78733
242 1OS1 ATP 0.0001682 0.5134 6.78733
243 1OS1 PYR 0.0001816 0.5134 6.78733
244 1CR1 TTP 0.00009568 0.51161 6.78733
245 4GOX A3P 0.000173 0.50345 6.78733
246 5VGR GDP 0.0001547 0.49677 6.78733
247 4JLV ADP 0.0002124 0.47124 6.78733
248 5MZN ADP 0.0004327 0.44962 6.78733
249 4AVB ACO 0.01993 0.40533 6.78733
250 2R75 01G 0.03024 0.40026 6.78733
251 5MVR ADP 0.00001132 0.53863 6.79012
252 3W5J GDP 0.0000002122 0.55368 6.86275
253 4TTQ ATP 0.00002418 0.52327 6.97674
254 2FH5 GTP 0.0000000002254 0.78423 7.00935
255 1ZUI SKM 0.00007671 0.54012 7.14286
256 1SVK ALF GDP 0.00000001092 0.72539 7.23982
257 2ODE ALF GDP 0.000000009901 0.72504 7.23982
258 1Y3A GDP 0.00000001486 0.70245 7.23982
259 1BH2 GSP 0.00000004248 0.69339 7.23982
260 2OM2 GDP 0.00000001976 0.69012 7.23982
261 1W0J ADP 0.00000714 0.55781 7.23982
262 1W0J ADP BEF 0.0002119 0.49261 7.23982
263 2PL3 ADP 0.0001129 0.48225 7.23982
264 3TBK ANP 0.0004496 0.44683 7.23982
265 2FSH ANP 0.0008922 0.44215 7.23982
266 2B8T THM 0.004767 0.43116 7.23982
267 3V2U ATP 0.01012 0.41519 7.23982
268 3H86 AP5 0.000168 0.52128 7.29167
269 4HUT ATP 0.007366 0.43255 7.32984
270 4BQS ADP 0.000007992 0.54567 7.38636
271 4BQS K2Q 0.00005978 0.54566 7.38636
272 1RM6 PCD 0.04991 0.40131 7.45342
273 3CX8 GSP 0.000000009324 0.72634 7.69231
274 3AB3 GDP 0.000000003713 0.72529 7.69231
275 1ZCB GDP 0.00000002156 0.70029 7.69231
276 5L3R GCP 0.000001579 0.60577 7.69231
277 5IRN ADP 0.000003019 0.5756 7.69231
278 3B9Q MLI 0.0000123 0.56866 7.69231
279 4Q1A UDP 0.0003776 0.56546 7.69231
280 4Q1A 2XZ 0.0003776 0.56546 7.69231
281 2QZ4 ADP 0.00003208 0.52385 7.69231
282 2BIF SIN 0.0003522 0.51496 7.69231
283 2BIF ANP 0.0002094 0.51496 7.69231
284 2ZE7 DST 0.003093 0.44709 7.69231
285 2ZE7 AMP 0.002872 0.44709 7.69231
286 2OG2 MLI 0.00000382 0.42783 7.69231
287 1Q20 A3P 0.0179 0.41667 7.69231
288 1Q20 PLO 0.0179 0.41667 7.69231
289 5KUT GDP 0.000000007876 0.6903 7.93651
290 3UIE ANP 0.000007638 0.55332 8
291 1AZT GSP 0.000000008942 0.72725 8.1448
292 1K6M AGS 0.0001085 0.51337 8.1448
293 1XMV ADP 0.00004715 0.51294 8.1448
294 2VF7 ADP 0.0000722 0.50425 8.1448
295 4PJ3 ANP 0.0007536 0.46149 8.1448
296 4YMU ATP 0.000008849 0.52982 8.18182
297 1NRJ GTP 0.0000000231 0.68684 8.25688
298 1NN5 ANP 0.000156 0.51834 8.37209
299 1NN5 2DT 0.02065 0.43705 8.37209
300 1G7C 5GP 0.00000002043 0.6665 8.51064
301 1PUJ GNP 0.00000000175 0.72966 8.59729
302 3FWY ADP 0.0000008438 0.60517 8.59729
303 4QOS ADP 0.00006352 0.50982 8.59729
304 3PQC GDP 0.000000005077 0.70357 8.71795
305 4QM7 GTP 0.000009512 0.54215 8.77193
306 2JAQ DCP 0.001643 0.45558 8.78049
307 3FB4 AP5 0.000298 0.51519 8.7963
308 2WJH GDP 0.000000003229 0.70849 9.03614
309 2WJH FLC 0.000001419 0.58789 9.03614
310 4NON GDP 0.000000004114 0.74146 9.04977
311 1YTM ATP 0.00007729 0.5161 9.04977
312 1U0J ADP 0.0001421 0.4775 9.04977
313 4RD0 GDP 0.0000000003186 0.78061 9.50226
314 2QN6 GDP 0.00000000007634 0.75955 9.50226
315 4LPS GDP 0.00000006152 0.64838 9.50226
316 1ION ADP 0.000007755 0.55301 9.50226
317 1B0U ATP 0.00002928 0.52863 9.50226
318 2WHX ADP 0.00001332 0.49551 9.50226
319 1TKB N1T 0.02724 0.40946 9.50226
320 4HI0 GDP 0.0000000335 0.67901 9.54774
321 5TSH ANP 0.00001157 0.53819 9.95475
322 1Z6T ADP 0.00004503 0.52244 9.95475
323 5TSH ADP 0.000007406 0.50786 9.95475
324 2JLR ANP 0.0001238 0.49884 9.95475
325 5KSP GDP 0.0000006826 0.59931 10
326 2WJG GDP 0.000000002942 0.70573 10.1064
327 2HCJ GDP 0.0000000000215 0.78311 10.4072
328 1D8T GDP 0.00000000007218 0.78078 10.4072
329 3U6B GDP 0.00000000002493 0.7804 10.4072
330 5JBQ GDP 0.00000000009678 0.77484 10.4072
331 4G5G GDP 0.00000000009866 0.77445 10.4072
332 4P3Y GDP 0.0000000000343 0.77442 10.4072
333 2BVN GNP 0.0000000002401 0.77072 10.4072
334 3U6K GDP 0.0000000002644 0.7545 10.4072
335 4PC3 GDP 0.000000001539 0.73232 10.4072
336 3FYH ADP 0.0000809 0.52169 10.4072
337 4XGU ADP 0.00005662 0.51768 10.4072
338 2IS6 ADP 0.00003866 0.51376 10.4072
339 1FQJ GDP 0.0000000046 0.72737 10.8844
340 1LVG ADP 0.0000005499 0.56902 11.1111
341 3ZIA ADP 0.00001677 0.54016 11.1111
342 3ZIA ATP 0.00001666 0.53415 11.1111
343 5KDO GDP 0.00000003944 0.67558 11.3122
344 1X6V ADP 0.00007864 0.52991 11.3122
345 1UJ2 C5P 0.0001189 0.51733 11.3122
346 1UJ2 ADP 0.0001877 0.5075 11.3122
347 1M7G AV2 0.000001022 0.57307 11.3744
348 1M7G ADX 0.00001281 0.57307 11.3744
349 1M7G ADP 0.00001599 0.56453 11.3744
350 2ZFZ ARG 0.04756 0.40649 11.3924
351 2RGX AP5 0.0003992 0.51098 11.6505
352 5GOE GDP 0.000000001924 0.7235 11.7647
353 3DEF GDP 0.0000004242 0.61617 11.7647
354 2XT3 ADP 0.0000001166 0.55916 11.7647
355 1SQ5 ADP 0.00006439 0.50658 11.7647
356 2Z5F A3P 0.008289 0.41766 11.7647
357 3TMK T5A 0.0002089 0.50869 12.037
358 5CK5 GDP 0.00000000003712 0.77261 12.2172
359 1RJ9 GCP 0.000003879 0.6171 12.2172
360 1H65 GDP 0.000001033 0.60964 12.2172
361 4WZA ACP 0.00002084 0.5957 12.2172
362 4WZA ADP 0.00002084 0.5957 12.2172
363 2IYL GDP 0.0000008073 0.59208 12.2172
364 3IO3 ADP 0.000008537 0.55981 12.2172
365 1OXV ANP 0.00001254 0.5229 12.2172
366 4NE2 SH2 0.0003213 0.50967 12.2172
367 4NE2 ADP 0.000284 0.50967 12.2172
368 1NY5 ADP 0.0002304 0.48849 12.2172
369 5HCN GCP 0.00000000002435 0.80815 12.6697
370 4TMZ GSP 0.000000000284 0.78656 12.6697
371 4NCN GTP 0.0000000003309 0.78332 12.6697
372 1G7S GDP 0.0000000001238 0.77499 12.6697
373 1DAR GDP 0.000000003983 0.69959 12.6697
374 1T5C ADP 0.0000004109 0.51878 12.6697
375 5FG3 GDP 0.000000000003585 0.81679 13.1222
376 1F2U ATP 0.0001709 0.50951 13.4228
377 1TQ4 GDP 0.0000000004182 0.62392 13.5747
378 2H7C COA 0.02967 0.42467 13.5747
379 4E03 ADP 0.000005461 0.5569 13.5922
380 4B47 GDP 0.000000000001713 0.83098 14.0271
381 1JJ7 ADP 0.0000001572 0.52978 14.0271
382 5K04 COA 0.01442 0.40927 14.0271
383 5M04 GDP 0.000000000005762 0.80807 14.4796
384 4D81 ADP 0.0000358 0.52448 14.9321
385 4YSX FAD 0.03515 0.40941 15.4255
386 4YDS ATP 0.000009149 0.51706 16.2896
387 5J1S ATP 0.0001975 0.50263 17.0732
388 1IWE IMP 0.0002275 0.56141 17.1946
389 1WDT GTP 0.0000002019 0.54342 17.1946
390 4OI4 ATP 0.0002187 0.49846 17.3913
391 4R98 GNH 0.00000002068 0.66625 18.0812
392 3IIJ ADP 0.000004772 0.55611 18.3333
393 4ZG4 VO4 ADP 0.00005784 0.52673 18.552
394 5HR5 ADP 0.00007282 0.51244 19.0045
395 5HR5 FLC 0.03124 0.40312 19.0045
396 1W7J ADP BEF 0.00004577 0.5221 19.457
397 2X77 GDP 0.00000000009113 0.78124 19.5767
398 1CS4 GSP 0.00000001516 0.51351 20.7547
399 4M9Q GNP 0.0000000001987 0.7906 20.8145
400 3DOE GTP 0.0000000002231 0.79169 20.8333
401 2KIN ADP 0.0000001604 0.5327 21
402 1UPT GTP 0.0000000006902 0.76426 21.0526
403 3AQ4 GDP 0.0000000002226 0.76303 21.1957
404 1D2E GDP 0.0000000008676 0.74417 21.267
405 1KSH GDP 0.00000000005706 0.81313 21.5054
406 1F6B GDP 0.0000000008968 0.73461 21.7172
407 1MKY GDP 0.00000000004598 0.78991 21.7195
408 1MR3 G3D 0.00000000003579 0.8003 22.0994
409 1HTW ADP 0.000005535 0.55662 22.1519
410 2J59 GTP 0.0000000005684 0.77182 22.2892
411 1O3Y GTP 0.0000000006036 0.77054 22.2892
412 1J2J GTP 0.000000001113 0.58041 22.2892
413 4YLG GDP 0.0000000001275 0.78816 22.5434
414 4KAX GTP 0.000000001113 0.75416 23.0769
415 2WIC GNP 0.000000006704 0.69359 23.0769
416 1RE0 GDP 0.0000000000354 0.77411 23.1707
417 1S9D GDP 0.00000000028 0.75835 23.1707
418 2A5F GTP 0.000000004363 0.73159 23.4286
419 3PCR GTP 0.0000000008803 0.58442 24.0741
420 4DCT GDP 0.00000000004278 0.79666 24.4344
421 3N5C GDP 0.0000000003638 0.74804 24.6914
422 2W83 GTP 0.000000001049 0.75879 24.8485
423 1M2O GNP 0.00000001377 0.70991 25.2632
424 3A1S GDP 0.00000008917 0.64081 25.7919
425 2V7Q ATP 0.000004416 0.56458 28
426 2CK3 ADP 0.0002243 0.49792 28
427 2CK3 ANP 0.0002397 0.49003 28
428 2V7Q ADP 0.0001363 0.48827 28
429 4ZI2 GNP 0.00000000004747 0.82088 28.4211
430 2WKQ GTP 0.000000003141 0.56543 28.5068
431 4GOJ GNP 0.00000000006894 0.81299 28.5714
432 2QTV GNP 0.000000009343 0.71533 28.7425
433 1FZQ GDP 0.000000000009932 0.82092 29.2818
434 1YZG GDP 0.0000000008045 0.73683 29.6089
435 2J0V GDP 0.0000000006071 0.74257 29.717
436 5JCP GDP ALF 0.00000001456 0.6896 29.8643
437 1ZJ6 G3D 0.0000000003215 0.75553 30.4813
438 3T12 GDP ALF 0.000000011 0.7057 30.8081
439 3T1O GDP 0.000000007483 0.6956 30.8081
440 4BAS GNP 0.00000002367 0.68951 31.6583
441 1GWN GTP 0.00000009473 0.65715 31.7073
442 3T5G GDP 0.00000000008282 0.78809 32.0442
443 1RYH GNP 0.000000000481 0.75196 32.5123
444 1XTQ GDP 0.0000000003895 0.77985 32.7684
445 1DS6 GDP 0.0000000001947 0.76069 33.3333
446 1E96 GTP 0.000000004049 0.73617 33.3333
447 4V0K GDP 0.000000002104 0.74717 33.7278
448 1I4D GDP 0.0000000002127 0.7394 33.8542
449 5DI3 GNP 0.0000000002731 0.78388 34.0541
450 2W2X GSP 0.000000007927 0.70934 34.0541
451 2GCN GDP 0.000000005989 0.71857 34.3284
452 2GCO GNP 0.000000004449 0.71426 34.3284
453 4D0N GDP 0.000000001535 0.7189 35.1351
454 1M7B GTP 0.0000000425 0.5565 35.3261
455 4ITR GDP 0.000000002897 0.72694 35.6021
456 5HPY GDP 0.000000004529 0.7139 35.6757
457 3LXR GDP 0.000000001422 0.675 35.6757
458 2WMO GTP 0.000000004358 0.7067 35.7895
459 1G4U GDP 0.000000003775 0.7214 35.8696
460 4XOI GTP 0.00000002648 0.69308 36.1111
461 2FJU GSP 0.000000001237 0.74842 36.5169
462 4XSH GSP 0.000000006529 0.70994 36.8715
463 4YC7 GNP 0.000000003845 0.72794 37.0166
464 1MH1 GNP 0.0000000026 0.74858 37.0968
465 4DID GDP 0.000000001055 0.73131 37.8238
466 1HE1 GDP 0.000000001136 0.6065 38.0682
467 1HE1 AF3 0.006816 0.41847 38.0682
468 3SBD GNP 0.000000008605 0.71999 38.5027
469 1R4A GNP 0.0000000001224 0.80792 38.7879
470 5EE5 GTP 0.0000000001131 0.80252 39.1813
471 1ZD9 GDP 0.0000000008178 0.7534 39.3617
472 4DKX GDP 0.00000000002056 0.8062 41.6667
473 2BCG GDP 0.00000000002597 0.82558 42.233
474 4DSU GDP 0.00000000008882 0.82135 42.328
475 2ZEJ GDP 0.0000000006334 0.77901 42.3913
476 1OIX GDP 0.0000000003069 0.79152 42.4084
477 4U5X GNP 0.000000005046 0.71533 42.6966
478 2F9L GDP 0.0000000005859 0.77117 42.7136
479 1OIV GDP 0.0000000001446 0.80767 42.9319
480 3CPJ GDP 0.00000000002973 0.81391 42.9864
481 5UQW GDP 0.00000000004573 0.82894 43.3862
482 2CJW GDP 0.000000000006155 0.83061 43.75
483 5TAR GDP 0.000000000004814 0.85154 43.7838
484 5TB5 GDP 0.000000000006194 0.84134 43.7838
485 2A9K GDP 0.00000000004234 0.81108 44.9198
486 3Q85 GNP 0.000000000001607 0.85779 45.5621
487 5JCZ GDP 0.0000000003327 0.77221 45.8101
488 1Z06 GNP 0.00000000001654 0.85067 46.0317
489 3BC1 GNP 0.00000000004345 0.83346 46.1538
490 2EW1 GNP 0.00000000002792 0.83587 46.2687
491 1VG8 GNP 0.00000000003042 0.84444 46.3768
492 1VG0 GDP 0.0000000000112 0.83409 46.3768
493 5XCO GDP 0.0000000000131 0.83085 46.7836
494 3Q72 GNP 0.00000000007949 0.75908 46.988
495 1YZN GNP 0.0000000001725 0.80704 47.027
496 3RWO GDP 0.0000000002699 0.79427 47.027
497 2A5J GDP 0.000000000007584 0.83719 47.1204
498 4K81 GTP 0.0000000002412 0.80284 47.3684
499 2C5L GTP 0.0000000001243 0.81411 47.3988
500 4C4P GNP 0.0000000001652 0.80797 47.3988
501 1ZC3 GNP 0.00000000006985 0.82653 47.4286
502 4LX0 BEF GDP 0.0000000004219 0.78777 47.4576
503 5SZH GNP 0.00000000002477 0.84886 47.7833
504 5O2T GSP 0.0000000001654 0.80794 47.929
505 1UAD GNP 0.00000000016 0.80549 48
506 5UFQ GNP 0.0000000001413 0.80817 48.1928
507 2UZI GTP 0.0000000002386 0.79692 48.7952
508 1CLU DBG 0.000000001626 0.7914 48.7952
509 5E95 GDP 0.000000000007749 0.8464 48.8095
510 1G16 GDP 0.0000000003057 0.78149 48.8235
511 2HT6 GDP 0.000000000002988 0.82138 48.8506
512 1X1R GDP 0.00000000004878 0.83426 48.8764
513 3TKL GTP 0.00000000006218 0.82238 48.9796
514 3KUD GDP 0.00000000003039 0.82639 49.3976
515 1U8Z GDP 0.0000000001148 0.80581 49.4048
516 1Z0J GTP 0.0000000003551 0.79149 49.4118
517 1KY3 GDP 0.00000000003527 0.81037 49.4506
518 1YVD GNP 0.00000000009565 0.81653 49.7041
519 5WDR GNP 0.0000000001156 0.81567 49.7076
520 3DDC GNP 0.0000000000394 0.83886 50
Pocket No.: 2; Query (leader) PDB : 3GJ0; Ligand: GDP; Similar sites found: 6
This union binding pocket(no: 2) in the query (biounit: 3gj0.bio1) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5X62 SAH 0.007929 0.40284 3.61991
2 1QF5 RPL 0.01455 0.45103 4.0724
3 1BXG NAD 0.01205 0.40773 4.0724
4 4OHY ANP 0.0007441 0.40215 4.52489
5 1F5N GNP 0.0003229 0.40192 8.1448
6 2VOH CIT 0.00647 0.40291 11.465
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