Receptor
PDB id Resolution Class Description Source Keywords
3GJ5 1.79 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF4 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
C:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ5 1.79 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF4 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 171 families.
1 3CH5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3GJ3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ5; Ligand: GDP; Similar sites found: 483
This union binding pocket(no: 1) in the query (biounit: 3gj5.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4D81 ADP 0.00005537 0.50872 None
2 4M7V RAR 0.03625 0.4078 1.14286
3 4M7V NAP 0.02365 0.40566 1.14286
4 3DKP ADP 0.0001379 0.49105 1.80995
5 2X7I CIT 0.00635 0.41289 1.80995
6 1BG2 ADP 0.0000002297 0.51211 2.26244
7 4R43 GDP 0.00007108 0.50457 2.26244
8 2FNA ADP 0.0000256 0.44889 2.26244
9 5WRJ A3P 0.002903 0.44047 2.26244
10 5WRI A3P 0.003452 0.43336 2.26244
11 2ZJ5 ADP 0.01128 0.41291 2.26244
12 1GOJ ADP 0.00000008266 0.69096 2.71493
13 3DC4 ADP 0.000002525 0.59096 2.71493
14 3BFV ADP 0.00001686 0.53391 2.71493
15 5K5Z ANP 0.00008736 0.51353 2.71493
16 2Y65 ADP 0.0000008105 0.51264 2.71493
17 2VB6 ADP BEF 0.000121 0.50469 2.71493
18 4PFO ADP 0.0001567 0.5033 2.71493
19 3ZS9 ADP ALF 0.00001926 0.43277 2.71493
20 2WOJ ADP ALF 0.00001806 0.43248 2.71493
21 2ZPT A3P 0.04425 0.40919 2.71493
22 1NV8 SAM 0.02113 0.40443 2.71493
23 1NV8 MEQ 0.02298 0.40263 2.71493
24 2F5X ASP 0.01751 0.40049 2.88462
25 4J0Q GDP 0.00000000009472 0.79484 3.16742
26 4AG5 ADP 0.000003709 0.59117 3.16742
27 5J1J ANP 0.000007848 0.56144 3.16742
28 4V03 ADP 0.000006984 0.54736 3.16742
29 2ZR9 DTP 0.0000421 0.51524 3.16742
30 5I0H ADP BEF 0.0000634 0.51359 3.16742
31 5I34 GDP 0.00004381 0.50757 3.16742
32 2ZPA ADP 0.00007791 0.50697 3.16742
33 3FKQ ATP 0.000007343 0.50493 3.16742
34 4IOK XPO 0.0003541 0.48435 3.16742
35 4IOK ADP 0.0004622 0.48411 3.16742
36 1NHX FTB 0.009617 0.43673 3.16742
37 1NHX PEP 0.009479 0.43613 3.16742
38 1AQU A3P 0.009359 0.40721 3.16742
39 1SVI GDP 0.000000001118 0.68398 3.58974
40 2Q2Y ADP 0.0001216 0.52898 3.61991
41 2Q2Y MKR 0.0001312 0.52601 3.61991
42 3P4X ADP 0.0000132 0.50898 3.61991
43 3QF7 ANP 0.0002158 0.48617 3.61991
44 5LB3 ADP 0.00007987 0.47795 3.61991
45 2D7D ADP 0.0005686 0.44861 3.61991
46 4P32 ADP 0.0001393 0.42174 3.61991
47 5T67 JHZ 0.03446 0.41055 3.61991
48 1JJV ATP 0.00002238 0.54838 3.8835
49 3TK1 GDP 0.00000000001159 0.85542 4.0724
50 3WY9 GDP 0.00000000003047 0.81858 4.0724
51 3WYA GDP 0.0000000001325 0.77361 4.0724
52 2RCN GDP 0.00000000003727 0.76589 4.0724
53 3WXM GTP 0.0000000006267 0.76365 4.0724
54 3VMF GTP 0.0000000006672 0.76234 4.0724
55 2C77 GNP 0.000000001384 0.73391 4.0724
56 2C78 GNP 0.0000000004019 0.62461 4.0724
57 4WZ6 ATP 0.000009586 0.56984 4.0724
58 1JI0 ATP 0.000006851 0.56948 4.0724
59 4LYA ATP 0.000007178 0.54353 4.0724
60 5G41 AP5 0.0006476 0.4978 4.0724
61 2C04 GCP 0.00001581 0.49623 4.0724
62 1XP8 AGS 0.0001774 0.49246 4.0724
63 2FAH GDP 0.0003228 0.47317 4.0724
64 1QF5 RPL 0.008888 0.47021 4.0724
65 4FCW ADP 0.0003653 0.46539 4.0724
66 4LJ9 ACP 0.0006792 0.45853 4.0724
67 3BER AMP 0.00238 0.43294 4.0724
68 2D2F ADP 0.00005472 0.42061 4.0724
69 1BXG NAD 0.01439 0.41131 4.0724
70 5MEX SZZ 0.03708 0.40106 4.0724
71 4MKF AP5 0.0004575 0.50106 4.14747
72 3FB4 AP5 0.0003107 0.50837 4.16667
73 1XX6 ADP 0.0004436 0.45172 4.18848
74 4QRH 0O2 0.004241 0.42726 4.28571
75 2F3R G5P 0.0058 0.43602 4.34783
76 3KTA AP5 0.000127 0.46252 4.3956
77 4LC1 GDP 0.0000000001271 0.77446 4.52489
78 3B5J 12D 0.00000593 0.57259 4.52489
79 3KJI ADP 0.00000559 0.55495 4.52489
80 2OBM ADP 0.0001753 0.50802 4.52489
81 3EWA ANP 0.00003133 0.50277 4.52489
82 1R6B ADP 0.00009142 0.49294 4.52489
83 1R0X ATP 0.00013 0.46788 4.52489
84 2C9O ADP 0.00004068 0.4534 4.52489
85 4KBF AMP 0.0009575 0.43171 4.52489
86 4CVN ADP 0.00000547 0.57433 4.71204
87 1G6H ADP 0.0000002142 0.67652 4.97738
88 2CBZ ATP 0.0000005006 0.65166 4.97738
89 1YQT ADP 0.000003479 0.59281 4.97738
90 3A4M ADP 0.000003426 0.58439 4.97738
91 4RZ3 ADP 0.000008239 0.55005 4.97738
92 2QEN ADP 0.00003056 0.52345 4.97738
93 2OZE AGS 0.00004021 0.52047 4.97738
94 2IS6 ADP 0.00004086 0.51585 4.97738
95 4HSE ADP 0.00004719 0.50609 4.97738
96 1OFH ADP 0.0001327 0.48839 4.97738
97 1G41 ADP 0.00006311 0.48826 4.97738
98 1IHU AF3 0.000003513 0.48399 4.97738
99 4IHQ ADP 0.00007318 0.47625 4.97738
100 1IHU ADP 0.000003966 0.47289 4.97738
101 1NST A3P 0.005604 0.41765 4.97738
102 2J5V PCA 0.02676 0.41113 4.97738
103 2ZW5 COA 0.01663 0.40238 4.97738
104 4MKG AP5 0.0004209 0.50171 5.06912
105 5BQ5 ADP BEF 0.00009016 0.48129 5.29101
106 1BO4 COA 0.005581 0.41553 5.35714
107 3MD0 GDP 0.00000000009536 0.7947 5.42986
108 3LRE ADP 0.0000003009 0.66025 5.42986
109 4IDN GNP 0.0002654 0.41696 5.42986
110 4YS0 ADP 0.0009502 0.41647 5.42986
111 2W58 ADP 0.0000007208 0.64567 5.44554
112 1VHT BA3 0.0002642 0.46296 5.50459
113 4KFU ACP 0.000001755 0.51689 5.66038
114 4R2I ANP 0.0003359 0.44622 5.71429
115 1WF3 GNP 0.000000001672 0.74605 5.88235
116 3E70 GDP 0.000000556 0.5944 5.88235
117 1V8K ANP 0.00000839 0.54814 5.88235
118 4P4T GDP 0.0000004848 0.54097 5.88235
119 3COB ADP 0.0000001522 0.53828 5.88235
120 3H4S ADP 0.0000002123 0.53202 5.88235
121 4FRZ ADP 0.0000007186 0.53102 5.88235
122 2PEZ GGZ 0.00008027 0.52796 5.88235
123 2PEZ DAT 0.00008027 0.52796 5.88235
124 4H1V GNP 0.000003188 0.52282 5.88235
125 2OFW ADX 0.0001578 0.52196 5.88235
126 2DPY ADP 0.0001107 0.50963 5.88235
127 3QKT ANP 0.0001143 0.50793 5.88235
128 5X40 ACP 0.0001515 0.50003 5.88235
129 2PZE ATP 0.000001607 0.49776 5.88235
130 4WOP CTP 0.0008286 0.46082 5.88235
131 1FNN ADP 0.00005101 0.45762 5.88235
132 3T34 GDP 0.00002115 0.45587 5.88235
133 3IUY AMP 0.002524 0.42084 5.88235
134 3QXC ATP 0.0002069 0.40474 5.88235
135 1UKZ ADP 0.0002851 0.50223 5.91133
136 1Y63 ADP 0.000001434 0.58417 5.97826
137 1NN5 ANP 0.0001869 0.50825 6.04651
138 1NN5 2DT 0.02825 0.42599 6.04651
139 2XTZ GSP 0.000000001472 0.74577 6.33484
140 5IFS ADP 0.00003709 0.51392 6.33484
141 2PL3 ADP 0.0001436 0.49688 6.33484
142 4PX9 ADP 0.00003652 0.49032 6.33484
143 1P9B GDP 0.00006509 0.46867 6.33484
144 3Q9L ATP 0.0001292 0.45492 6.33484
145 1OE0 TTP 0.002259 0.449 6.33484
146 2FH5 GTP 0.0000000004771 0.63427 6.54206
147 1GXU 2HP 0.0002101 0.49086 6.59341
148 4Q1A UDP 0.0008513 0.53944 6.78571
149 4Q1A 2XZ 0.0008513 0.53944 6.78571
150 3EC1 GDP 0.0000000001333 0.76014 6.78733
151 3CNL GNP 0.000000001047 0.74453 6.78733
152 1TAD ALF 0.000000003629 0.73519 6.78733
153 1TAD GDP 0.000000003629 0.73519 6.78733
154 5L3V GDP 0.0000005969 0.59662 6.78733
155 3FWY ADP 0.000001943 0.57937 6.78733
156 1JWY GDP 0.000001156 0.55179 6.78733
157 2ZFI ADP 0.00001052 0.54353 6.78733
158 1XKV ATP 0.00003686 0.51404 6.78733
159 5LTJ ADP 0.00003692 0.51097 6.78733
160 1CR1 TTP 0.0001489 0.49606 6.78733
161 1JWY ADP 0.00008257 0.49496 6.78733
162 4ZNL BEF ADP 0.0001772 0.47977 6.78733
163 5MZN ADP 0.000444 0.47973 6.78733
164 5VGR GDP 0.0002588 0.44183 6.78733
165 4GOX A3P 0.0002709 0.41014 6.78733
166 5MVR ADP 0.00001174 0.52332 6.79012
167 4TTQ ATP 0.000024 0.52671 6.97674
168 1ZUI SKM 0.00008908 0.53029 7.14286
169 5H56 ADP 0.00003712 0.54108 7.17949
170 5H56 TYD 0.00003712 0.54108 7.17949
171 1W0J ADP 0.00001527 0.53469 7.23982
172 2CE7 ADP 0.00003329 0.51608 7.23982
173 1W0J ADP BEF 0.0003291 0.47756 7.23982
174 3TBK ANP 0.0005578 0.43279 7.23982
175 2FSH ANP 0.0009946 0.43032 7.23982
176 2B8T THM 0.007055 0.41857 7.23982
177 3H86 AP5 0.000281 0.50398 7.29167
178 3W5J GDP 0.0000002204 0.65593 7.35294
179 4BQS ADP 0.000009912 0.54474 7.38636
180 4BQS K2Q 0.00008891 0.53034 7.38636
181 3AB3 GDP 0.00000000413 0.71146 7.69231
182 1ZCB GDP 0.00000001957 0.69157 7.69231
183 3B9Q MLI 0.00001561 0.56479 7.69231
184 3CX8 GSP 0.000000003905 0.53093 7.69231
185 2BIF ANP 0.0003317 0.49897 7.69231
186 2BIF SIN 0.0005577 0.49897 7.69231
187 3VX3 ADP 0.00001024 0.48723 7.69231
188 5L3R GCP 0.000001964 0.47841 7.69231
189 3UIE ANP 0.00001475 0.51446 8
190 2HF9 GSP 0.0000001089 0.58192 8.1448
191 1CS4 GSP 0.000000004953 0.5378 8.1448
192 1AZT GSP 0.000000003721 0.53114 8.1448
193 5IRR GSP 0.00000179 0.49593 8.1448
194 1XMV ADP 0.00007959 0.49569 8.1448
195 2VF7 ADP 0.0001325 0.48555 8.59729
196 3PQC GDP 0.000000019 0.64103 8.71795
197 1YRB GDP 0.000000000002403 0.78078 8.82353
198 2GK6 ADP 0.0005525 0.47502 8.82353
199 4TMK T5A 0.007067 0.433 8.82353
200 2IXE ATP 0.00008424 0.43062 8.82353
201 2ODE ALF GDP 0.000000004141 0.73239 9.04977
202 4NON GDP 0.000000009006 0.52295 9.04977
203 1YTM ATP 0.0001119 0.44216 9.04977
204 4LPS GDP 0.00000009457 0.62962 9.50226
205 1G3Q ADP 0.000007353 0.54306 9.50226
206 1ION ADP 0.00001322 0.53458 9.50226
207 1B0U ATP 0.00005423 0.4766 9.50226
208 2WJH GDP 0.00000000442 0.69053 9.63855
209 2WJH FLC 0.00000163 0.5765 9.63855
210 1SVK ALF GDP 0.000000004701 0.73226 9.95475
211 2WHX ADP 0.00001496 0.56018 9.95475
212 1BH2 GSP 0.00000001562 0.51545 9.95475
213 2JLR ANP 0.000188 0.48406 9.95475
214 3U6B GDP 0.00000000002372 0.82382 10.4072
215 4G5G GDP 0.00000000009796 0.77977 10.4072
216 3U6K GDP 0.0000000003248 0.75532 10.4072
217 1D8T GDP 0.00000000007503 0.75198 10.4072
218 5JBQ GDP 0.00000000009049 0.74851 10.4072
219 4P3Y GDP 0.00000000003094 0.74836 10.4072
220 2BVN GNP 0.0000000001371 0.71274 10.4072
221 2GDJ ANP 0.0001392 0.49086 10.4072
222 2WJG GDP 0.00000000268 0.71229 10.6383
223 1M7G ADX 0.00001942 0.55668 11.3744
224 1M7G AV2 0.000001119 0.55359 11.3744
225 1M7G ADP 0.00002402 0.54851 11.3744
226 2VOH CIT 0.004363 0.4093 11.465
227 2AWN ADP 0.00000006666 0.71795 11.7647
228 2XT3 ADP 0.0000001282 0.67341 11.7647
229 2NCD ADP 0.0000009146 0.62113 11.7647
230 2IYL GDP 0.0000009792 0.59195 11.7647
231 3DEF GDP 0.0000008629 0.55483 11.7647
232 3ZFD ANP 0.00001131 0.53771 11.7647
233 2VVG ADP 0.0000001041 0.52417 11.7647
234 3EZ2 ADP 0.00006684 0.5129 11.7647
235 1KO8 6PG 0.00005853 0.51281 11.7647
236 2XAU ADP 0.00006668 0.50217 11.7647
237 1SQ5 ADP 0.00009963 0.49123 11.7647
238 4XGU ADP 0.0000537 0.47191 11.7647
239 4A4Z ANP 0.004544 0.41973 11.7647
240 3RLF ANP 0.0001424 0.41551 11.7647
241 5H67 ATP 0.00216 0.43003 12.0603
242 1H65 GDP 0.000002219 0.49464 12.2172
243 1NRJ GTP 0.00000001404 0.68634 12.6582
244 5HCN GCP 0.00000000009804 0.76626 12.6697
245 1T5C ADP 0.0000005146 0.50071 12.6697
246 1TQ4 GDP 0.000000001201 0.62168 13.5747
247 4E03 ADP 0.000007281 0.54325 14.0777
248 4ZKD GDP 0.0000000007549 0.76278 14.7059
249 5CK5 GDP 0.00000000005479 0.7379 14.7059
250 5GOE GDP 0.000000003352 0.67461 14.7059
251 4TMZ GSP 0.0000000002247 0.61551 14.7059
252 3NHB ADP 0.000003348 0.59404 14.7059
253 1FQJ GDP 0.000000005047 0.57569 14.7059
254 1FQK GDP 0.0000000285 0.55471 14.7059
255 1LVG ADP 0.0000004826 0.55268 14.7059
256 5IRN ADP 0.000006574 0.55168 14.7059
257 1F9V ADP 0.0000005068 0.53707 14.7059
258 4YMU ATP 0.000005432 0.5229 14.7059
259 5TSH ANP 0.00001333 0.5196 14.7059
260 1UJ2 C5P 0.0001211 0.5106 14.7059
261 4U00 ADP 0.0000001985 0.50969 14.7059
262 1OXV ANP 0.00001403 0.50465 14.7059
263 5XDR ADP 0.00007751 0.49622 14.7059
264 1UJ2 ADP 0.000265 0.49411 14.7059
265 1G6O ADP 0.00004702 0.49254 14.7059
266 5TSH ADP 0.000009401 0.49017 14.7059
267 5M7P ADP 0.0003233 0.47792 14.7059
268 1FQK ALF 0.00433 0.43453 14.7059
269 3FVQ ATP 0.0001527 0.43026 14.7059
270 1FQJ ALF 0.005308 0.42981 14.7059
271 1QHH ATP 0.004284 0.4164 14.7059
272 1QHG ATP 0.0025 0.41111 14.7059
273 1L2T ATP 0.0001367 0.40839 14.7059
274 1ME8 RVP 0.03121 0.40489 14.7059
275 1OJ4 ANP 0.0111 0.40373 14.7059
276 2OM2 GDP 0.00000001834 0.58532 15.3846
277 1Y3A GDP 0.00000001495 0.56351 15.3846
278 4YDS ATP 0.00001097 0.55935 16.2896
279 2ZTS ADP 0.00008931 0.44724 17.1315
280 1WDT GTP 0.00000004849 0.57913 17.1946
281 5M04 GDP 0.000000000005206 0.77913 17.6471
282 5KSP GDP 0.000001253 0.57824 17.6471
283 5KDO GDP 0.00000003525 0.57592 17.6471
284 1GOT GDP 0.00000002511 0.56796 17.6471
285 5KSZ GCP 0.000002567 0.5674 17.6471
286 4HI0 GDP 0.00000006014 0.56378 17.6471
287 3ZQ6 ADP ALF 0.00001196 0.5593 17.6471
288 1GP2 GDP 0.00000003194 0.55329 17.6471
289 3IO3 ADP 0.00001121 0.54654 17.6471
290 4QM7 GTP 0.00001203 0.52109 17.6471
291 1RRC ADP 0.000001051 0.5041 17.6471
292 2QZ4 ADP 0.00005013 0.49212 17.6471
293 5GJC ATP 0.0000801 0.48503 17.6471
294 2B8W ALF 5GP 0.0003743 0.4832 17.6471
295 3B7G ANP 0.0002038 0.47699 17.6471
296 3RC3 ANP 0.001707 0.44504 17.6471
297 1OYY AGS 0.004447 0.42017 17.6471
298 5J1S ATP 0.0001775 0.41499 17.6471
299 3IIJ ADP 0.000004148 0.54225 18.8889
300 5HR5 ADP 0.0001298 0.4941 19.0045
301 2X77 GDP 0.0000000002202 0.75017 19.5767
302 1NJF ADP 0.00003057 0.52606 20.5882
303 1NJF AGS 0.0000589 0.51741 20.5882
304 2XTN GTP 0.000001262 0.49675 20.5882
305 1W7J ADP BEF 0.00007572 0.46078 20.5882
306 1Z6T ADP 0.00008774 0.4583 20.5882
307 2ZE7 DST 0.00403 0.4368 20.5882
308 2ZE7 AMP 0.003741 0.4368 20.5882
309 4OI4 ATP 0.0004183 0.40134 20.5882
310 4M9Q GNP 0.0000000001009 0.64287 20.8145
311 3DOE GTP 0.00000000009913 0.62734 20.8333
312 2KIN ADP 0.000000202 0.51347 21
313 1UPT GTP 0.000000000253 0.77248 21.0526
314 3AQ4 GDP 0.0000000002905 0.74466 21.1957
315 1KSH GDP 0.00000000003063 0.81214 21.5054
316 1F6B GDP 0.000000001001 0.72005 21.7172
317 1MKY GDP 0.00000000005179 0.75903 21.7195
318 1MR3 G3D 0.00000000005756 0.77684 22.0994
319 1HTW ADP 0.000008883 0.5393 22.1519
320 1O3Y GTP 0.0000000001629 0.6216 22.2892
321 2J59 GTP 0.000000000158 0.62159 22.2892
322 1J2J GTP 0.0000000003686 0.61059 22.2892
323 4YLG GDP 0.000000000234 0.76247 22.5434
324 2WIC GNP 0.000000009089 0.67619 23.0769
325 4R98 GNH 0.00000002617 0.64226 23.0769
326 1RE0 GDP 0.00000000002322 0.75355 23.1707
327 1S9D GDP 0.0000000003673 0.73999 23.1707
328 4PPF FLC 0.000001195 0.63316 23.5294
329 5L3S GNP 0.000001691 0.59577 23.5294
330 5L3W GDP 0.000001578 0.57715 23.5294
331 4PJ3 ANP 0.001103 0.42633 23.5294
332 4ITM ATP 0.007445 0.42235 23.5294
333 3R96 AMP 0.03472 0.40349 23.5294
334 3R96 ACO 0.03472 0.40349 23.5294
335 4KAX GTP 0.0000000002581 0.77206 23.6686
336 2A5F GTP 0.000000000809 0.75516 24
337 4DCT GDP 0.0000000001506 0.75772 24.4344
338 3PCR GTP 0.000000000546 0.60596 24.6914
339 1M2O GNP 0.00000000425 0.72355 25.2632
340 3N5C GDP 0.0000000002243 0.76288 25.3086
341 2W83 GTP 0.0000000002788 0.6154 25.4545
342 3A1S GDP 0.0000002343 0.61158 25.7919
343 1PUJ GNP 0.000000002785 0.70827 26.4706
344 4PC3 GDP 0.000000003812 0.70194 26.4706
345 4WZA ACP 0.00003292 0.57798 26.4706
346 4WZA ADP 0.00003292 0.57798 26.4706
347 1FP6 ADP 0.000006916 0.51666 26.4706
348 4ZG4 VO4 ADP 0.00008692 0.51155 26.4706
349 5N69 ADP 0.00007815 0.50177 26.4706
350 1B7T ADP 0.0001639 0.46975 26.4706
351 4JLV ADP 0.0001925 0.46218 26.4706
352 1KK8 BEF ADP 0.00007344 0.46171 26.4706
353 1K6M AGS 0.0001985 0.41079 26.4706
354 2V7Q ATP 0.000009951 0.52267 28
355 2V7Q ADP 0.0001557 0.48857 28
356 2CK3 ANP 0.0003683 0.42881 28
357 2CK3 ADP 0.0003508 0.4069 28
358 2WKQ GTP 0.000000008414 0.5654 28.0543
359 4ZI2 GNP 0.00000000002271 0.82223 28.4211
360 4GOJ GNP 0.00000000002783 0.81804 28.5714
361 2QTV GNP 0.000000003026 0.72766 28.7425
362 2GJ8 ALF GDP 0.0000000005383 0.56404 29.0698
363 2J0V GDP 0.00000000199 0.7064 29.2453
364 1FZQ GDP 0.000000000007932 0.83103 29.2818
365 1JJ7 ADP 0.0000001743 0.68195 29.4118
366 5JCP GDP ALF 0.000000007889 0.62683 29.4118
367 5FTB ANP 0.00006669 0.48711 29.4118
368 5FHD ADP ALF 0.00003115 0.45539 29.4118
369 1YZG GDP 0.000000001083 0.71848 29.6089
370 1ZJ6 G3D 0.0000000004891 0.7343 30.4813
371 3T1O GDP 0.000000007185 0.68513 30.8081
372 3T12 GDP ALF 0.000000003055 0.5983 30.8081
373 3REF GDP 0.000000014 0.57021 30.9278
374 1GWN GTP 0.0000001708 0.63505 31.2195
375 3T5G GDP 0.0000000002254 0.75446 31.4917
376 1RYH GNP 0.000000001168 0.72151 32.0197
377 4BAS GNP 0.000000008146 0.70082 32.1608
378 1XTQ GDP 0.000000000819 0.75164 32.2034
379 5KUT GDP 0.00000001923 0.66129 32.3529
380 2OG2 MLI 0.000005119 0.59013 32.3529
381 1DS6 GDP 0.0000000003655 0.72183 32.8125
382 1E96 GTP 0.00000000327 0.557 32.8125
383 1I4D GDP 0.0000000004107 0.76413 33.3333
384 2W2X GSP 0.00000001807 0.68116 33.5135
385 1OW3 GDP 0.00000002343 0.669 33.6788
386 4V0K GDP 0.000000002157 0.573 33.7278
387 2GCO GNP 0.000000003012 0.71063 33.8308
388 2GCN GDP 0.000000008387 0.70022 33.8308
389 1NF3 GNP 0.000000007513 0.54606 33.8462
390 5DI3 GNP 0.0000000003729 0.62374 34.0541
391 1A4R GNH 0.000000004448 0.63305 34.555
392 1A4R GDP 0.00000000549 0.61357 34.555
393 4D0N GDP 0.0000000002706 0.72856 34.5946
394 1CXZ GSP 0.00000002221 0.68012 34.6154
395 1M7B GTP 0.00000007589 0.55857 34.7826
396 2NGR GDP 0.000000004026 0.69238 35.0785
397 4ITR GDP 0.000000009674 0.69055 35.0785
398 1GRN GDP 0.00000001219 0.61538 35.0785
399 1GRN AF3 0.003848 0.43323 35.0785
400 2NGR AF3 0.003356 0.40053 35.0785
401 3LXR GDP 0.000000001576 0.68926 35.1351
402 5HPY GDP 0.00000001162 0.68324 35.1351
403 2WMO GTP 0.000000003837 0.67218 35.2632
404 4XTR ATP 0.00001833 0.54385 35.2941
405 4XVU ATP 0.00001983 0.54222 35.2941
406 4XTR ADP 0.00001409 0.54188 35.2941
407 3ZIA ADP 0.0000304 0.5208 35.2941
408 3ZIA ATP 0.00002819 0.51633 35.2941
409 1G4U GDP 0.00000001007 0.60347 35.3261
410 1G4U AF3 0.01234 0.41196 35.3261
411 4XOI GTP 0.00000002314 0.68524 35.5556
412 2FJU GSP 0.000000001398 0.73369 35.9551
413 4XSH GSP 0.000000005325 0.70274 36.3129
414 1KMQ GNP 0.000000009615 0.70054 36.413
415 4YC7 GNP 0.000000008217 0.70064 36.4641
416 1MH1 GNP 0.000000002153 0.74073 36.5591
417 5IRC GDP 0.0000001152 0.62956 36.5591
418 1TX4 ALF GDP 0.00000002589 0.5565 36.7232
419 4DID GDP 0.000000003459 0.69541 37.3057
420 1HE1 GDP 0.000000004113 0.60108 37.5
421 1HE1 AF3 0.002943 0.43901 37.5
422 3SBD GNP 0.000000009816 0.54439 37.9679
423 1R4A GNP 0.0000000001901 0.60341 38.7879
424 1ZD9 GDP 0.000000001605 0.63334 38.8298
425 5EE5 GTP 0.00000000004292 0.8091 39.1813
426 2G77 GDP 0.0000000001315 0.69019 39.899
427 2G77 AF3 0.01854 0.40328 39.899
428 4DKX GDP 0.00000000002839 0.80503 41.2037
429 2BCG GDP 0.000000000008707 0.71441 41.7476
430 4DSU GDP 0.0000000000955 0.80628 41.7989
431 4U5X GNP 0.000000004815 0.7048 42.1348
432 2F9L GDP 0.0000000002329 0.61726 42.2111
433 1OIX GDP 0.0000000005455 0.76655 42.4084
434 3CPJ GDP 0.00000000001437 0.81446 42.5339
435 5UQW GDP 0.0000000001528 0.7899 42.8571
436 1OIV GDP 0.0000000002579 0.78225 42.9319
437 5TB5 GDP 0.00000000002173 0.80131 43.2432
438 5TAR GDP 0.00000000001689 0.74766 43.2432
439 5SZH GNP 0.00000000002955 0.83096 43.3498
440 2ZEJ GDP 0.000000001565 0.74744 44.0217
441 2CJW GDP 0.000000000008455 0.82973 44.2708
442 2A9K GDP 0.000000000127 0.77487 44.385
443 5JCZ GDP 0.0000000008693 0.63852 45.2514
444 1Z06 GNP 0.00000000002234 0.62891 45.5026
445 3BC1 GNP 0.0000000001107 0.79996 45.641
446 2EW1 GNP 0.00000000003518 0.81694 45.7711
447 1VG8 GNP 0.00000000002913 0.83126 45.8937
448 1VG0 GDP 0.000000000006524 0.83038 45.8937
449 3Q85 GNP 0.000000000001393 0.82688 46.1538
450 5XCO GDP 0.0000000000569 0.78672 46.1988
451 4LX0 BEF GDP 0.0000000002342 0.7874 46.3277
452 3RWO GDP 0.0000000005767 0.76539 46.4865
453 1YZN GNP 0.0000000001755 0.58171 46.4865
454 2HV8 GTP 0.0000000005338 0.76701 46.5116
455 2A5J GDP 0.000000000003891 0.80122 46.5969
456 4K81 GTP 0.0000000007624 0.76549 46.7836
457 2C5L GTP 0.0000000001306 0.5851 46.8208
458 1ZC3 GNP 0.0000000001904 0.79176 46.8571
459 2D7C GTP 0.0000000009349 0.75527 47.3054
460 5O2T GSP 0.0000000001807 0.5812 47.3373
461 1UAD GNP 0.0000000004102 0.77253 47.4286
462 5UFQ GNP 0.0000000003817 0.77404 47.5904
463 3Q72 GNP 0.00000000009497 0.7297 47.5904
464 1NVU GTP 0.00000000005757 0.81693 48.1928
465 1CLU DBG 0.000000003022 0.76565 48.1928
466 2UZI GTP 0.0000000006184 0.76393 48.1928
467 5E95 GDP 0.00000000003446 0.71287 48.2143
468 1G16 GDP 0.00000000005588 0.80365 48.2353
469 1X1R GDP 0.0000000001362 0.58113 48.3146
470 3TKL GTP 0.00000000009237 0.61625 48.4694
471 1LFD GNP 0.00000000003736 0.82272 48.503
472 4C4P GNP 0.0000000001021 0.80486 48.5549
473 3KUD GDP 0.0000000001002 0.65793 48.7952
474 1WQ1 GDP 0.0000000001995 0.61702 48.7952
475 1NVV GNP 0.00000000002825 0.60342 48.7952
476 1WQ1 AF3 0.001158 0.46835 48.7952
477 1U8Z GDP 0.0000000002081 0.61949 48.8095
478 1Z0J GTP 0.0000000003687 0.57608 48.8235
479 1KY3 GDP 0.0000000001167 0.77224 48.9011
480 1YVD GNP 0.0000000001293 0.59923 49.1124
481 3DDC GNP 0.00000000005358 0.59607 49.3976
482 2HT6 GDP 0.000000000002825 0.79148 49.4253
483 2FFQ GSP 0.0000000004178 0.77522 49.7076
484 3TNF GNP 0.00000000005439 0.82128 50
485 1Z0A GDP 0.000000000008414 0.82031 50
486 4KVG GTP 0.0000000002994 0.77912 50
487 3QBT GNP 0.00000000002181 0.61887 50
488 4LHW GNP 0.0000000002254 0.58797 50
Pocket No.: 2; Query (leader) PDB : 3GJ5; Ligand: GDP; Similar sites found: 12
This union binding pocket(no: 2) in the query (biounit: 3gj5.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1I0B PEL 0.008228 0.40228 1.35747
2 5K2M ADP 0.01886 0.40506 2.71493
3 2B4D COA 0.0117 0.41037 2.92398
4 2PWY SAH 0.01463 0.41053 3.16742
5 1P72 ADP 0.03887 0.42302 4.0724
6 3MWL 8OX 0.01594 0.40022 4.83092
7 3HU3 AGS 0.04584 0.44124 4.97738
8 5GVR LMR 0.00001989 0.40868 5.42986
9 5HR5 FLC 0.02707 0.40631 19.0045
10 2BFR ADP 0.01913 0.40475 23.5294
11 1J99 AND 0.02686 0.40761 35.2941
12 1T3D CYS 0.008542 0.41434 41.1765
13 4CZG ADP 0.03632 0.40297 50
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