Receptor
PDB id Resolution Class Description Source Keywords
3GJ4 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF3 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
C:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ4 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF3 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 171 families.
1 3CH5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3GJ3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ4; Ligand: GDP; Similar sites found: 487
This union binding pocket(no: 1) in the query (biounit: 3gj4.bio2) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4D81 ADP 0.00003578 0.47653 None
2 4M7V NAP 0.02973 0.40422 1.14286
3 3DKP ADP 0.0001384 0.48794 1.80995
4 3IUY AMP 0.002235 0.43162 1.80995
5 3L9W AMP 0.02043 0.41257 1.80995
6 3L9W GSH 0.02042 0.41017 1.80995
7 2X7I CIT 0.006624 0.40958 1.80995
8 5WRJ A3P 0.003164 0.44336 2.26244
9 2FNA ADP 0.0000229 0.44319 2.26244
10 1GOJ ADP 0.00000009457 0.68457 2.71493
11 3ZQ6 ADP ALF 0.00001279 0.56538 2.71493
12 5KSZ GCP 0.000001408 0.55149 2.71493
13 3BFV ADP 0.00002591 0.52187 2.71493
14 2WOJ ADP ALF 0.00001774 0.42665 2.71493
15 3ZS9 ADP ALF 0.0000201 0.42578 2.71493
16 5K5Z ANP 0.00008162 0.41678 2.71493
17 1J99 AND 0.02647 0.40794 2.71493
18 2B4D COA 0.01334 0.4076 2.92398
19 4J0Q GDP 0.0000000001923 0.77495 3.16742
20 4PPF FLC 0.000001203 0.6284 3.16742
21 2ZPA ADP 0.0000433 0.52584 3.16742
22 2ZR9 DTP 0.00004506 0.51067 3.16742
23 5I34 GDP 0.0000384 0.50181 3.16742
24 4IOK ADP 0.0004006 0.49288 3.16742
25 4IOK XPO 0.0003118 0.49288 3.16742
26 2GK6 ADP 0.0004581 0.47621 3.16742
27 1AQU A3P 0.009068 0.412 3.16742
28 2PWY SAH 0.01571 0.40899 3.16742
29 1OJ4 ANP 0.01047 0.40899 3.16742
30 2OFW ADX 0.0001208 0.53417 3.36538
31 1SVI GDP 0.0000000005015 0.72266 3.58974
32 2Q2Y ADP 0.00009081 0.54189 3.61991
33 2Q2Y MKR 0.00009161 0.54037 3.61991
34 2VVG ADP 0.0000001224 0.53746 3.61991
35 3P4X ADP 0.000008997 0.53121 3.61991
36 4P32 ADP 0.00008061 0.5175 3.61991
37 5GJC ATP 0.00007643 0.49997 3.61991
38 3QF7 ANP 0.0001521 0.49955 3.61991
39 2D7D ADP 0.0005013 0.46189 3.61991
40 2V5K OXM 0.02103 0.40186 3.83275
41 1JJV ATP 0.00001828 0.49202 3.8835
42 2PEZ DAT 0.0000777 0.53523 3.91061
43 3WY9 GDP 0.0000000000479 0.80383 4.0724
44 2RCN GDP 0.00000000003631 0.79469 4.0724
45 3WXM GTP 0.000000000862 0.76936 4.0724
46 3VMF GTP 0.0000000009338 0.76764 4.0724
47 3TK1 GDP 0.0000000000167 0.76414 4.0724
48 3WYA GDP 0.0000000002061 0.75954 4.0724
49 2C77 GNP 0.000000003777 0.72493 4.0724
50 2C78 GNP 0.0000000008537 0.59945 4.0724
51 4WZ6 ATP 0.000009568 0.56637 4.0724
52 1JI0 ATP 0.000006904 0.56584 4.0724
53 2IXE ATP 0.0000657 0.52182 4.0724
54 5G41 AP5 0.0005157 0.50849 4.0724
55 2FAH GDP 0.0002379 0.48533 4.0724
56 2C04 GCP 0.0000161 0.4844 4.0724
57 4FCW ADP 0.0002131 0.48217 4.0724
58 1XP8 AGS 0.0001601 0.47481 4.0724
59 4LJ9 ACP 0.0008323 0.45163 4.0724
60 4ITM ATP 0.004028 0.43982 4.0724
61 3BER AMP 0.002126 0.43263 4.0724
62 2D2F ADP 0.00005558 0.43029 4.0724
63 5MEX PAP 0.01297 0.4064 4.0724
64 4MKF AP5 0.000393 0.51017 4.14747
65 3FB4 AP5 0.0002646 0.51786 4.16667
66 1XX6 ADP 0.000377 0.46766 4.18848
67 4TMK T5A 0.005514 0.44277 4.22535
68 4QRH 0O2 0.002676 0.4415 4.28571
69 4KOT CE3 0.0315 0.40917 4.32099
70 2F3R G5P 0.004414 0.44641 4.34783
71 3KTA AP5 0.00007203 0.46298 4.3956
72 4LC1 GDP 0.0000000001635 0.76422 4.52489
73 3KJI ADP 0.000004351 0.56805 4.52489
74 3B5J 12D 0.000006461 0.56725 4.52489
75 3ZFD ANP 0.00000687 0.5555 4.52489
76 1NJF ADP 0.00001803 0.54416 4.52489
77 1NJF AGS 0.0000443 0.53016 4.52489
78 3EWA ANP 0.00002986 0.519 4.52489
79 2OBM ADP 0.0001281 0.51163 4.52489
80 1R0X ATP 0.000118 0.4817 4.52489
81 4KBF AMP 0.0009298 0.44183 4.52489
82 5M7P ADP 0.0002144 0.42771 4.52489
83 1K6M AGS 0.0001126 0.41153 4.52489
84 1L2T ATP 0.00008546 0.40673 4.52489
85 1S3G AP5 0.0003148 0.51396 4.60829
86 4CVN ADP 0.000004177 0.57658 4.71204
87 3MWL 8OX 0.01428 0.40258 4.83092
88 4WOP CTP 0.0006845 0.40625 4.88889
89 2AWN ADP 0.00000006942 0.71122 4.97738
90 1G6H ADP 0.0000002491 0.66815 4.97738
91 5L3W GDP 0.0000007933 0.59983 4.97738
92 3NHB ADP 0.000003419 0.58996 4.97738
93 2QEN ADP 0.00001923 0.54014 4.97738
94 3A4M ADP 0.000003368 0.53432 4.97738
95 2OZE AGS 0.00002908 0.53416 4.97738
96 1OXV ANP 0.00001343 0.52164 4.97738
97 1YQT ADP 0.000003055 0.5202 4.97738
98 2XAU ADP 0.0000398 0.51942 4.97738
99 4HSE ADP 0.00002277 0.50934 4.97738
100 1OFH ADP 0.00007881 0.50539 4.97738
101 1G41 ADP 0.00003753 0.48907 4.97738
102 1IHU AF3 0.000002401 0.48103 4.97738
103 1IHU ADP 0.000002634 0.47062 4.97738
104 3FVQ ATP 0.0001001 0.42817 4.97738
105 1NST A3P 0.004356 0.4273 4.97738
106 2X4Z X4Z 0.03655 0.40178 4.97738
107 4MKG AP5 0.0003722 0.51019 5.06912
108 4XTR ADP 0.00001405 0.47807 5.06912
109 4XTR ATP 0.00001992 0.44763 5.06912
110 4XVU ATP 0.00002266 0.4458 5.06912
111 1KO8 6PG 0.00003314 0.53143 5.14286
112 5BQ5 ADP BEF 0.00007901 0.47474 5.29101
113 3MD0 GDP 0.0000000001827 0.74187 5.42986
114 5GVR LMR 0.00002145 0.56556 5.42986
115 1FNN ADP 0.00003595 0.45465 5.42986
116 1OYY AGS 0.003346 0.42344 5.42986
117 4IDN GNP 0.0001507 0.41833 5.42986
118 2W58 ADP 0.0000008037 0.63797 5.44554
119 1VHT BA3 0.00019 0.46089 5.50459
120 4KFU ACP 0.000002446 0.52779 5.66038
121 4R2I ANP 0.0003619 0.48125 5.71429
122 1WF3 GNP 0.000000001023 0.76869 5.88235
123 3E70 GDP 0.0000004925 0.60596 5.88235
124 1F9V ADP 0.0000004253 0.55673 5.88235
125 3COB ADP 0.0000002105 0.54961 5.88235
126 3H4S ADP 0.0000002015 0.54944 5.88235
127 4FRZ ADP 0.0000007117 0.54769 5.88235
128 1RRC ADP 0.0000009182 0.52238 5.88235
129 4H1V GNP 0.000002029 0.52202 5.88235
130 3QKT ANP 0.00008388 0.52092 5.88235
131 2DPY ADP 0.00006493 0.51796 5.88235
132 2PZE ATP 0.00000175 0.51219 5.88235
133 3B7G ANP 0.0001202 0.4789 5.88235
134 3T34 GDP 0.00001831 0.45104 5.88235
135 4X1Z FUC GAL NDG 0.01761 0.40646 5.88235
136 3QXC ATP 0.0001438 0.40439 5.88235
137 3C2O NTM 0.02746 0.4011 5.88235
138 1UKZ ADP 0.0002856 0.5081 5.91133
139 1Y63 ADP 0.000001797 0.57588 5.97826
140 1NN5 ANP 0.0001432 0.52021 6.04651
141 1NN5 2DT 0.02456 0.4329 6.04651
142 2NCD ADP 0.0000009762 0.61594 6.06061
143 2J5V PCA 0.02476 0.41101 6.06061
144 1QF9 C5P 0.0004849 0.5005 6.18557
145 1YRB GDP 0.0000000000005999 0.78254 6.33484
146 2XTZ GSP 0.000000003888 0.73704 6.33484
147 1PUJ GNP 0.000000001733 0.72987 6.33484
148 5IFS ADP 0.00002666 0.52765 6.33484
149 4U00 ADP 0.0000001868 0.52736 6.33484
150 2PL3 ADP 0.0001026 0.50086 6.33484
151 1OE0 TTP 0.001493 0.46279 6.33484
152 3Q9L ATP 0.000127 0.44832 6.33484
153 3RLF ANP 0.00008594 0.41467 6.33484
154 4CZG ADP 0.02963 0.40756 6.33484
155 2FH5 GTP 0.0000000002429 0.63176 6.54206
156 1GXU 2HP 0.0001728 0.48723 6.59341
157 3CNL GNP 0.000000001839 0.72802 6.78733
158 1TAD GDP 0.000000009225 0.72658 6.78733
159 1GOT GDP 0.0000000396 0.67862 6.78733
160 3FWY ADP 0.000001201 0.59783 6.78733
161 5L3V GDP 0.000000528 0.5684 6.78733
162 2ZFI ADP 0.00001132 0.53863 6.78733
163 1CR1 TTP 0.00008504 0.51409 6.78733
164 1OS1 ATP 0.0001895 0.51081 6.78733
165 1OS1 PYR 0.0002045 0.51081 6.78733
166 1TAD ALF 0.000000009225 0.50923 6.78733
167 5L3S GNP 0.0000009954 0.47978 6.78733
168 4ZNL BEF ADP 0.0001253 0.47705 6.78733
169 4JLV ADP 0.0003555 0.46156 6.78733
170 5VGR GDP 0.0001493 0.44326 6.78733
171 1T3D CYS 0.004584 0.4307 6.78733
172 4GOX A3P 0.0002029 0.40734 6.78733
173 5MVR ADP 0.00001038 0.54038 6.79012
174 4TTQ ATP 0.00002321 0.5241 6.97674
175 5H56 TYD 0.00002407 0.55748 7.17949
176 5H56 ADP 0.00002407 0.55748 7.17949
177 2CE7 ADP 0.00002255 0.53109 7.23982
178 2FSH ANP 0.0007259 0.4462 7.23982
179 2B8T THM 0.00562 0.42767 7.23982
180 3H86 AP5 0.0001543 0.52317 7.29167
181 4HUT ATP 0.007218 0.43299 7.32984
182 3W5J GDP 0.0000001816 0.6563 7.35294
183 4BQS ADP 0.000009049 0.54316 7.38636
184 3AB3 GDP 0.000000005134 0.71847 7.69231
185 1ZCB GDP 0.00000002908 0.69386 7.69231
186 2OG2 MLI 0.000005507 0.58115 7.69231
187 3B9Q MLI 0.00002013 0.55481 7.69231
188 3CX8 GSP 0.00000001012 0.51047 7.69231
189 3VX3 ADP 0.000007958 0.48234 7.69231
190 5L3R GCP 0.000001312 0.47657 7.69231
191 5KSP GDP 0.0000008265 0.57574 7.89474
192 5KUT GDP 0.00000001115 0.68321 7.93651
193 3UIE ANP 0.000008644 0.55078 8
194 2QZ4 ADP 0.00003343 0.52301 8.1448
195 1CS4 GSP 0.00000001516 0.51499 8.1448
196 1AZT GSP 0.000000008965 0.51095 8.1448
197 5IRR GSP 0.000001003 0.49551 8.1448
198 3PQC GDP 0.000000005071 0.64986 8.71795
199 4QM7 GTP 0.000008654 0.54406 8.77193
200 4NON GDP 0.000000003618 0.5254 9.04977
201 2ODE ALF GDP 0.00000001148 0.50837 9.04977
202 1YTM ATP 0.00008672 0.43986 9.04977
203 1W0J ADP 0.000006334 0.56028 9.09091
204 1ZUI SKM 0.00005443 0.54774 9.09091
205 4ZKD GDP 0.000000001302 0.5443 9.09091
206 5I0H ADP BEF 0.00003656 0.53185 9.09091
207 4PX9 ADP 0.0000437 0.5186 9.09091
208 1W0J ADP BEF 0.0001719 0.49698 9.09091
209 1ION ADP 0.0000109 0.54601 9.50226
210 1G3Q ADP 0.000006269 0.53578 9.50226
211 2WJH GDP 0.0000000038 0.70516 9.63855
212 2WJH FLC 0.000001099 0.59315 9.63855
213 1SVK ALF GDP 0.00000001276 0.72201 9.95475
214 1BH2 GSP 0.00000004391 0.69268 9.95475
215 5TSH ANP 0.00001131 0.53864 9.95475
216 5TSH ADP 0.000007559 0.50762 9.95475
217 2JLR ANP 0.0001222 0.49911 9.95475
218 2WHX ADP 0.00001483 0.4938 9.95475
219 3U6B GDP 0.00000000003215 0.81212 10.4072
220 1D8T GDP 0.0000000001195 0.77057 10.4072
221 5JBQ GDP 0.0000000001262 0.76946 10.4072
222 4G5G GDP 0.0000000001286 0.76909 10.4072
223 4P3Y GDP 0.00000000004767 0.76821 10.4072
224 3U6K GDP 0.000000000337 0.74959 10.4072
225 2BVN GNP 0.0000000002356 0.68599 10.4072
226 4YMU ATP 0.000007782 0.55446 10.4072
227 2GDJ ANP 0.0001255 0.48993 10.4072
228 2WJG GDP 0.000000003814 0.70048 10.6383
229 1FQJ GDP 0.000000005812 0.56481 10.8844
230 1FQK GDP 0.00000003969 0.54281 10.8844
231 1LVG ADP 0.0000006715 0.56545 11.1111
232 3ZIA ADP 0.00001471 0.54287 11.1111
233 3ZIA ATP 0.00001618 0.53474 11.1111
234 5KDO GDP 0.00000005521 0.56157 11.3122
235 1GP2 GDP 0.00000004698 0.541 11.3122
236 1M7G ADX 0.00001348 0.57195 11.3744
237 1M7G AV2 0.000001164 0.57065 11.3744
238 1M7G ADP 0.00001512 0.56575 11.3744
239 2RGX AP5 0.0003807 0.51205 11.6505
240 2XT3 ADP 0.0000001187 0.67204 11.7647
241 5GOE GDP 0.000000003492 0.65956 11.7647
242 2IYL GDP 0.000000804 0.59216 11.7647
243 3DEF GDP 0.0000005132 0.55257 11.7647
244 5FTB ANP 0.00003667 0.48892 11.7647
245 1SQ5 ADP 0.00006872 0.48857 11.7647
246 5FHD ADP ALF 0.00001963 0.45368 11.7647
247 2Z5F A3P 0.009137 0.4156 11.7647
248 5H67 ATP 0.001131 0.43415 12.0603
249 3EC1 GDP 0.0000000000817 0.78347 12.1212
250 2CBZ ATP 0.0000004193 0.65225 12.1212
251 4AG5 ADP 0.000004105 0.58522 12.1212
252 4HI0 GDP 0.00000004783 0.55806 12.1212
253 4V03 ADP 0.000004363 0.52718 12.1212
254 5LTJ ADP 0.00002194 0.51003 12.1212
255 1G6O ADP 0.00002703 0.49204 12.1212
256 5LTJ BEF 0.001883 0.46382 12.1212
257 2C9O ADP 0.00002493 0.45207 12.1212
258 4PJ3 ANP 0.0007206 0.42716 12.1212
259 3V2U ATP 0.01195 0.41164 12.1212
260 4EUE NAI 0.03143 0.4041 12.1212
261 1H65 GDP 0.000001176 0.60691 12.2172
262 3IO3 ADP 0.00001229 0.55218 12.2172
263 1NRJ GTP 0.00000001936 0.69055 12.6582
264 5HCN GCP 0.00000000002637 0.77286 12.6697
265 4TMZ GSP 0.0000000002205 0.59907 12.6697
266 1T5C ADP 0.0000004811 0.51653 12.6697
267 1TQ4 GDP 0.0000000005412 0.62124 13.5747
268 1JJ7 ADP 0.0000001713 0.67779 14.0271
269 4E03 ADP 0.00000779 0.54965 14.0777
270 5M04 GDP 0.00000000001347 0.83019 14.4796
271 3LRE ADP 0.0000002814 0.65885 15.1515
272 4PC3 GDP 0.000000001889 0.65254 15.1515
273 4WZA ADP 0.00001658 0.60106 15.1515
274 4WZA ACP 0.00003029 0.58694 15.1515
275 3DC4 ADP 0.000002292 0.54183 15.1515
276 1V8K ANP 0.00001192 0.53758 15.1515
277 1XKV ATP 0.00002429 0.52957 15.1515
278 2BIF ANP 0.0002113 0.51475 15.1515
279 2BIF SIN 0.0003554 0.51475 15.1515
280 4IHQ ADP 0.00003026 0.50721 15.1515
281 3FKQ ATP 0.000004223 0.50452 15.1515
282 1P9B GDP 0.00005095 0.46513 15.1515
283 1Y3A GDP 0.00000002039 0.69572 15.3846
284 2OM2 GDP 0.00000002736 0.57104 15.3846
285 4YDS ATP 0.000008785 0.56069 16.2896
286 5J1S ATP 0.0001267 0.41222 17.0732
287 2ZTS ADP 0.00005591 0.44569 17.1315
288 1IWE IMP 0.0002099 0.56339 17.1946
289 1WDT GTP 0.0000002517 0.54054 17.1946
290 4LPS GDP 0.00000007862 0.6204 18.1818
291 2HF9 GSP 0.00000005195 0.58199 18.1818
292 4LYA ATP 0.000003186 0.54877 18.1818
293 4P4T GDP 0.0000004496 0.53335 18.1818
294 2Y65 ADP 0.0000007916 0.52791 18.1818
295 1BG2 ADP 0.0000002492 0.52616 18.1818
296 4PFO ADP 0.00009692 0.51983 18.1818
297 5X40 ACP 0.0001079 0.51348 18.1818
298 4R43 GDP 0.00004984 0.50862 18.1818
299 5MZN ADP 0.0002734 0.48724 18.1818
300 4XGU ADP 0.00004156 0.46895 18.1818
301 5J1J ANP 0.00000647 0.45912 18.1818
302 1Z6T ADP 0.00004923 0.45858 18.1818
303 2ZE7 DST 0.003336 0.44545 18.1818
304 2ZE7 AMP 0.003099 0.44545 18.1818
305 3RC3 ANP 0.002891 0.43144 18.1818
306 2VB6 ADP BEF 0.00006952 0.41824 18.1818
307 4ZG4 VO4 ADP 0.00006708 0.41769 18.1818
308 1W7J ADP BEF 0.00004208 0.46074 18.552
309 3IIJ ADP 0.000004862 0.55573 18.8889
310 5HR5 ADP 0.0000735 0.4521 19.0045
311 2X77 GDP 0.00000000009468 0.74755 19.5767
312 3DOE GTP 0.0000000002561 0.78876 20.8333
313 2KIN ADP 0.0000001985 0.52934 21
314 1UPT GTP 0.0000000008114 0.76084 21.0526
315 3AQ4 GDP 0.0000000003464 0.72394 21.1957
316 4M9Q GNP 0.0000000002664 0.61542 21.2121
317 1JWY GDP 0.0000009791 0.54555 21.2121
318 1R6B ADP 0.00005088 0.51138 21.2121
319 2B8W ALF 5GP 0.000202 0.50215 21.2121
320 4RZ3 ADP 0.000004985 0.50129 21.2121
321 5XDR ADP 0.0000466 0.49605 21.2121
322 1JWY ADP 0.00005021 0.49453 21.2121
323 1B0U ATP 0.00003184 0.4755 21.2121
324 5N69 ADP 0.00004339 0.47203 21.2121
325 1B7T ADP 0.00009308 0.47105 21.2121
326 1KK8 BEF ADP 0.00004265 0.46103 21.2121
327 1QHG ATP 0.001861 0.44279 21.2121
328 4YS0 ADP 0.0007101 0.4187 21.2121
329 1QHH ATP 0.00397 0.41179 21.2121
330 2VOH CIT 0.004749 0.40736 21.2121
331 1KSH GDP 0.00000000006121 0.81166 21.5054
332 1F6B GDP 0.000000001358 0.72615 21.7172
333 1MR3 G3D 0.00000000006026 0.78968 22.0994
334 1HTW ADP 0.00000623 0.55421 22.1519
335 2J59 GTP 0.0000000005815 0.59066 22.2892
336 1O3Y GTP 0.000000000721 0.58866 22.2892
337 1J2J GTP 0.0000000009391 0.58448 22.2892
338 4YLG GDP 0.0000000001818 0.66984 22.5434
339 2WIC GNP 0.000000008335 0.6633 23.0769
340 4R98 GNH 0.00000002924 0.65925 23.0769
341 1RE0 GDP 0.00000000005767 0.76494 23.1707
342 1S9D GDP 0.0000000005295 0.71629 23.1707
343 4KAX GTP 0.000000001218 0.75226 23.6686
344 2A5F GTP 0.000000004135 0.73274 24
345 1MKY GDP 0.00000000006869 0.78178 24.2424
346 5CK5 GDP 0.00000000004067 0.77093 24.2424
347 1UJ2 C5P 0.0001184 0.51744 24.2424
348 1FP6 ADP 0.000003856 0.51655 24.2424
349 1XMV ADP 0.00004731 0.51287 24.2424
350 1UJ2 ADP 0.0001858 0.50772 24.2424
351 2VF7 ADP 0.00007268 0.50411 24.2424
352 2XTN GTP 0.0000005653 0.49729 24.2424
353 4A4Z ANP 0.003512 0.42246 24.2424
354 1G3M PCQ 0.02077 0.41862 24.2424
355 2ZPT A3P 0.03724 0.4166 24.2424
356 3R96 AMP 0.02269 0.41562 24.2424
357 3R96 ACO 0.02269 0.41562 24.2424
358 4DCT GDP 0.00000000004781 0.76016 24.4344
359 3PCR GTP 0.000000001115 0.5833 24.6914
360 1M2O GNP 0.00000001161 0.71356 25.2632
361 3N5C GDP 0.0000000005305 0.7404 25.3086
362 2W83 GTP 0.000000001076 0.58435 25.4545
363 3A1S GDP 0.00000005923 0.62752 25.7919
364 5LB3 ADP 0.00006079 0.51174 27.2727
365 3EZ2 ADP 0.0001184 0.49788 27.2727
366 3TBK ANP 0.0004325 0.44757 27.2727
367 2V7Q ATP 0.000004161 0.52754 28
368 2V7Q ADP 0.0001107 0.49246 28
369 2CK3 ANP 0.0001927 0.43221 28
370 2CK3 ADP 0.0001841 0.40951 28
371 2WKQ GTP 0.00000000249 0.57054 28.0543
372 4ZI2 GNP 0.00000000006212 0.63063 28.4211
373 4GOJ GNP 0.0000000000871 0.80804 28.5714
374 2QTV GNP 0.000000006732 0.72233 28.7425
375 2GJ8 ALF GDP 0.0000000004548 0.55537 29.0698
376 2J0V GDP 0.0000000006242 0.742 29.2453
377 1FZQ GDP 0.00000000001553 0.81188 29.2818
378 5JCP GDP ALF 0.000000009664 0.60953 29.4118
379 1YZG GDP 0.000000001183 0.72896 29.6089
380 2IS6 ADP 0.00003657 0.51489 30.303
381 1ZJ6 G3D 0.0000000004335 0.71967 30.4813
382 3T1O GDP 0.00000001069 0.68827 30.8081
383 3T12 GDP ALF 0.00000001286 0.56658 30.8081
384 3REF GDP 0.00000001202 0.56301 30.9278
385 1GWN GTP 0.00000007419 0.66229 31.2195
386 3T5G GDP 0.00000000009505 0.78526 31.4917
387 1RYH GNP 0.02887 0.40128 32.0197
388 4BAS GNP 0.000000034 0.68184 32.1608
389 1XTQ GDP 0.000000000386 0.78004 32.2034
390 1DS6 GDP 0.0000000001847 0.76176 32.8125
391 1E96 GTP 0.00000000279 0.54496 32.8125
392 1I4D GDP 0.0000000001935 0.77481 33.3333
393 5IRN ADP 0.000003482 0.51592 33.3333
394 2W2X GSP 0.000000005344 0.71763 33.5135
395 1OW3 GDP 0.000000008776 0.70013 33.6788
396 4V0K GDP 0.000000002222 0.56134 33.7278
397 2GCN GDP 0.000000003333 0.73097 33.8308
398 2GCO GNP 0.00000000317 0.72131 33.8308
399 1NF3 GNP 0.000000006222 0.53529 33.8462
400 5DI3 GNP 0.0000000003642 0.61221 34.0541
401 1A4R GNH 0.000000001723 0.73399 34.555
402 1A4R GDP 0.00000000258 0.72936 34.555
403 4D0N GDP 0.0000000002038 0.75977 34.5946
404 1CXZ GSP 0.00000002679 0.68689 34.6154
405 1M7B GTP 0.00000002871 0.56288 34.7826
406 2NGR GDP 0.000000001083 0.73076 35.0785
407 4ITR GDP 0.000000003226 0.72469 35.0785
408 1GRN GDP 0.000000004056 0.62063 35.0785
409 1GRN AF3 0.007263 0.4171 35.0785
410 5HPY GDP 0.000000003956 0.71671 35.1351
411 3LXR GDP 0.000000000444 0.69771 35.1351
412 2WMO GTP 0.000000004086 0.65638 35.2632
413 1G4U GDP 0.000000002692 0.61067 35.3261
414 4XOI GTP 0.00000002016 0.53619 35.5556
415 2FJU GSP 0.0000000008367 0.75664 35.9551
416 4XSH GSP 0.000000004331 0.60612 36.3129
417 5E5U MLI 0.003179 0.43117 36.3636
418 1KMQ GNP 0.000000008765 0.71367 36.413
419 4YC7 GNP 0.000000002597 0.73624 36.4641
420 5IRC GDP 0.00000004466 0.65892 36.5591
421 1MH1 GNP 0.000000002175 0.53688 36.5591
422 1TX4 ALF GDP 0.0000000223 0.54568 36.7232
423 4DID GDP 0.000000001012 0.70308 37.3057
424 1HE1 GDP 0.000000001032 0.60816 37.5
425 1HE1 AF3 0.005858 0.42171 37.5
426 3SBD GNP 0.000000007452 0.53555 37.9679
427 1R4A GNP 0.0000000001438 0.80448 38.7879
428 1ZD9 GDP 0.0000000009199 0.62991 38.8298
429 5EE5 GTP 0.0000000001503 0.6238 39.1813
430 2G77 GDP 0.00000000005259 0.68855 39.899
431 2G77 AF3 0.01849 0.401 39.899
432 4DKX GDP 0.00000000002469 0.80249 41.2037
433 2BCG GDP 0.00000000000251 0.71602 41.7476
434 4DSU GDP 0.00000000003555 0.84108 41.7989
435 4U5X GNP 0.000000003829 0.7211 42.1348
436 2F9L GDP 0.0000000001332 0.61355 42.2111
437 1OIX GDP 0.0000000002678 0.79444 42.4084
438 3CPJ GDP 0.000000000003785 0.85651 42.5339
439 5UQW GDP 0.00000000005148 0.60387 42.8571
440 1OIV GDP 0.00000000009804 0.816 42.9319
441 5TB5 GDP 0.000000000007113 0.76923 43.2432
442 5TAR GDP 0.00000000000561 0.7474 43.2432
443 5SZH GNP 0.0000000000233 0.85019 43.3498
444 2ZEJ GDP 0.0000000009368 0.77058 44.0217
445 2CJW GDP 0.000000000008837 0.82329 44.2708
446 2A9K GDP 0.00000000004957 0.8078 44.385
447 5JCZ GDP 0.0000000004218 0.63558 45.2514
448 1Z06 GNP 0.00000000001432 0.61691 45.5026
449 3BC1 GNP 0.0000000000392 0.83567 45.641
450 2EW1 GNP 0.00000000002154 0.84138 45.7711
451 1VG0 GDP 0.000000000002294 0.86686 45.8937
452 1VG8 GNP 0.00000000003314 0.84259 45.8937
453 3Q85 GNP 0.000000000002071 0.85266 46.1538
454 5XCO GDP 0.00000000001401 0.82945 46.1988
455 4LX0 BEF GDP 0.0000000003755 0.79028 46.3277
456 3RWO GDP 0.0000000003098 0.79132 46.4865
457 1YZN GNP 0.0000000001788 0.56755 46.4865
458 2HV8 GTP 0.0000000002081 0.79985 46.5116
459 2A5J GDP 0.000000000001283 0.80066 46.5969
460 4K81 GTP 0.0000000001971 0.80721 46.7836
461 2C5L GTP 0.0000000001033 0.8181 46.8208
462 1ZC3 GNP 0.00000000006896 0.8268 46.8571
463 2D7C GTP 0.0000000004756 0.78212 47.3054
464 5O2T GSP 0.0000000001521 0.56872 47.3373
465 1UAD GNP 0.0000000001655 0.80476 47.4286
466 3Q72 GNP 0.00000000009055 0.75673 47.5904
467 5UFQ GNP 0.000000000167 0.58051 47.5904
468 1NVU GTP 0.00000000002774 0.84642 48.1928
469 2UZI GTP 0.0000000002662 0.79457 48.1928
470 1CLU DBG 0.000000001504 0.44045 48.1928
471 5E95 GDP 0.000000000008713 0.71744 48.2143
472 1G16 GDP 0.00000000004036 0.82431 48.2353
473 1X1R GDP 0.00000000005342 0.8323 48.3146
474 3TKL GTP 0.00000000005236 0.60695 48.4694
475 1LFD GNP 0.00000000002857 0.84246 48.503
476 4C4P GNP 0.0000000001358 0.81219 48.5549
477 1NVV GNP 0.00000000002415 0.84941 48.7952
478 3KUD GDP 0.00000000003133 0.66027 48.7952
479 1WQ1 GDP 0.00000000005967 0.61913 48.7952
480 1WQ1 AF3 0.002204 0.45257 48.7952
481 1U8Z GDP 0.00000000008512 0.61885 48.8095
482 1Z0J GTP 0.0000000003579 0.56405 48.8235
483 1KY3 GDP 0.00000000004315 0.80621 48.9011
484 1YVD GNP 0.00000000009063 0.58935 49.1124
485 3DDC GNP 0.00000000003838 0.58456 49.3976
486 2HT6 GDP 0.00000000000469 0.81291 49.4253
487 2FFQ GSP 0.0000000006043 0.78003 49.7076
488 1Z0A GDP 0.000000000003565 0.85269 50
489 3TNF GNP 0.00000000005915 0.83326 50
490 4KVG GTP 0.00000000009313 0.8171 50
491 3QBT GNP 0.00000000002283 0.60117 50
492 4LHW GNP 0.00000000007194 0.58948 50
Pocket No.: 2; Query (leader) PDB : 3GJ4; Ligand: GDP; Similar sites found: 13
This union binding pocket(no: 2) in the query (biounit: 3gj4.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4M7V RAR 0.02499 0.4162 1.14286
2 1NV8 SAM 0.02016 0.40543 2.71493
3 1NV8 MEQ 0.0221 0.40347 2.71493
4 2F5X ASP 0.01344 0.40941 2.88462
5 2ZW5 COA 0.01799 0.40073 4.97738
6 1BO4 COA 0.006538 0.41229 5.35714
7 5AHO TLA 0.01473 0.40732 5.88235
8 1FQK ALF 0.004323 0.43461 10.8844
9 1FQJ ALF 0.005054 0.43098 10.8844
10 4OI4 ATP 0.0004042 0.40164 15.1515
11 4AF0 IMP 0.01838 0.40029 15.1515
12 5T67 JHZ 0.03871 0.4079 18.1818
13 1G4U AF3 0.01716 0.40343 35.3261
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