Receptor
PDB id Resolution Class Description Source Keywords
3GJ8 1.82 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF34 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
A:303;
C:301;
C:303;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ8 1.82 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF34 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 185 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ8; Ligand: GDP; Similar sites found: 518
This union binding pocket(no: 1) in the query (biounit: 3gj8.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4D81 ADP 0.00006082 0.50682 None
2 2V2V V12 0.04033 0.40286 1.35747
3 3DKP ADP 0.0001297 0.4772 1.80995
4 3IUY AMP 0.002059 0.42485 1.80995
5 2FNA ADP 0.00002472 0.44932 2.26244
6 5WRJ A3P 0.003368 0.43736 2.26244
7 5WRI A3P 0.004598 0.42743 2.26244
8 1NV8 SAM 0.01813 0.40771 2.71493
9 1NV8 MEQ 0.01856 0.40721 2.71493
10 4PPF FLC 0.000001089 0.63616 3.16742
11 2PWY SAH 0.005746 0.4262 3.16742
12 2ZPA ADP 0.0000714 0.50875 3.26087
13 4NU0 AP5 0.0003569 0.50283 3.26087
14 1H74 ADP 0.01965 0.41083 3.26087
15 2X7I CIT 0.005439 0.40528 3.26087
16 2OFW ADX 0.0001608 0.52156 3.36538
17 1OBV FMN 0.01077 0.40807 3.5503
18 2Q2Y ADP 0.0001405 0.52581 3.61991
19 2Q2Y MKR 0.0001518 0.52282 3.61991
20 3P4X ADP 0.00001191 0.51073 3.61991
21 1SVM ATP 0.001068 0.48864 3.61991
22 3QF7 ANP 0.0002344 0.48449 3.61991
23 1DAK DPU 0.00157 0.47498 3.61991
24 1JJV ATP 0.00002203 0.48205 3.8835
25 2PEZ DAT 0.00008648 0.52636 3.91061
26 2C78 GNP 0.0000000002857 0.76997 4.0724
27 3TK1 GDP 0.00000000001107 0.74267 4.0724
28 2C77 GNP 0.000000001015 0.74027 4.0724
29 1P72 ADP 0.0001487 0.51472 4.0724
30 2IXE ATP 0.00009439 0.50768 4.0724
31 1JI0 ATP 0.000007109 0.50342 4.0724
32 2C04 GCP 0.00001348 0.49876 4.0724
33 5G41 AP5 0.0006814 0.49667 4.0724
34 1XP8 AGS 0.000213 0.45764 4.0724
35 2D2F ADP 0.0000691 0.41787 4.0724
36 5MEX SZZ 0.03396 0.40302 4.0724
37 1ZIN AP5 0.0002268 0.5153 4.14747
38 4MKF AP5 0.000496 0.49929 4.14747
39 3FB4 AP5 0.0003252 0.50737 4.16667
40 5I34 GDP 0.00003833 0.51022 4.34783
41 4AG5 ADP 0.000003477 0.50321 4.34783
42 1D2N ANP 0.002189 0.44086 4.34783
43 1G3M PCQ 0.02267 0.41296 4.34783
44 1AQU A3P 0.009033 0.40793 4.34783
45 4ZKD GDP 0.0000000006242 0.76678 4.52489
46 1E2K TMC 0.00008705 0.53632 4.52489
47 3B5J 12D 0.000006654 0.50695 4.52489
48 1R0X ATP 0.0001458 0.46589 4.52489
49 4KBF AMP 0.0008447 0.43387 4.52489
50 1S3G AP5 0.0003377 0.50655 4.60829
51 4CVN ADP 0.000005085 0.51329 4.71204
52 3A4M ADP 0.000003359 0.52021 4.97738
53 2OZE AGS 0.00004079 0.52018 4.97738
54 2QEN ADP 0.00003632 0.51995 4.97738
55 1G6H ADP 0.0000002407 0.50725 4.97738
56 4HSE ADP 0.00005148 0.50436 4.97738
57 1OXV ANP 0.00001442 0.5042 4.97738
58 1YQT ADP 0.000003836 0.50105 4.97738
59 3NHB ADP 0.000003752 0.50041 4.97738
60 2CBZ ATP 0.0000005655 0.49737 4.97738
61 1OFH ADP 0.0001569 0.48503 4.97738
62 1NST A3P 0.005679 0.41738 4.97738
63 5BQ5 ADP BEF 0.00009303 0.4806 5.29101
64 1BO4 COA 0.005461 0.40446 5.35714
65 3MD0 GDP 0.00000000009221 0.72744 5.42986
66 4WZ6 ATP 0.00001119 0.56629 5.43478
67 3KJI ADP 0.000004722 0.55835 5.43478
68 3FKQ ATP 0.000007325 0.55244 5.43478
69 1GOJ ADP 0.0000001032 0.524 5.43478
70 3DC4 ADP 0.000002813 0.52174 5.43478
71 3LRE ADP 0.0000003747 0.50563 5.43478
72 1L2T ATP 0.0001456 0.50288 5.43478
73 4MKG AP5 0.0004814 0.49876 5.43478
74 2QQ0 ANP 0.0003447 0.49668 5.43478
75 2QQ0 THM 0.0002983 0.49668 5.43478
76 2QQ0 TMP 0.0003648 0.49545 5.43478
77 1XX6 ADP 0.0004749 0.45048 5.43478
78 2GK6 ADP 0.0005186 0.43404 5.43478
79 5K5Z ANP 0.00008289 0.42583 5.43478
80 2ZW5 COA 0.01515 0.40433 5.43478
81 2W58 ADP 0.0000006626 0.49367 5.44554
82 1VHT BA3 0.0002581 0.47506 5.50459
83 4KFU ACP 0.000001783 0.51674 5.66038
84 4R2I ANP 0.0003286 0.48621 5.71429
85 1WF3 GNP 0.000000001512 0.74816 5.88235
86 3E70 GDP 0.0000004557 0.59835 5.88235
87 4KVA GTP 0.000007826 0.58922 5.88235
88 4H1V GNP 0.000002928 0.57104 5.88235
89 3T34 GDP 0.00001819 0.54401 5.88235
90 3COB ADP 0.0000001908 0.53528 5.88235
91 1F9V ADP 0.0000006198 0.53415 5.88235
92 2NCD ADP 0.000001119 0.52543 5.88235
93 2DPY ADP 0.0001072 0.5103 5.88235
94 1G6O ADP 0.00004909 0.50831 5.88235
95 3QKT ANP 0.0001225 0.50648 5.88235
96 2PZE ATP 0.00000175 0.49665 5.88235
97 3QXC ATP 0.0002507 0.49529 5.88235
98 1UKZ ADP 0.0003025 0.50095 5.91133
99 1Y63 ADP 0.000001347 0.56374 5.97826
100 1NN5 ANP 0.0001851 0.50847 6.04651
101 1NN5 2DT 0.02943 0.42502 6.04651
102 1QF9 C5P 0.0005337 0.49277 6.18557
103 1YRB GDP 0.000000000002535 0.84944 6.33484
104 1PUJ GNP 0.000000002373 0.7115 6.33484
105 1P9B GDP 0.00006309 0.50874 6.33484
106 3Q9L ATP 0.0001154 0.4965 6.33484
107 4PX9 ADP 0.00003634 0.49041 6.33484
108 1OE0 TTP 0.002537 0.44656 6.33484
109 2XTZ GSP 0.000000001439 0.74624 6.52174
110 4P4T GDP 0.0000004302 0.61309 6.52174
111 3ZFD ANP 0.00001302 0.53489 6.52174
112 2Y65 ADP 0.000001007 0.50976 6.52174
113 1BG2 ADP 0.000000289 0.50927 6.52174
114 2VB6 ADP BEF 0.0001183 0.50515 6.52174
115 4PFO ADP 0.0001728 0.50125 6.52174
116 3EWA ANP 0.00003585 0.50031 6.52174
117 5X40 ACP 0.0001606 0.49882 6.52174
118 1Z83 AP5 0.0003409 0.49838 6.52174
119 4R43 GDP 0.00009882 0.49784 6.52174
120 2B8W ALF 5GP 0.0003377 0.48534 6.52174
121 5GJC ATP 0.00008523 0.4839 6.52174
122 5M7P ADP 0.0003459 0.47654 6.52174
123 5J1J ANP 0.00000734 0.46545 6.52174
124 3QVV A3P 0.003849 0.44857 6.52174
125 3BFX A3P 0.005112 0.42152 6.52174
126 5T67 JHZ 0.03852 0.40801 6.52174
127 3QVV 3QV 0.03644 0.40514 6.52174
128 3EC1 GDP 0.0000000001262 0.76124 6.78733
129 1TAD GDP 0.000000003563 0.73558 6.78733
130 3CNL GNP 0.0000000008594 0.68871 6.78733
131 1GOT GDP 0.00000002342 0.67903 6.78733
132 5L3V GDP 0.0000005041 0.57998 6.78733
133 3FWY ADP 0.000002004 0.57873 6.78733
134 1TAD ALF 0.000000003563 0.53098 6.78733
135 2ZFI ADP 0.00001273 0.5217 6.78733
136 1XKV ATP 0.00003731 0.5138 6.78733
137 1OS1 PYR 0.0002794 0.49807 6.78733
138 1CR1 TTP 0.0001526 0.49556 6.78733
139 1OS1 ATP 0.0003015 0.49482 6.78733
140 4GOX A3P 0.0002744 0.4877 6.78733
141 5MZN ADP 0.0004549 0.47921 6.78733
142 5MVR ADP 0.00001401 0.52006 6.79012
143 4TTQ ATP 0.00002272 0.51088 6.97674
144 1ZUI SKM 0.00007865 0.533 7.14286
145 5H56 TYD 0.00003562 0.54196 7.17949
146 5H56 ADP 0.00003562 0.54196 7.17949
147 4HI0 GDP 0.00000005156 0.65964 7.23982
148 2B8T THM 0.006503 0.42025 7.23982
149 3H86 AP5 0.0002819 0.50391 7.29167
150 3W5J GDP 0.0000001428 0.54555 7.35294
151 4BQS ADP 0.00001123 0.54219 7.38636
152 3WY9 GDP 0.00000000003359 0.74742 7.6087
153 3WYA GDP 0.0000000001297 0.74211 7.6087
154 4RZ3 ADP 0.000006357 0.55531 7.6087
155 2C9O ADP 0.00003998 0.52305 7.6087
156 2VVG ADP 0.0000001437 0.52017 7.6087
157 1KO8 6PG 0.0000517 0.51534 7.6087
158 1RRC ADP 0.000001068 0.5039 7.6087
159 4P32 ADP 0.0001473 0.49849 7.6087
160 3FVQ ATP 0.000164 0.49407 7.6087
161 1R6B ADP 0.0001047 0.49024 7.6087
162 5N69 ADP 0.00008486 0.47025 7.6087
163 4FCW ADP 0.0003866 0.46426 7.6087
164 4LJ9 ACP 0.0007738 0.44422 7.6087
165 2F3R G5P 0.005122 0.43869 7.6087
166 1QHG ATP 0.002452 0.43227 7.6087
167 4YS0 ADP 0.001064 0.41463 7.6087
168 2PI8 NAG NAG NAG NAG NAG NAG 0.02998 0.40161 7.6087
169 3AB3 GDP 0.000000003586 0.71436 7.69231
170 1ZCB GDP 0.00000001626 0.69545 7.69231
171 5L3R GCP 0.000001574 0.48107 7.69231
172 3B9Q MLI 0.00001284 0.42341 7.69231
173 2OG2 MLI 0.000004116 0.41759 7.69231
174 5KSP GDP 0.000001343 0.57686 7.89474
175 3UIE ANP 0.00001464 0.53254 8
176 1AZT GSP 0.00000000339 0.73664 8.1448
177 2HF9 GSP 0.00000009562 0.64047 8.1448
178 2QZ4 ADP 0.00005504 0.50601 8.1448
179 1F5N GNP 0.000159 0.50487 8.1448
180 5IRR GSP 0.000001518 0.49797 8.1448
181 3VMF GTP 0.0000000005978 0.76464 8.69565
182 2XTN GTP 0.000001169 0.60095 8.69565
183 5L3S GNP 0.000001444 0.59906 8.69565
184 5L3W GDP 0.000001326 0.58064 8.69565
185 3ZS9 ADP ALF 0.00001821 0.55045 8.69565
186 4U00 ADP 0.0000002124 0.50888 8.69565
187 1G41 ADP 0.00007157 0.50075 8.69565
188 2ZR9 DTP 0.00003985 0.49802 8.69565
189 1XMV ADP 0.00008716 0.49389 8.69565
190 2VF7 ADP 0.0001616 0.4816 8.69565
191 4BFW ZVW 0.001686 0.47122 8.69565
192 2PL3 ADP 0.0001302 0.46768 8.69565
193 2D7D ADP 0.0005453 0.44937 8.69565
194 2WOJ ADP ALF 0.00001748 0.43288 8.69565
195 4ITM ATP 0.007014 0.4236 8.69565
196 1OYY AGS 0.004618 0.41015 8.69565
197 2ZPT A3P 0.04504 0.40878 8.69565
198 4A4Z ANP 0.004679 0.40841 8.69565
199 3R96 AMP 0.03129 0.4058 8.69565
200 3R96 ACO 0.03129 0.4058 8.69565
201 3PQC GDP 0.00000001856 0.66613 8.71795
202 2JAQ DCP 0.002594 0.44108 8.78049
203 2ODE ALF GDP 0.000000004218 0.732 9.04977
204 4NON GDP 0.000000008093 0.71557 9.04977
205 1YTM ATP 0.0001296 0.49891 9.04977
206 4OHY ANP 0.0005757 0.47422 9.04977
207 4LPS GDP 0.00000008337 0.63213 9.50226
208 1G3Q ADP 0.000007114 0.54371 9.50226
209 1ION ADP 0.00001327 0.5345 9.50226
210 4LC1 GDP 0.0000000001293 0.74016 9.78261
211 2WJH GDP 0.000000003454 0.69543 9.78261
212 1SVI GDP 0.000000000962 0.68655 9.78261
213 2WJH FLC 0.000001271 0.58149 9.78261
214 3ZQ6 ADP ALF 0.00001137 0.56037 9.78261
215 1FP6 ADP 0.000007117 0.55008 9.78261
216 1NJF ADP 0.00003302 0.52449 9.78261
217 1QF5 GDP 0.0002585 0.52245 9.78261
218 1NJF AGS 0.00006147 0.51653 9.78261
219 2CE7 ADP 0.00003834 0.51325 9.78261
220 5I0H ADP BEF 0.00006836 0.51204 9.78261
221 2XAU ADP 0.00006777 0.50184 9.78261
222 2BIF ANP 0.0003358 0.4987 9.78261
223 2BIF SIN 0.0005645 0.4987 9.78261
224 1K6M AGS 0.0001867 0.49569 9.78261
225 1QF5 RPL 0.007684 0.47375 9.78261
226 2QG6 NMN 0.0009173 0.46963 9.78261
227 3TBK ANP 0.0005792 0.43279 9.78261
228 3BER AMP 0.002087 0.42423 9.78261
229 4HUT ATP 0.009527 0.42279 9.78261
230 4M7V RAR 0.02352 0.41758 9.78261
231 4M7V NAP 0.01824 0.41129 9.78261
232 1SVK ALF GDP 0.000000004486 0.73326 9.95475
233 1BH2 GSP 0.00000001401 0.70653 9.95475
234 5TSH ANP 0.00001283 0.52031 9.95475
235 5TSH ADP 0.00000845 0.49165 9.95475
236 2WHX ADP 0.00001737 0.4774 9.95475
237 2YOH WMJ 0.0005508 0.48804 10
238 2BVN GNP 0.0000000001061 0.77416 10.4072
239 3U6B GDP 0.00000000001946 0.7563 10.4072
240 1D8T GDP 0.00000000006168 0.75572 10.4072
241 5JBQ GDP 0.00000000007201 0.75276 10.4072
242 4P3Y GDP 0.00000000002491 0.75214 10.4072
243 4G5G GDP 0.00000000007959 0.75083 10.4072
244 3U6K GDP 0.0000000002517 0.72964 10.4072
245 4PC3 GDP 0.000000003005 0.65828 10.4072
246 4YMU ATP 0.000005382 0.56564 10.4072
247 4XGU ADP 0.00004922 0.47332 10.4072
248 2GDJ ANP 0.0001673 0.47219 10.4072
249 2WJG GDP 0.000000002203 0.68963 10.6383
250 3WXM GTP 0.000000000606 0.76435 10.8696
251 3CX8 GSP 0.000000003373 0.73675 10.8696
252 3H4S ADP 0.000000268 0.52892 10.8696
253 4FRZ ADP 0.0000008768 0.52824 10.8696
254 2AWN ADP 0.00000006835 0.50268 10.8696
255 3RLF ANP 0.0001552 0.49953 10.8696
256 2IS6 ADP 0.00004131 0.49805 10.8696
257 2JLR ANP 0.0002057 0.48225 10.8696
258 2OBM ADP 0.0001524 0.43181 10.8696
259 4QRH 0O2 0.004396 0.42653 10.8696
260 1FQJ GDP 0.000000004672 0.71551 10.8844
261 1FQK GDP 0.00000002562 0.68021 10.8844
262 1LVG ADP 0.0000005022 0.552 11.1111
263 1GP2 GDP 0.0000000293 0.67742 11.3122
264 5KDO GDP 0.00000003073 0.57787 11.3122
265 1X6V ADP 0.0001122 0.51581 11.3122
266 1UJ2 C5P 0.0001273 0.50955 11.3122
267 1UJ2 ADP 0.0002758 0.49328 11.3122
268 1AKY AP5 0.0003907 0.50085 11.3636
269 1M7G ADX 0.00001974 0.55633 11.3744
270 1M7G AV2 0.000001137 0.55335 11.3744
271 1M7G ADP 0.00002319 0.54926 11.3744
272 2RGX AP5 0.0004532 0.50243 11.6505
273 1RJ9 GCP 0.000004174 0.60737 11.7647
274 3DEF GDP 0.0000008352 0.59328 11.7647
275 2IYL GDP 0.0000007635 0.57655 11.7647
276 2XT3 ADP 0.0000001491 0.5379 11.7647
277 1SQ5 ADP 0.000101 0.49096 11.7647
278 5FTB ANP 0.00006643 0.48713 11.7647
279 5FHD ADP ALF 0.00003102 0.45549 11.7647
280 2Z5F A3P 0.009872 0.40986 11.7647
281 2RCN GDP 0.00000000002894 0.77055 11.9565
282 1CS4 GSP 0.000000004303 0.72892 11.9565
283 1IHU ADP 0.000003761 0.57671 11.9565
284 1IHU AF3 0.000003417 0.57618 11.9565
285 1FNN ADP 0.00004923 0.51634 11.9565
286 1OJ4 ANP 0.009561 0.40677 11.9565
287 1ME8 RVP 0.03307 0.40361 11.9565
288 3TMK T5A 0.0002953 0.49527 12.037
289 5H67 ATP 0.002339 0.42845 12.0603
290 5CK5 GDP 0.00000000003408 0.74566 12.2172
291 1H65 GDP 0.000002228 0.58501 12.2172
292 4WZA ACP 0.00003535 0.57635 12.2172
293 4WZA ADP 0.00003535 0.57635 12.2172
294 3IO3 ADP 0.00001057 0.54775 12.2172
295 4NE2 ADP 0.0003972 0.49649 12.2172
296 4NE2 SH2 0.0004498 0.49649 12.2172
297 1NRJ GTP 0.00000001133 0.69075 12.6582
298 4TMZ GSP 0.0000000001834 0.78269 12.6697
299 5HCN GCP 0.00000000008892 0.7682 12.6697
300 1T5C ADP 0.0000006523 0.49783 12.6697
301 5KUT GDP 0.00000001859 0.66197 13.0435
302 3ZIA ADP 0.00003191 0.51983 13.0435
303 3ZIA ATP 0.00002771 0.51667 13.0435
304 5LB3 ADP 0.000079 0.5094 13.0435
305 5LTJ ADP 0.00004043 0.50916 13.0435
306 3B7G ANP 0.0001814 0.47931 13.0435
307 1W4R TTP 0.0009231 0.46949 13.0435
308 2ORV 4TA 0.004223 0.43426 13.0435
309 4IDN GNP 0.0002507 0.41772 13.0435
310 5E5U MLI 0.006364 0.41486 13.0435
311 1TQ4 GDP 0.000000001244 0.73609 13.5747
312 1JJ7 ADP 0.0000002106 0.5091 14.0271
313 4E03 ADP 0.00000752 0.54261 14.0777
314 1JWY GDP 0.000001052 0.58862 14.1304
315 3VX3 ADP 0.000007291 0.55532 14.1304
316 4V03 ADP 0.000006937 0.54749 14.1304
317 5XDR ADP 0.00007322 0.49735 14.1304
318 1JWY ADP 0.00009336 0.49252 14.1304
319 4OI4 ATP 0.0004243 0.47866 14.1304
320 4IHQ ADP 0.00006817 0.47744 14.1304
321 2FAH GDP 0.0003617 0.47087 14.1304
322 2ZE7 AMP 0.003417 0.4387 14.1304
323 2ZE7 DST 0.003683 0.4387 14.1304
324 4TMK T5A 0.006817 0.43378 14.1304
325 4PJ3 ANP 0.00123 0.42431 14.1304
326 4WZ8 3W7 0.04103 0.40333 14.1304
327 5M04 GDP 0.000000000004749 0.78067 14.4796
328 2IL4 COA 0.005893 0.41455 14.5631
329 5VGR GDP 0.0002403 0.443 15.2174
330 3V2U ATP 0.01522 0.40261 15.2174
331 1Y3A GDP 0.00000001393 0.69285 15.3846
332 2OM2 GDP 0.00000001662 0.68289 15.3846
333 4YDS ATP 0.00001323 0.55532 16.2896
334 4J0Q GDP 0.00000000007543 0.73403 16.3043
335 1W0J ADP 0.00001516 0.53483 16.3043
336 3KTA AP5 0.0001393 0.49012 16.3043
337 4IOK XPO 0.0003985 0.48189 16.3043
338 4IOK ADP 0.0005135 0.48189 16.3043
339 4ZNL BEF ADP 0.0001759 0.47992 16.3043
340 1W0J ADP BEF 0.0003621 0.47561 16.3043
341 4GBM A3P 0.001528 0.45207 16.3043
342 5J1S ATP 0.0001847 0.41478 17.0732
343 2ZTS ADP 0.00008864 0.50434 17.1315
344 1WDT GTP 0.00000004363 0.65981 17.1946
345 1IWE IMP 0.0003602 0.54434 17.1946
346 5GOE GDP 0.000000003229 0.6753 17.3913
347 1B0U ATP 0.00005606 0.50846 17.3913
348 1XEX ATP 0.0002589 0.49278 17.3913
349 4ZG4 VO4 ADP 0.00009554 0.50959 18.0995
350 5IRN ADP 0.000007028 0.55033 18.4783
351 2FSH ANP 0.0009999 0.43029 18.4783
352 4WOP CTP 0.0008509 0.40865 18.4783
353 1W7J ADP BEF 0.00008136 0.50359 18.552
354 3IIJ ADP 0.0000041 0.54248 18.8889
355 4XTR ATP 0.00001741 0.54492 19.5652
356 4XTR ADP 0.00001334 0.54299 19.5652
357 1Z6T ADP 0.0000852 0.50265 19.5652
358 4XVU ATP 0.00001866 0.45493 19.5652
359 2VOH CIT 0.005068 0.4042 19.5652
360 2X77 GDP 0.0000000002076 0.75134 19.5767
361 5KSZ GCP 0.000002592 0.54999 20.6522
362 4LYA ATP 0.000007899 0.54163 20.6522
363 1V8K ANP 0.000009496 0.52693 20.6522
364 5IFS ADP 0.00004068 0.51207 20.6522
365 1QHH ATP 0.004656 0.41474 20.6522
366 1Q20 PLO 0.02315 0.40726 20.6522
367 4M9Q GNP 0.00000000007453 0.79771 20.8145
368 3DOE GTP 0.00000000006477 0.80428 20.8333
369 2KIN ADP 0.0000002609 0.51025 21
370 1UPT GTP 0.0000000001828 0.77919 21.0526
371 3AQ4 GDP 0.0000000002204 0.75015 21.1957
372 1KSH GDP 0.0000000000219 0.81902 21.5054
373 1F6B GDP 0.0000000008358 0.72365 21.7172
374 1MKY GDP 0.00000000004072 0.76348 21.7195
375 5HR5 ADP 0.0001226 0.49527 21.7391
376 3RC3 ANP 0.002008 0.41815 21.7391
377 1S7N COA 0.01037 0.40885 21.7391
378 1MR3 G3D 0.00000000004334 0.78249 22.0994
379 1HTW ADP 0.000009988 0.53696 22.1519
380 2J59 GTP 0.0000000001171 0.79199 22.2892
381 1O3Y GTP 0.0000000001178 0.79187 22.2892
382 1J2J GTP 0.0000000002631 0.7752 22.2892
383 4YLG GDP 0.0000000001804 0.76775 22.5434
384 2WIC GNP 0.000000008003 0.67872 23.0769
385 4R98 GNH 0.00000002396 0.64393 23.0769
386 1RE0 GDP 0.0000000000201 0.756 23.1707
387 1S9D GDP 0.0000000003015 0.74392 23.1707
388 4KAX GTP 0.0000000001725 0.78039 23.6686
389 3BFV ADP 0.00001552 0.5356 23.913
390 4JLV ADP 0.0002073 0.46096 23.913
391 2A5F GTP 0.0000000005848 0.76193 24
392 4DCT GDP 0.000000000128 0.76096 24.4344
393 3PCR GTP 0.000000000394 0.76682 24.6914
394 2FH5 GTP 0.0000000004839 0.75548 25
395 3EZ2 ADP 0.00006787 0.48029 25
396 5GVR LMR 0.00001638 0.40065 25
397 1M2O GNP 0.000000003658 0.7267 25.2632
398 3N5C GDP 0.000000000185 0.7668 25.3086
399 2W83 GTP 0.0000000001999 0.78089 25.4545
400 3A1S GDP 0.0000002365 0.6114 25.7919
401 2V7Q ATP 0.000009777 0.54062 28
402 2CK3 ADP 0.0003908 0.48037 28
403 2CK3 ANP 0.0004029 0.47342 28
404 2V7Q ADP 0.000174 0.47183 28
405 2WKQ GTP 0.000000008205 0.70383 28.0543
406 4QM7 GTP 0.00001153 0.52187 28.2609
407 4ZI2 GNP 0.00000000001633 0.66524 28.4211
408 4GOJ GNP 0.00000000002025 0.8246 28.5714
409 2QTV GNP 0.000000002935 0.72829 28.7425
410 2GJ8 ALF GDP 0.000000000446 0.56597 29.0698
411 2J0V GDP 0.000000001701 0.70952 29.2453
412 1FZQ GDP 0.000000000007394 0.79493 29.2818
413 5JCP GDP ALF 0.00000000666 0.62932 29.4118
414 1YZG GDP 0.000000000798 0.72457 29.6089
415 1KK8 BEF ADP 0.0000815 0.50355 30.4348
416 1B7T ADP 0.0001877 0.48144 30.4348
417 1ZJ6 G3D 0.0000000003694 0.73988 30.4813
418 3T12 GDP ALF 0.000000002808 0.7228 30.8081
419 3T1O GDP 0.000000006465 0.68725 30.8081
420 3REF GDP 0.00000001307 0.69106 30.9278
421 1GWN GTP 0.0000001702 0.63512 31.2195
422 3T5G GDP 0.0000000002282 0.75421 31.4917
423 1RYH GNP 0.0000000009887 0.72485 32.0197
424 4BAS GNP 0.000000006804 0.70454 32.1608
425 1XTQ GDP 0.0000000008213 0.75158 32.2034
426 1E96 GTP 0.000000002912 0.73147 32.8125
427 1DS6 GDP 0.000000000334 0.72357 32.8125
428 1I4D GDP 0.0000000003904 0.70343 33.3333
429 2W2X GSP 0.00000001628 0.68331 33.5135
430 1OW3 GDP 0.00000002123 0.671 33.6788
431 4V0K GDP 0.000000001709 0.73957 33.7278
432 2GCO GNP 0.000000002601 0.7136 33.8308
433 2GCN GDP 0.000000007605 0.70224 33.8308
434 1NF3 GNP 0.000000006384 0.54898 33.8462
435 5DI3 GNP 0.000000000269 0.62772 34.0541
436 1A4R GNH 0.000000004214 0.70382 34.555
437 1A4R GDP 0.0000000052 0.70323 34.555
438 4D0N GDP 0.0000000002212 0.73236 34.5946
439 1CXZ GSP 0.0000000184 0.684 34.6154
440 1M7B GTP 0.00000007461 0.55882 34.7826
441 4ITR GDP 0.000000008038 0.69434 35.0785
442 2NGR GDP 0.000000003777 0.69365 35.0785
443 1GRN GDP 0.00000001072 0.68487 35.0785
444 3LXR GDP 0.000000001379 0.71819 35.1351
445 5HPY GDP 0.000000009542 0.68723 35.1351
446 2WMO GTP 0.000000003621 0.69885 35.2632
447 1G4U GDP 0.000000008625 0.6929 35.3261
448 4XOI GTP 0.00000001791 0.69059 35.5556
449 2FJU GSP 0.000000001257 0.73588 35.9551
450 4XSH GSP 0.000000004719 0.61948 36.3129
451 1KMQ GNP 0.00000000762 0.70537 36.413
452 4YC7 GNP 0.00000000794 0.70135 36.4641
453 5IRC GDP 0.0000001089 0.63068 36.5591
454 1MH1 GNP 0.000000001928 0.55256 36.5591
455 1TX4 ALF GDP 0.00000002346 0.68204 36.7232
456 4DID GDP 0.000000002871 0.69911 37.3057
457 1HE1 GDP 0.000000004092 0.60147 37.5
458 1HE1 AF3 0.003175 0.43737 37.5
459 3SBD GNP 0.000000008721 0.54625 37.9679
460 1R4A GNP 0.0000000001304 0.79321 38.7879
461 1ZD9 GDP 0.000000001336 0.73097 38.8298
462 5EE5 GTP 0.00000000002661 0.81897 39.1813
463 2G77 GDP 0.0000000001111 0.77759 39.899
464 4DKX GDP 0.00000000002435 0.77377 41.2037
465 2BCG GDP 0.000000000006894 0.83847 41.7476
466 4DSU GDP 0.00000000008977 0.80758 41.7989
467 4U5X GNP 0.000000003924 0.70897 42.1348
468 2F9L GDP 0.000000000233 0.77772 42.2111
469 1OIX GDP 0.0000000004561 0.77031 42.4084
470 3CPJ GDP 0.00000000001206 0.81799 42.5339
471 5UQW GDP 0.0000000001441 0.79113 42.8571
472 1OIV GDP 0.000000000221 0.78548 42.9319
473 5TB5 GDP 0.00000000001903 0.80396 43.2432
474 5TAR GDP 0.00000000001526 0.74935 43.2432
475 5SZH GNP 0.00000000002699 0.83287 43.3498
476 2ZEJ GDP 0.00000000122 0.75267 44.0217
477 2CJW GDP 0.000000000006989 0.79676 44.2708
478 2A9K GDP 0.0000000001147 0.77694 44.385
479 5JCZ GDP 0.000000000841 0.63907 45.2514
480 1Z06 GNP 0.00000000001963 0.83269 45.5026
481 3BC1 GNP 0.0000000001139 0.79936 45.641
482 2EW1 GNP 0.00000000002621 0.82304 45.7711
483 1VG8 GNP 0.0000000000226 0.8366 45.8937
484 1VG0 GDP 0.00000000000546 0.83397 45.8937
485 3Q85 GNP 0.000000000001231 0.82914 46.1538
486 5XCO GDP 0.00000000005353 0.78795 46.1988
487 4LX0 BEF GDP 0.0000000001758 0.79344 46.3277
488 1YZN GNP 0.0000000001309 0.79965 46.4865
489 3RWO GDP 0.0000000004778 0.76933 46.4865
490 2HV8 GTP 0.000000000474 0.7695 46.5116
491 2A5J GDP 0.000000000003353 0.83874 46.5969
492 4K81 GTP 0.0000000007177 0.76676 46.7836
493 2C5L GTP 0.0000000001088 0.80354 46.8208
494 1ZC3 GNP 0.0000000001812 0.7928 46.8571
495 2D7C GTP 0.0000000007806 0.75905 47.3054
496 5O2T GSP 0.0000000001634 0.58238 47.3373
497 1UAD GNP 0.0000000004092 0.77258 47.4286
498 5UFQ GNP 0.0000000003476 0.77599 47.5904
499 3Q72 GNP 0.00000000007664 0.73341 47.5904
500 1NVU GTP 0.00000000005738 0.817 48.1928
501 1CLU DBG 0.000000002743 0.76779 48.1928
502 2UZI GTP 0.0000000005944 0.76476 48.1928
503 5E95 GDP 0.0000000000335 0.71332 48.2143
504 1G16 GDP 0.00000000004852 0.80656 48.2353
505 1X1R GDP 0.0000000001233 0.8009 48.3146
506 3TKL GTP 0.00000000007619 0.80442 48.4694
507 1LFD GNP 0.00000000003198 0.82597 48.503
508 4C4P GNP 0.00000000008417 0.80894 48.5549
509 1NVV GNP 0.00000000002271 0.8365 48.7952
510 3KUD GDP 0.00000000009079 0.78983 48.7952
511 1WQ1 GDP 0.0000000001742 0.78375 48.7952
512 1U8Z GDP 0.0000000001856 0.78244 48.8095
513 1Z0J GTP 0.0000000002641 0.78488 48.8235
514 1KY3 GDP 0.0000000001041 0.77455 48.9011
515 1YVD GNP 0.0000000001015 0.80178 49.1124
516 3DDC GNP 0.00000000004539 0.82193 49.3976
517 2HT6 GDP 0.000000000002403 0.79425 49.4253
518 2FFQ GSP 0.0000000003109 0.78144 49.7076
519 3TNF GNP 0.00000000004069 0.82741 50
520 1Z0A GDP 0.000000000008431 0.82027 50
521 4LHW GNP 0.0000000002176 0.78581 50
522 4KVG GTP 0.0000000002945 0.77947 50
523 3QBT GNP 0.00000000001734 0.62129 50
Pocket No.: 2; Query (leader) PDB : 3GJ8; Ligand: GDP; Similar sites found: 5
This union binding pocket(no: 2) in the query (biounit: 3gj8.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3NDJ SAH 0.04787 0.4038 7.6087
2 3NDJ JHZ 0.04787 0.4038 7.6087
3 4KOT CE3 0.04037 0.40012 7.6087
4 4YSX FAD 0.04452 0.40148 15.4255
5 1BXG NAD 0.01289 0.41366 21.7391
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