Receptor
PDB id Resolution Class Description Source Keywords
3GJ7 1.93 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF12 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
A:304;
A:306;
C:301;
C:303;
C:305;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ7 1.93 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF12 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 185 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ7; Ligand: GDP; Similar sites found: 514
This union binding pocket(no: 1) in the query (biounit: 3gj7.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4M7V NAP 0.0268 0.40653 1.14286
2 2FNA ADP 0.00001889 0.44528 2.26244
3 5TIV A3P 0.01055 0.43782 2.26244
4 2B4D COA 0.01296 0.4082 2.92398
5 3ZQ6 ADP ALF 0.000007926 0.5757 3.06122
6 5K5Z ANP 0.00005238 0.53098 3.06122
7 4R43 GDP 0.00008963 0.49674 3.06122
8 5J1J ANP 0.000004783 0.57971 3.16742
9 5I34 GDP 0.00004456 0.51409 3.16742
10 2ZR9 DTP 0.00003855 0.51382 3.16742
11 2PWY SAH 0.01304 0.41301 3.16742
12 2OFW ADX 0.0001189 0.53452 3.36538
13 1SVI GDP 0.000000000961 0.71046 3.58974
14 3P4X ADP 0.000009364 0.53019 3.61991
15 3QF7 ANP 0.0001464 0.50035 3.61991
16 5LB3 ADP 0.00006017 0.49529 3.61991
17 2D7D ADP 0.0004919 0.46228 3.61991
18 1JJV ATP 0.00002049 0.49001 3.8835
19 2PEZ GGZ 0.00006464 0.53928 3.91061
20 2PEZ DAT 0.00006464 0.53928 3.91061
21 3TK1 GDP 0.00000000001256 0.76935 4.0724
22 1JI0 ATP 0.000006513 0.56708 4.0724
23 2IXE ATP 0.00006066 0.52351 4.0724
24 4FCW ADP 0.0002714 0.47724 4.0724
25 4LJ9 ACP 0.0006771 0.45581 4.0724
26 2D2F ADP 0.00005929 0.42954 4.0724
27 3DC4 ADP 0.000002348 0.5414 4.08163
28 3BFV ADP 0.00001622 0.53134 4.08163
29 4P32 ADP 0.00007332 0.5195 4.08163
30 2ZPT A3P 0.03339 0.41918 4.08163
31 1S7N COA 0.007987 0.41844 4.08163
32 1J99 AND 0.0258 0.40851 4.08163
33 4QRH 0O2 0.002772 0.44076 4.28571
34 4ZKD GDP 0.00000000107 0.76771 4.52489
35 3KJI ADP 0.000003515 0.57246 4.52489
36 1NJF ADP 0.00001895 0.54312 4.52489
37 1NJF AGS 0.00003778 0.53353 4.52489
38 3EZ2 ADP 0.00005623 0.51336 4.52489
39 2OBM ADP 0.000131 0.51185 4.52489
40 1G6H ADP 0.0000002045 0.67301 4.97738
41 2CBZ ATP 0.0000004132 0.6524 4.97738
42 5L3W GDP 0.000001049 0.59409 4.97738
43 3NHB ADP 0.00000337 0.59026 4.97738
44 4RZ3 ADP 0.000005215 0.56728 4.97738
45 2QEN ADP 0.00001954 0.53981 4.97738
46 2XAU ADP 0.00003754 0.52062 4.97738
47 5XDR ADP 0.00004253 0.51504 4.97738
48 4HSE ADP 0.00002634 0.50662 4.97738
49 1NST A3P 0.003962 0.42928 4.97738
50 2RCN GDP 0.00000000003979 0.79283 5.10204
51 4J0Q GDP 0.0000000001406 0.78145 5.10204
52 4CVN ADP 0.000004196 0.57648 5.10204
53 1ZIN AP5 0.0001661 0.52832 5.10204
54 3FKQ ATP 0.00000306 0.50955 5.10204
55 1R6B ADP 0.00006856 0.5053 5.10204
56 4WZ6 ATP 0.000009269 0.50243 5.10204
57 2C04 GCP 0.00001324 0.49192 5.10204
58 3KTA AP5 0.00007745 0.46193 5.10204
59 1D2N ANP 0.001438 0.45459 5.10204
60 2GK6 ADP 0.000459 0.44651 5.10204
61 5K2M ADP 0.02286 0.40091 5.10204
62 5BQ5 ADP BEF 0.00005875 0.47989 5.29101
63 3LRE ADP 0.0000002765 0.65758 5.42986
64 1FNN ADP 0.00002782 0.458 5.42986
65 5GVR LMR 0.00001938 0.40891 5.42986
66 2W58 ADP 0.0000005396 0.64923 5.44554
67 1VHT BA3 0.0002118 0.48509 5.50459
68 1WF3 GNP 0.0000000008891 0.77171 5.88235
69 3COB ADP 0.0000001407 0.5567 5.88235
70 3H4S ADP 0.0000001867 0.55115 5.88235
71 4FRZ ADP 0.0000006747 0.549 5.88235
72 4H1V GNP 0.000002209 0.52088 5.88235
73 3QKT ANP 0.00008559 0.52049 5.88235
74 5X40 ACP 0.00009808 0.51551 5.88235
75 2PZE ATP 0.000001448 0.51514 5.88235
76 3T34 GDP 0.00001543 0.45188 5.88235
77 3QXC ATP 0.0001402 0.40481 5.88235
78 1Y63 ADP 0.000001444 0.58031 5.97826
79 3VMF GTP 0.0000000005843 0.7777 6.12245
80 3WXM GTP 0.0000000006169 0.77654 6.12245
81 3A4M ADP 0.000003231 0.53538 6.12245
82 4P4T GDP 0.000000381 0.53344 6.12245
83 3FB4 AP5 0.0002451 0.51958 6.12245
84 3EWA ANP 0.00002927 0.5194 6.12245
85 2IS6 ADP 0.00003463 0.51599 6.12245
86 1K6M AGS 0.0001152 0.51209 6.12245
87 4MKF AP5 0.000369 0.51158 6.12245
88 4IHQ ADP 0.0000359 0.50402 6.12245
89 5GJC ATP 0.00007098 0.50147 6.12245
90 1XX6 ADP 0.0004069 0.46612 6.12245
91 2GMV UN8 0.003148 0.44823 6.12245
92 2GMV PEP 0.003756 0.44728 6.12245
93 1NHX FTB 0.008326 0.44414 6.12245
94 1NHX PEP 0.008266 0.44338 6.12245
95 3BER AMP 0.002107 0.43281 6.12245
96 1G3M PCQ 0.0161 0.42439 6.12245
97 1G3M A3P 0.0161 0.42439 6.12245
98 3RC3 ANP 0.002979 0.4187 6.12245
99 2J5V PCA 0.02515 0.40993 6.12245
100 2XTZ GSP 0.000000002505 0.74647 6.33484
101 1PUJ GNP 0.000000001468 0.73329 6.33484
102 1OE0 TTP 0.001511 0.46254 6.33484
103 3Q9L ATP 0.0000853 0.45404 6.33484
104 2I4I AMP 0.005557 0.42223 6.33484
105 4CZG QH3 0.0307 0.40778 6.33484
106 4CZG ADP 0.02934 0.40778 6.33484
107 1GXU 2HP 0.0001583 0.49408 6.59341
108 4Q1A 2XZ 0.0005416 0.5563 6.78571
109 4Q1A UDP 0.0005416 0.5563 6.78571
110 3EC1 GDP 0.00000000006729 0.78743 6.78733
111 1TAD ALF 0.000000006886 0.73293 6.78733
112 1TAD GDP 0.000000006886 0.73293 6.78733
113 3CNL GNP 0.000000001532 0.70172 6.78733
114 3FWY ADP 0.0000009486 0.60273 6.78733
115 2ZFI ADP 0.00001039 0.54037 6.78733
116 1XKV ATP 0.0000216 0.53197 6.78733
117 1OS1 ATP 0.0001663 0.51365 6.78733
118 1OS1 PYR 0.0001796 0.51365 6.78733
119 1CR1 TTP 0.00009141 0.51257 6.78733
120 4JLV ADP 0.000199 0.47238 6.78733
121 4GOX A3P 0.0001591 0.41071 6.78733
122 5MVR ADP 0.00001119 0.53886 6.79012
123 4TTQ ATP 0.0000233 0.52401 6.97674
124 1JWY GDP 0.0000009753 0.59896 7.14286
125 1F9V ADP 0.0000004406 0.5566 7.14286
126 4KFU ACP 0.000001784 0.53259 7.14286
127 1KO8 6PG 0.00003244 0.53187 7.14286
128 1S3G AP5 0.0002576 0.51846 7.14286
129 1JWY ADP 0.00005262 0.5107 7.14286
130 4PX9 ADP 0.00003 0.50772 7.14286
131 5M7P ADP 0.0002089 0.49291 7.14286
132 2FAH GDP 0.0002539 0.48398 7.14286
133 4R2I ANP 0.0003682 0.454 7.14286
134 5VGR GDP 0.0001589 0.44198 7.14286
135 3R96 ACO 0.0216 0.41674 7.14286
136 3R96 AMP 0.0216 0.41674 7.14286
137 3MGB PAP 0.01379 0.40689 7.14286
138 2V2V V12 0.03944 0.40675 7.14286
139 5H56 TYD 0.00002076 0.5607 7.17949
140 5H56 ADP 0.00002076 0.5607 7.17949
141 2CE7 ADP 0.00001995 0.5336 7.23982
142 2B8T THM 0.005299 0.42892 7.23982
143 3V2U ATP 0.01197 0.41161 7.23982
144 3H86 AP5 0.0001881 0.51878 7.29167
145 4HUT ATP 0.006869 0.43408 7.32984
146 3W5J GDP 0.0000002249 0.55217 7.35294
147 4BQS K2Q 0.00005571 0.54722 7.38636
148 4BQS ADP 0.000009458 0.54226 7.38636
149 4WOP CTP 0.0005204 0.47598 7.55556
150 3CX8 GSP 0.000000006483 0.73424 7.69231
151 1ZCB GDP 0.00000001881 0.70322 7.69231
152 3VX3 ADP 0.000006187 0.56654 7.69231
153 3B9Q MLI 0.00001441 0.56271 7.69231
154 2BIF ANP 0.0002433 0.51164 7.69231
155 2BIF SIN 0.0004078 0.51164 7.69231
156 2ZE7 DST 0.002797 0.44926 7.69231
157 2ZE7 AMP 0.002596 0.44926 7.69231
158 2OG2 MLI 0.000004666 0.42639 7.69231
159 5KSP GDP 0.0000006992 0.59882 7.89474
160 1AZT GSP 0.000000007729 0.73042 8.1448
161 1CS4 GSP 0.00000001174 0.5173 8.1448
162 1XMV ADP 0.00004683 0.51308 8.1448
163 5IRR GSP 0.0000008105 0.49748 8.1448
164 2AWN ADP 0.0000000576 0.71711 8.16327
165 5L3S GNP 0.000001085 0.61377 8.16327
166 5L3V GDP 0.0000004259 0.61261 8.16327
167 2Q2Y ADP 0.00008809 0.54257 8.16327
168 2Q2Y MKR 0.0000895 0.54089 8.16327
169 5LTJ ADP 0.00002143 0.52902 8.16327
170 2QZ4 ADP 0.00002932 0.5257 8.16327
171 1NN5 ANP 0.0001199 0.52411 8.16327
172 1RRC ADP 0.0000008872 0.52289 8.16327
173 1FP6 ADP 0.000003539 0.51796 8.16327
174 1NN5 2DT 0.01923 0.43875 8.16327
175 1P72 ADP 0.04131 0.42154 8.16327
176 1AQU A3P 0.007473 0.41604 8.16327
177 1OJ4 ANP 0.01053 0.40887 8.16327
178 1L2T ATP 0.00007888 0.40801 8.16327
179 2X4Z X4Z 0.03533 0.40255 8.16327
180 2VF7 ADP 0.00008593 0.5007 8.59729
181 4OI4 ATP 0.0002768 0.49345 8.69565
182 3PQC GDP 0.000000006384 0.64573 8.71795
183 4QM7 GTP 0.000009706 0.54174 8.77193
184 2ODE ALF GDP 0.00000000649 0.73422 9.04977
185 4NON GDP 0.000000004001 0.52362 9.04977
186 1YTM ATP 0.00008035 0.44079 9.04977
187 3E70 GDP 0.0000004492 0.60784 9.18367
188 4AG5 ADP 0.000003157 0.59113 9.18367
189 5KSZ GCP 0.000001221 0.59098 9.18367
190 3ZFD ANP 0.000006367 0.55706 9.18367
191 2VVG ADP 0.00000009326 0.54211 9.18367
192 2ZPA ADP 0.0000415 0.52672 9.18367
193 5G41 AP5 0.0005111 0.50869 9.18367
194 1OFH ADP 0.00008452 0.50396 9.18367
195 3DKP ADP 0.0001157 0.49157 9.18367
196 2C9O ADP 0.00002439 0.45249 9.18367
197 2FSH ANP 0.0009661 0.44068 9.18367
198 4ITM ATP 0.00398 0.44007 9.18367
199 3FVQ ATP 0.00009479 0.42891 9.18367
200 2X7I CIT 0.006239 0.4108 9.18367
201 4C0X AQN 0.03181 0.40271 9.35961
202 4LPS GDP 0.0000000534 0.62735 9.50226
203 1ION ADP 0.000008359 0.55147 9.50226
204 1G3Q ADP 0.000004951 0.54047 9.50226
205 1B0U ATP 0.00003195 0.52683 9.50226
206 2WJH GDP 0.00000000279 0.71147 9.63855
207 2WJH FLC 0.00000107 0.59369 9.63855
208 1SVK ALF GDP 0.000000006889 0.73545 9.95475
209 1BH2 GSP 0.00000002718 0.70309 9.95475
210 2JLR ANP 0.0001205 0.49938 9.95475
211 1Z6T ADP 0.00004622 0.45953 9.95475
212 3WY9 GDP 0.00000000003026 0.81338 10.2041
213 3WYA GDP 0.0000000001341 0.76824 10.2041
214 1GOJ ADP 0.00000007363 0.68841 10.2041
215 3B5J 12D 0.000005443 0.57092 10.2041
216 4LYA ATP 0.000003813 0.56423 10.2041
217 1W0J ADP 0.000008532 0.55413 10.2041
218 5TSH ANP 0.00001142 0.53844 10.2041
219 5I0H ADP BEF 0.00003604 0.53215 10.2041
220 5TSH ADP 0.000007671 0.50745 10.2041
221 4IOK ADP 0.0003123 0.49827 10.2041
222 4IOK XPO 0.0002422 0.49827 10.2041
223 2WHX ADP 0.00001333 0.49552 10.2041
224 1W0J ADP BEF 0.0001932 0.49454 10.2041
225 5L3R GCP 0.00000118 0.47657 10.2041
226 5WRJ A3P 0.001863 0.45468 10.2041
227 3HU3 AGS 0.0404 0.44451 10.2041
228 5WRI A3P 0.002606 0.44395 10.2041
229 3IUY AMP 0.002263 0.43137 10.2041
230 1OYY AGS 0.003226 0.42418 10.2041
231 4YS0 ADP 0.0005977 0.42229 10.2041
232 1T3D CYS 0.007928 0.41635 10.2041
233 4XGU ADP 0.00004552 0.52222 10.4072
234 2GDJ ANP 0.0001384 0.48795 10.4072
235 2WJG GDP 0.000000002729 0.70725 10.6383
236 1FQJ GDP 0.000000003421 0.57116 10.8844
237 1FQK GDP 0.00000002557 0.54784 10.8844
238 1LVG ADP 0.0000005043 0.57038 11.1111
239 3U6B GDP 0.00000000003115 0.81278 11.2245
240 1D8T GDP 0.00000000009962 0.77426 11.2245
241 4LC1 GDP 0.0000000001115 0.77198 11.2245
242 5JBQ GDP 0.0000000001251 0.76965 11.2245
243 4P3Y GDP 0.00000000004743 0.76845 11.2245
244 4G5G GDP 0.000000000138 0.76766 11.2245
245 3MD0 GDP 0.0000000001251 0.74896 11.2245
246 3U6K GDP 0.0000000003579 0.74837 11.2245
247 4PC3 GDP 0.000000003086 0.71794 11.2245
248 2BVN GNP 0.0000000002096 0.68808 11.2245
249 1IHU ADP 0.000002232 0.59592 11.2245
250 1IHU AF3 0.000001977 0.59592 11.2245
251 3UIE ANP 0.000008129 0.55204 11.2245
252 4YMU ATP 0.000006735 0.53518 11.2245
253 2Y65 ADP 0.0000007245 0.52993 11.2245
254 1BG2 ADP 0.0000002087 0.52937 11.2245
255 1KK8 BEF ADP 0.00004333 0.52324 11.2245
256 1QF5 GDP 0.0003322 0.52266 11.2245
257 2XTN GTP 0.0000006619 0.49567 11.2245
258 1G6O ADP 0.00002702 0.49219 11.2245
259 1QF5 RPL 0.007513 0.47855 11.2245
260 1B7T ADP 0.0001053 0.46914 11.2245
261 4KBF AMP 0.0008656 0.44322 11.2245
262 1UJ2 C5P 0.0001028 0.52047 11.3122
263 1UJ2 ADP 0.0001723 0.50934 11.3122
264 1M7G ADX 0.00001305 0.57267 11.3744
265 1M7G AV2 0.000001125 0.57129 11.3744
266 1M7G ADP 0.0000157 0.56493 11.3744
267 2VOH CIT 0.004709 0.40733 11.465
268 2RGX AP5 0.0003701 0.51269 11.6505
269 5GOE GDP 0.000000001865 0.67041 11.7647
270 3DEF GDP 0.0000004613 0.61444 11.7647
271 2XT3 ADP 0.0000001082 0.56026 11.7647
272 1SQ5 ADP 0.00006338 0.49025 11.7647
273 5FTB ANP 0.00003879 0.48804 11.7647
274 5FHD ADP ALF 0.00001638 0.45594 11.7647
275 2Z5F A3P 0.006771 0.42193 11.7647
276 3TMK T5A 0.0001902 0.51072 12.037
277 5H67 ATP 0.001399 0.44379 12.0603
278 5CK5 GDP 0.0000000000595 0.76386 12.2172
279 4WZA ADP 0.00001845 0.59856 12.2172
280 4WZA ACP 0.00003343 0.58463 12.2172
281 3IO3 ADP 0.000007496 0.56253 12.2172
282 1YRB GDP 0.0000000000006815 0.7806 12.2449
283 2C77 GNP 0.000000002873 0.73069 12.2449
284 3AB3 GDP 0.000000003007 0.72973 12.2449
285 2C78 GNP 0.0000000007301 0.60182 12.2449
286 5IFS ADP 0.00002098 0.53257 12.2449
287 4U00 ADP 0.0000001836 0.52763 12.2449
288 1OXV ANP 0.00001222 0.52337 12.2449
289 2DPY ADP 0.00008581 0.512 12.2449
290 2F3R G5P 0.003718 0.45019 12.2449
291 1Q20 PLO 0.01525 0.42023 12.2449
292 1Q20 A3P 0.01525 0.42023 12.2449
293 1NRJ GTP 0.00000002701 0.68355 12.6582
294 5HCN GCP 0.00000000003681 0.79973 12.6697
295 1T5C ADP 0.0000005004 0.51617 12.6697
296 4PPF FLC 0.000001118 0.63068 13.2653
297 4TMZ GSP 0.0000000003353 0.59484 13.2653
298 2IYL GDP 0.0000009688 0.58839 13.2653
299 4MKG AP5 0.0003602 0.51093 13.2653
300 2B8W ALF 5GP 0.0002185 0.50047 13.2653
301 4ZNL BEF ADP 0.0001167 0.49446 13.2653
302 2PL3 ADP 0.0001111 0.48251 13.2653
303 3TBK ANP 0.0005098 0.44463 13.2653
304 1V8B NAD 0.03857 0.4036 13.2653
305 1TQ4 GDP 0.0000000004312 0.6236 13.5747
306 1JJ7 ADP 0.0000001687 0.67797 14.0271
307 4E03 ADP 0.000004056 0.56296 14.0777
308 2NCD ADP 0.0000007906 0.62048 14.2857
309 5IRN ADP 0.000003529 0.57238 14.2857
310 2WOJ ADP ALF 0.00001249 0.56591 14.2857
311 4XTR ATP 0.00001366 0.55741 14.2857
312 4XTR ADP 0.000009573 0.55741 14.2857
313 4XVU ATP 0.00001449 0.55616 14.2857
314 2OZE AGS 0.00002308 0.539 14.2857
315 1XP8 AGS 0.0001863 0.47207 14.2857
316 3ZS9 ADP ALF 0.00001365 0.42989 14.2857
317 1H65 GDP 0.000001105 0.60822 15.3061
318 4D81 ADP 0.00003391 0.5256 15.3061
319 1R0X ATP 0.0001172 0.4818 15.3061
320 4PJ3 ANP 0.0008665 0.4586 15.3061
321 5K04 COA 0.01429 0.40947 15.3061
322 5MEX PAP 0.01224 0.40763 15.3061
323 5MEX SZZ 0.04082 0.4023 15.3061
324 1FFU CDP 0.04759 0.40065 15.3061
325 1Y3A GDP 0.000000012 0.707 15.3846
326 2OM2 GDP 0.00000001579 0.57849 15.3846
327 4YDS ATP 0.000009822 0.55831 16.2896
328 2FH5 GTP 0.0000000002214 0.78461 16.3265
329 4V03 ADP 0.000004013 0.56654 16.3265
330 2VB6 ADP BEF 0.00006951 0.52283 16.3265
331 5N69 ADP 0.00004361 0.5204 16.3265
332 1G41 ADP 0.00003848 0.52012 16.3265
333 4PFO ADP 0.0001003 0.5191 16.3265
334 4A4Z ANP 0.003917 0.42024 16.3265
335 2ZTS ADP 0.00004926 0.44743 17.1315
336 1IWE IMP 0.0002037 0.56412 17.1946
337 3RLF ANP 0.00009025 0.51728 17.3469
338 5J1S ATP 0.0001756 0.50515 17.3469
339 1QF9 ALF 0.0004354 0.5029 17.3469
340 1QF9 C5P 0.0004354 0.5029 17.3469
341 1QF9 ADP 0.0004354 0.5029 17.3469
342 2QG6 NMN 0.0006372 0.48283 17.3469
343 1QHG ATP 0.001885 0.44253 17.3469
344 1QHH ATP 0.003769 0.41283 17.3469
345 4ZG4 VO4 ADP 0.00005009 0.52979 18.0995
346 5M04 GDP 0.000000000009387 0.79903 18.3673
347 1GOT GDP 0.00000002292 0.69018 18.3673
348 5KDO GDP 0.0000000331 0.56835 18.3673
349 4HI0 GDP 0.00000003859 0.56057 18.3673
350 1GP2 GDP 0.00000002799 0.5471 18.3673
351 4AF0 IMP 0.01513 0.40825 18.3673
352 5HR5 ADP 0.00007308 0.51237 19.0045
353 5HR5 FLC 0.02787 0.40566 19.0045
354 1YQT ADP 0.000003266 0.51936 19.3878
355 2X77 GDP 0.0000000001187 0.74326 19.5767
356 5KUT GDP 0.000000008548 0.68863 20.4082
357 3IIJ ADP 0.000003534 0.56219 20.4082
358 1WDT GTP 0.000000103 0.55277 20.4082
359 4M9Q GNP 0.0000000002198 0.61774 20.8145
360 3DOE GTP 0.0000000002315 0.79091 20.8333
361 2KIN ADP 0.0000001777 0.53137 21
362 1UPT GTP 0.0000000006282 0.76626 21.0526
363 3AQ4 GDP 0.0000000002828 0.72776 21.1957
364 2HF9 GSP 0.00000008208 0.57698 21.4286
365 1V8K ANP 0.00001012 0.5409 21.4286
366 4TMK T5A 0.006258 0.43996 21.4286
367 1KSH GDP 0.00000000004729 0.81709 21.5054
368 1F6B GDP 0.000000001088 0.73068 21.7172
369 1MKY GDP 0.00000000005339 0.78688 21.7195
370 1MR3 G3D 0.00000000005405 0.7919 22.0994
371 1HTW ADP 0.000005726 0.55593 22.1519
372 1O3Y GTP 0.000000000614 0.77018 22.2892
373 2J59 GTP 0.0000000004741 0.5926 22.2892
374 1J2J GTP 0.000000001097 0.58234 22.2892
375 1P9B GDP 0.00004846 0.52091 22.449
376 3B7G ANP 0.0001203 0.47879 22.449
377 5MZN ADP 0.0003994 0.45172 22.449
378 4YLG GDP 0.0000000001719 0.78194 22.5434
379 2WIC GNP 0.0000000046 0.67425 23.0769
380 4R98 GNH 0.00000002198 0.66502 23.0769
381 1RE0 GDP 0.00000000004726 0.7688 23.1707
382 1S9D GDP 0.0000000003795 0.72246 23.1707
383 1UKZ ADP 0.0002355 0.51236 23.4694
384 1BXG NAD 0.01475 0.41469 23.4694
385 4KAX GTP 0.000000001079 0.75482 23.6686
386 2A5F GTP 0.000000003785 0.73463 24
387 4DCT GDP 0.00000000004537 0.79547 24.4344
388 3PCR GTP 0.000000001314 0.58118 24.6914
389 1M2O GNP 0.00000001308 0.71101 25.2632
390 3N5C GDP 0.0000000004183 0.74521 25.3086
391 2W83 GTP 0.000000001057 0.58438 25.4545
392 4IDN GNP 0.0001481 0.50463 25.5102
393 1W7J ADP BEF 0.0000445 0.46038 25.5102
394 3A1S GDP 0.0000000807 0.62152 25.7919
395 2WKQ GTP 0.000000002587 0.56903 28.0543
396 4ZI2 GNP 0.00000000005811 0.8166 28.4211
397 4GOJ GNP 0.00000000007001 0.81266 28.5714
398 3ZIA ADP 0.00001748 0.5393 28.5714
399 3ZIA ATP 0.00001624 0.53467 28.5714
400 2QTV GNP 0.000000007068 0.72129 28.7425
401 2GJ8 ALF GDP 0.0000000003905 0.55706 29.0698
402 2J0V GDP 0.0000000007592 0.73801 29.2453
403 1FZQ GDP 0.00000000001229 0.81662 29.2818
404 5JCP GDP ALF 0.000000009829 0.60891 29.4118
405 1YZG GDP 0.000000001061 0.73119 29.6089
406 1ZJ6 G3D 0.0000000004189 0.75013 30.4813
407 3T1O GDP 0.0000000066 0.69818 30.8081
408 3T12 GDP ALF 0.00000001016 0.56985 30.8081
409 3REF GDP 0.000000009001 0.56402 30.9278
410 1GWN GTP 0.00000007688 0.66154 31.2195
411 3T5G GDP 0.00000000008011 0.78877 31.4917
412 1RYH GNP 0.0000000003973 0.75589 32.0197
413 4BAS GNP 0.00000002129 0.69175 32.1608
414 1XTQ GDP 0.0000000003174 0.7842 32.2034
415 1DS6 GDP 0.0000000002284 0.75746 32.8125
416 1E96 GTP 0.000000003183 0.74133 32.8125
417 1I4D GDP 0.0000000002283 0.73812 33.3333
418 2W2X GSP 0.00000000603 0.71509 33.5135
419 1OW3 GDP 0.00000001024 0.69692 33.6788
420 4V0K GDP 0.000000002169 0.56143 33.7278
421 2GCN GDP 0.00000000369 0.72881 33.8308
422 2GCO GNP 0.000000003484 0.71935 33.8308
423 1NF3 GNP 0.000000006528 0.72592 33.8462
424 2V7Q ATP 0.000005236 0.56108 34
425 2V7Q ADP 0.0001271 0.48967 34
426 2CK3 ANP 0.0002223 0.43004 34
427 2CK3 ADP 0.0002053 0.40799 34
428 5DI3 GNP 0.0000000003165 0.61403 34.0541
429 1A4R GNH 0.000000002123 0.72966 34.555
430 1A4R GDP 0.000000003158 0.72513 34.555
431 4D0N GDP 0.0000000001809 0.76218 34.5946
432 1CXZ GSP 0.0000000282 0.6858 34.6154
433 1M7B GTP 0.00000002724 0.56298 34.7826
434 2NGR GDP 0.000000001316 0.72679 35.0785
435 4ITR GDP 0.000000003337 0.72398 35.0785
436 1GRN GDP 0.000000004785 0.71275 35.0785
437 5HPY GDP 0.000000005047 0.71164 35.1351
438 3LXR GDP 0.0000000005503 0.69323 35.1351
439 2WMO GTP 0.000000003453 0.71149 35.2632
440 1G4U GDP 0.000000003481 0.60656 35.3261
441 4XOI GTP 0.0000000188 0.70039 35.5556
442 1ZUI SKM 0.00005355 0.5481 35.7143
443 2FJU GSP 0.0000000009483 0.75401 35.9551
444 4XSH GSP 0.000000004637 0.71709 36.3129
445 1KMQ GNP 0.000000009277 0.71246 36.413
446 4YC7 GNP 0.000000003028 0.73299 36.4641
447 1MH1 GNP 0.000000001974 0.75451 36.5591
448 5IRC GDP 0.00000005289 0.65544 36.5591
449 1TX4 ALF GDP 0.00000002544 0.54376 36.7232
450 4DID GDP 0.000000001186 0.7289 37.3057
451 1HE1 GDP 0.000000001166 0.60618 37.5
452 1HE1 AF3 0.004999 0.42511 37.5
453 3SBD GNP 0.000000006653 0.72551 37.9679
454 1R4A GNP 0.0000000001634 0.80175 38.7879
455 1ZD9 GDP 0.000000000994 0.62847 38.8298
456 5EE5 GTP 0.0000000001183 0.80156 39.1813
457 2G77 GDP 0.00000000005947 0.68676 39.899
458 2G77 AF3 0.01651 0.40361 39.899
459 4DKX GDP 0.00000000002906 0.79919 41.2037
460 2BCG GDP 0.000000000002957 0.71329 41.7476
461 4DSU GDP 0.00000000003841 0.83941 41.7989
462 4U5X GNP 0.000000003598 0.7224 42.1348
463 2F9L GDP 0.0000000001061 0.61536 42.2111
464 1OIX GDP 0.0000000002557 0.79543 42.4084
465 3CPJ GDP 0.00000000000411 0.85481 42.5339
466 5UQW GDP 0.00000000005801 0.82386 42.8571
467 1OIV GDP 0.0000000001039 0.81476 42.9319
468 5TB5 GDP 0.000000000008563 0.83469 43.2432
469 5TAR GDP 0.000000000006216 0.74571 43.2432
470 5SZH GNP 0.00000000002688 0.84711 43.3498
471 2ZEJ GDP 0.00000000102 0.76874 44.0217
472 2CJW GDP 0.000000000008383 0.82436 44.2708
473 2A9K GDP 0.00000000005655 0.80506 44.385
474 5JCZ GDP 0.0000000003424 0.63779 45.2514
475 1Z06 GNP 0.00000000001608 0.85127 45.5026
476 3BC1 GNP 0.00000000003627 0.83734 45.641
477 2EW1 GNP 0.00000000003295 0.83235 45.7711
478 1VG0 GDP 0.000000000002487 0.8652 45.8937
479 1VG8 GNP 0.00000000002777 0.8464 45.8937
480 3Q85 GNP 0.000000000001312 0.86189 46.1538
481 5XCO GDP 0.0000000000172 0.82521 46.1988
482 4LX0 BEF GDP 0.0000000004198 0.78788 46.3277
483 3RWO GDP 0.0000000002715 0.79415 46.4865
484 1YZN GNP 0.0000000001542 0.56815 46.4865
485 2HV8 GTP 0.0000000001972 0.80101 46.5116
486 2A5J GDP 0.000000000001287 0.80045 46.5969
487 4K81 GTP 0.0000000002955 0.79845 46.7836
488 2C5L GTP 0.0000000001355 0.81225 46.8208
489 1ZC3 GNP 0.00000000006528 0.82798 46.8571
490 2D7C GTP 0.00000000045 0.7833 47.3054
491 5O2T GSP 0.0000000001904 0.56672 47.3373
492 1UAD GNP 0.0000000001592 0.8056 47.4286
493 5UFQ GNP 0.0000000001464 0.8074 47.5904
494 3Q72 GNP 0.00000000008163 0.7586 47.5904
495 1NVU GTP 0.00000000003177 0.84351 48.1928
496 2UZI GTP 0.0000000002891 0.7928 48.1928
497 1CLU DBG 0.00000000203 0.78639 48.1928
498 5E95 GDP 0.00000000001164 0.71308 48.2143
499 1G16 GDP 0.00000000003957 0.82473 48.2353
500 1X1R GDP 0.00000000005691 0.83094 48.3146
501 3TKL GTP 0.00000000006947 0.60382 48.4694
502 1LFD GNP 0.00000000002988 0.84149 48.503
503 4C4P GNP 0.0000000001375 0.81194 48.5549
504 1NVV GNP 0.00000000002807 0.84617 48.7952
505 3KUD GDP 0.00000000003237 0.82506 48.7952
506 1WQ1 GDP 0.0000000001036 0.61264 48.7952
507 1WQ1 AF3 0.002142 0.45323 48.7952
508 1U8Z GDP 0.00000000008443 0.61907 48.8095
509 1Z0J GTP 0.0000000003667 0.56249 48.8235
510 1KY3 GDP 0.00000000003874 0.80844 48.9011
511 1YVD GNP 0.00000000009787 0.58757 49.1124
512 3DDC GNP 0.00000000003893 0.83912 49.3976
513 2HT6 GDP 0.000000000003003 0.82133 49.4253
514 2FFQ GSP 0.0000000006957 0.77699 49.7076
515 1Z0A GDP 0.000000000002699 0.8584 50
516 3TNF GNP 0.00000000007429 0.82832 50
517 4KVG GTP 0.00000000009607 0.81644 50
518 3QBT GNP 0.00000000002416 0.60036 50
519 4LHW GNP 0.000000000071 0.58883 50
Pocket No.: 2; Query (leader) PDB : 3GJ7; Ligand: GDP; Similar sites found: 16
This union binding pocket(no: 2) in the query (biounit: 3gj7.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4M7V RAR 0.0257 0.41557 1.14286
2 2ZW5 COA 0.01503 0.4045 4.97738
3 1BO4 COA 0.006159 0.41351 7.14286
4 3C5E ATP 0.04951 0.40658 7.14286
5 1NV8 SAM 0.01626 0.41004 9.18367
6 1NV8 MEQ 0.02381 0.40187 9.18367
7 1FQK ALF 0.003402 0.44005 10.8844
8 1FQJ ALF 0.004365 0.43428 10.8844
9 5X62 SAH 0.009469 0.40697 11.2245
10 3NDJ JHZ 0.0492 0.40317 11.2245
11 3NDJ SAH 0.0492 0.40317 11.2245
12 5M67 NAD 0.04923 0.40462 14.4796
13 5T67 JHZ 0.04552 0.40419 17.3469
14 2F5X ASP 0.0107 0.4147 18.3673
15 2NGR AF3 0.003129 0.40195 35.0785
16 1G4U AF3 0.02047 0.40083 35.3261
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