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Receptor
PDB id Resolution Class Description Source Keywords
3GMB 2.1 Å EC: 1.-.-.- CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC OXYGENASE MESORHIZOBIUM LOTI FLAVIN MONOOXYGENASE OXIDOREDUCTASE
Ref.: STRUCTURE OF THE PLP DEGRADATIVE ENZYME 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGEN MESORHIZOBIUM LOTI MAFF303099 AND ITS MECHANISTIC IMPLICATIONS. BIOCHEMISTRY V. 48 4139 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FAD A:400;
B:400;
Valid;
Valid;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GMB 2.1 Å EC: 1.-.-.- CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC OXYGENASE MESORHIZOBIUM LOTI FLAVIN MONOOXYGENASE OXIDOREDUCTASE
Ref.: STRUCTURE OF THE PLP DEGRADATIVE ENZYME 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGEN MESORHIZOBIUM LOTI MAFF303099 AND ITS MECHANISTIC IMPLICATIONS. BIOCHEMISTRY V. 48 4139 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 318 families.
1 3GMB - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 280 families.
1 3GMB - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 3GMB - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GMB; Ligand: FAD; Similar sites found with APoc: 669
This union binding pocket(no: 1) in the query (biounit: 3gmb.bio3) has 32 residues
No: Leader PDB Ligand Sequence Similarity
1 3LKZ SFG 0.934579
2 4Z0H NAD 1.1976
3 1O75 PDX PDX 1.20482
4 2FR1 NDP 1.23457
5 1KOL NAD 1.25628
6 1KJ8 GAR 1.27877
7 3H9E NAD 1.44509
8 5FJN BE2 1.44578
9 5FJN FAD 1.44578
10 4HA6 FAD 1.44578
11 2RGH FAD 1.44578
12 2VTD LKM 1.44578
13 1P77 ATR 1.47059
14 2WD7 NAP 1.49254
15 1J0X NAD 1.50602
16 1ELI PYC 1.54242
17 1YJQ NAP 1.65016
18 1PJS NAD 1.68675
19 4XQC NAD 1.68675
20 4XQC 13D 1.68675
21 1T9D P22 1.68675
22 1P31 EPU 1.68675
23 5UR0 NAD 1.7192
24 3LST SAH 1.72414
25 1RM4 NDP 1.78042
26 4NTC FAD 1.79104
27 2Q1S NAI 1.85676
28 5UAV TFB 1.86335
29 5UAV NDP 1.86335
30 4LWP SAH 1.90217
31 2CDU FAD 1.92771
32 4MIG G3F 1.92771
33 5ZYN FAD 1.92771
34 2CDU ADP 1.92771
35 4EDF UPG 1.92771
36 3X0D SAH 1.92771
37 5MPT SAH 1.93237
38 5AYV KPL 1.94175
39 5AYV NAP 1.94175
40 2I3G NAP 1.98864
41 1SB8 UD2 1.98864
42 1SB8 NAD 1.98864
43 4RPL FAD 2.00501
44 4RPL 3UC 2.00501
45 2GN4 UD1 2.03488
46 2GN4 NDP 2.03488
47 4JNA FAD 2.05882
48 3L4S NAD 2.08333
49 3L4S 3PG 2.08333
50 1Z0N BCD 2.08333
51 1DSS NAD 2.1021
52 2VYN NAD 2.1148
53 2PZM UDP 2.12121
54 2PZM NAD 2.12121
55 1GAD NAD 2.12121
56 2EG5 SAH 2.15054
57 4TQG NDP 2.16718
58 5WGR FAD 2.16867
59 1BZL GCG 2.16867
60 1BZL FAD 2.16867
61 2JHP SAH 2.16867
62 3OJO NAD 2.16867
63 5XWV NDP 2.16867
64 1V8B NAD 2.16867
65 5XWV 8H6 2.16867
66 1RM0 NAI 2.16867
67 1OMO NAD 2.17391
68 2FWP ICR 2.18579
69 4CJX NAP 2.19436
70 1NYT NAP 2.21402
71 1KEW NAD 2.21607
72 1KEW TYD 2.21607
73 3CIF G3H 2.22841
74 3CIF NAD 2.22841
75 5LD5 NAD 2.23464
76 1FWV SGA MAG FUC 2.23881
77 3T7S SAM 2.23881
78 1BXG NAD 2.24719
79 5JY6 NAD 2.24719
80 1BW9 NAD 2.24719
81 1C1X NAD 2.25352
82 1BXK NAD 2.25352
83 2HK1 FUD 2.26537
84 4NEC SAH 2.27273
85 3GFB NAD 2.28571
86 3WBF API 2.29508
87 3WBF NAP 2.29508
88 1OC2 NAD 2.29885
89 1OC2 TDX 2.29885
90 5X9D 80F 2.30263
91 1YXM ADE 2.31023
92 2VT3 ATP 2.32558
93 4XDZ NDP 2.33236
94 3QJ4 FAD 2.33918
95 3WLE NAD 2.34604
96 5YEC ATP 2.35294
97 3B1J NAD 2.35988
98 3B20 NAD 2.35988
99 3NYC IAR 2.3622
100 3NYC FAD 2.3622
101 4YCA NDP 2.38095
102 2YX1 SFG 2.38095
103 2VHW NAI 2.38727
104 3H8V ATP 2.39726
105 2AOT SAH 2.39726
106 1J49 NAD 2.4024
107 1MO9 KPC 2.40964
108 1MO9 FAD 2.40964
109 1UWK NAD 2.40964
110 1UWK URO 2.40964
111 1GZ4 ATP 2.40964
112 5WP5 SAH 2.40964
113 1O5I NAD 2.40964
114 4RDH AMP 2.43056
115 4RDI ATP 2.43056
116 3JQA NAP 2.43056
117 3BMN NAP 2.43056
118 3JQB NAP 2.43056
119 3BMO NAP 2.43056
120 4CM4 NAP 2.43056
121 3BMQ NAP 2.43056
122 1LUA NAP 2.43902
123 2GZ3 NAP 2.45902
124 1E7S NAP 2.49221
125 5K4W NAI 2.49221
126 3C1O NAP 2.49221
127 5K4W THR 2.49221
128 1A5Z NAD 2.50784
129 1EBF NAD 2.51397
130 4D79 ATP 2.53623
131 3H5N ATP 2.54958
132 3VPH NAD 2.58065
133 1GUZ NAD 2.58065
134 3VPH OXM 2.58065
135 2DFV NAD 2.59366
136 2B4R AES 2.6087
137 2B4R NAD 2.6087
138 2A8X FAD 2.6506
139 2GVC FAD 2.6506
140 2GV8 FAD 2.6506
141 1VQW FAD 2.6506
142 2XVE FAD 2.6506
143 5MBX SP5 2.6506
144 5MBX FAD 2.6506
145 3X0V FAD 2.6506
146 4YNU FAD 2.6506
147 4YNU LGC 2.6506
148 1DJN ADP 2.6506
149 5FA5 MTA 2.6506
150 4GQB 0XU 2.6506
151 1Z45 NAD 2.6506
152 2GV8 NDP 2.6506
153 4RQU NAD 2.66667
154 5N6C NAD 2.66667
155 2C29 NAP 2.67062
156 4BVA NDP 2.68657
157 5BVA FAD 2.68949
158 2YVF NAD 2.69608
159 2YVF FAD 2.69608
160 1I8T FAD 2.7248
161 3DXY SAM 2.75229
162 4M52 M52 2.7897
163 4M52 FAD 2.7897
164 1ZQ9 SAM 2.80702
165 1EZ4 NAD 2.83019
166 3B6O TMP 2.83401
167 3DMH SAM 2.88714
168 2GMH FAD 2.89157
169 1ZK7 FAD 2.89157
170 1FEC FAD 2.89157
171 3NKS FAD 2.89157
172 2XVF FAD 2.89157
173 2IZ1 ATR 2.89157
174 3GDN HBX 2.89157
175 3GDN FAD 2.89157
176 4J1Q NDP 2.89157
177 1E5Q NDP 2.89157
178 2UYQ SAM 2.90323
179 4R5M NAP 2.92553
180 4R5M 4NO 2.92553
181 5KMS FAD 2.96296
182 5KMS NAD 2.96296
183 4L8V NAP 2.96736
184 1W73 NAP 2.98013
185 1W8D NAP 2.98013
186 1P1C SAH 3.01508
187 3LU1 NAD 3.02198
188 4DMG SAM 3.05344
189 2NU8 COA 3.09278
190 5N5D SAM 3.09735
191 1Q1R FAD 3.13253
192 1H82 FAD 3.13253
193 1H82 GZZ 3.13253
194 5BJX NAD 3.13253
195 5BJX UDP 3.13253
196 1DLJ NAI 3.13253
197 1DLJ UGA 3.13253
198 3NJ4 AFX 3.13253
199 4UCI ADN 3.13253
200 3NJ4 NAD 3.13253
201 4HXY NDP 3.13253
202 5ZW3 SAH 3.13253
203 4EUE NAI 3.13253
204 1X87 NAD 3.13253
205 1Q9I FAD 3.15236
206 1Q9I TEO 3.15236
207 2D2I NAP 3.15789
208 1EK6 UPG 3.16092
209 1EK6 NAI 3.16092
210 1LDN NAD 3.16456
211 3WGT FAD 3.17003
212 3WGT QSC 3.17003
213 3ZNN 4WL 3.17003
214 3ZNN FAD 3.17003
215 4ZRN UPG 3.20513
216 4ZRN NAD 3.20513
217 2JHF NAD 3.20856
218 3MQ2 SAH 3.21101
219 1GV0 NAD 3.22581
220 2VDV SAM 3.25203
221 1LVL FAD 3.27511
222 1LVL NAD 3.27511
223 4B4U NAP 3.30033
224 1O6Z NAD 3.30033
225 4G5H NAP 3.30579
226 4G5H UD7 3.30579
227 5JE8 NAD 3.31126
228 4U8P UDP 3.31384
229 4U8P FDA 3.31384
230 1SAY PYR 3.3241
231 1VI2 NAD 3.33333
232 3QWI CUE 3.33333
233 5J5Z FAD 3.37349
234 3AYI FAD 3.37349
235 3AYI HCI 3.37349
236 4DSG FAD 3.37349
237 4DSG UDP 3.37349
238 2VVM FAD 3.37349
239 2VVL FAD 3.37349
240 6F3N ADN 3.37349
241 6F3N NAD 3.37349
242 6F3M NAD 3.37349
243 4D5G FAD 3.37349
244 4D5G TPP 3.37349
245 3V1U NAD 3.37349
246 5L53 NAP 3.39506
247 1LC3 NAD 3.40136
248 1T36 ORN 3.40314
249 1YKF NAP 3.40909
250 4EMI NAD 3.41463
251 4EMI FAD 3.41463
252 1KEV NDP 3.4188
253 5N2I NAP 3.44828
254 4RKX 3S9 3.44828
255 1GEE NAD 3.44828
256 1NPD NAD 3.47222
257 1NVT NAP 3.48432
258 4M37 SAH 3.49854
259 4M38 SAH 3.49854
260 1FK8 NAD 3.50195
261 2YY7 NAD 3.52564
262 4MO2 FAD 3.53261
263 4MO2 FDA 3.53261
264 4ZNO SUC 3.58209
265 2F1K NAP 3.58423
266 5OFW 9TW 3.58744
267 2Q1W NAD 3.6036
268 6BII NAP 3.6036
269 4OPC PGT 3.61446
270 4OPC FDA 3.61446
271 5U8U FAD 3.61446
272 3NTD FAD 3.61446
273 3LAD FAD 3.61446
274 3NT6 FAD 3.61446
275 3NTA FAD 3.61446
276 3G5S FAD 3.61446
277 1REO FAD 3.61446
278 2JJQ SAH 3.61446
279 5V6F MAN BMA MAN 3.62319
280 1RYI GOA 3.66492
281 1RYI FAD 3.66492
282 2YVJ FAD 3.66972
283 2YVJ NAI 3.66972
284 3HB5 NAP 3.66972
285 3A27 SAM 3.67647
286 3FG2 FAD 3.71287
287 3K5I AIR 3.72208
288 5Y8L NAD 3.72881
289 4EMJ FAD 3.73832
290 5L95 AMP 3.75
291 5Z20 NAI 3.76812
292 1F8F NAD 3.77358
293 3HDY GDU 3.77834
294 3HDY FDA 3.77834
295 3HDY FAD 3.77834
296 3LCC SAH 3.82979
297 4REP FAD 3.83838
298 3GF4 UPG 3.84615
299 3GF4 FAD 3.84615
300 4RSL FAD 3.85542
301 5HSA FAS 3.85542
302 1COY AND 3.85542
303 1COY FAD 3.85542
304 3OND NAD 3.85542
305 3OND ADN 3.85542
306 5ZBC FAD 3.85542
307 5O42 NAD 3.85542
308 5O42 BGC 3.85542
309 5O42 9JW 3.85542
310 6M7X JD7 3.85542
311 4KIB SAH 3.85542
312 1CF2 NAP 3.85757
313 1R6D NAD 3.85757
314 1R6D DAU 3.85757
315 2Q0L FAD 3.85852
316 2Q0L NAP 3.85852
317 5AOV NAP 3.86905
318 5O74 GDP 3.88889
319 1F8G NAD 3.90625
320 1L7E NAI 3.90625
321 6A46 DCM 3.90625
322 1HDG NAD 3.91566
323 4OOE NDP 3.9604
324 4OOE FOM 3.9604
325 5A96 GTP 4.01606
326 6HL7 CP 4.02299
327 3DUW SAH 4.03587
328 2A92 NAI 4.04984
329 5ZI2 NAD 4.05797
330 5ZI2 ADP 4.05797
331 2B1N LYS ALA SER VAL GLY 4.06504
332 1LTH NAD 4.07523
333 5EZ7 FAD 4.08163
334 2E5V FAD 4.09639
335 5JWC FAD 4.09639
336 1PS9 FAD 4.09639
337 4MOP 2H5 4.09639
338 1VDC FAD 4.09639
339 3K7M FAD 4.09639
340 1GPE FAD 4.09639
341 1YY5 FAD 4.09639
342 2IVD FAD 4.09639
343 1RSG FAD 4.09639
344 2R4J FAD 4.09639
345 2R4J 13P 4.09639
346 2JB2 FAD 4.09639
347 2JB2 PHE 4.09639
348 1NAA ABL 4.09639
349 1NAA 6FA 4.09639
350 5YB7 FAD 4.09639
351 5YB7 ORN 4.09639
352 5M67 3D1 4.09639
353 5M67 ADE 4.09639
354 5M67 NAD 4.09639
355 1PS9 NAP 4.09639
356 1GQ2 NAP 4.09639
357 5D4V SAH 4.10448
358 1KYZ SAH 4.10959
359 1TDF FAD 4.11392
360 1TDF NAP 4.11392
361 1UDB UFG 4.14201
362 1UDB NAD 4.14201
363 4USR FAD 4.15512
364 3CMC NAD 4.19162
365 2DBZ NAP 4.19162
366 4D3F NAP 4.19355
367 1RP0 AHZ 4.22535
368 1CER NAD 4.22961
369 3VY6 BGC BGC 4.25532
370 3A06 NDP 4.25532
371 3OZ2 FAD 4.28212
372 4QTU SAM 4.32692
373 2AQJ FAD 4.33735
374 2AQJ TRP 4.33735
375 4JDR FAD 4.33735
376 5TS5 FAD 4.33735
377 2YG3 FAD 4.33735
378 5EB4 FAD 4.33735
379 3G89 SAM 4.41767
380 1NM5 NAD 4.4335
381 3ITJ FAD 4.43787
382 3ITJ CIT 4.43787
383 3GGO ENO 4.4586
384 3GGO NAI 4.4586
385 2B5W NAP 4.48179
386 5X20 NAD 4.48718
387 3BAZ NAP 4.5045
388 5DNK SAH 4.51264
389 3HAD NAD 4.54545
390 2FZW NAD 4.55764
391 4AT0 FAD 4.57831
392 3S5W FAD 4.57831
393 4IV9 FAD 4.57831
394 3S5W NAP 4.57831
395 5ZI9 FLC 4.61538
396 2G5C NAD 4.62633
397 2CDC XYP 4.64481
398 2CDC XYS 4.64481
399 2CDC NAP 4.64481
400 5TWB FAD 4.65116
401 3QMN A3P 4.65116
402 1JG3 ADN 4.68085
403 1C0I BE2 4.6832
404 1C0I FAD 4.6832
405 5ERG SAM 4.69974
406 3SJ7 NDP 4.7619
407 1Z82 NDP 4.77612
408 3ORF NAD 4.78088
409 1V59 FAD 4.81928
410 3SQP FAD 4.81928
411 2NPX NAD 4.81928
412 2NPX FAD 4.81928
413 4AP3 FAD 4.81928
414 4AP3 NAP 4.81928
415 6F97 FAD 4.81928
416 1MUU NAD 4.81928
417 1MV8 NAD 4.81928
418 3SSO SAH 4.81928
419 5Z21 NAI 4.81928
420 1V59 NAD 4.81928
421 1VM6 NAD 4.82456
422 2IDO TMP 4.83871
423 5N0J FAD 4.8433
424 2HMT NAI 4.86111
425 6FLZ MMA 4.86111
426 3GWZ SAH 4.87805
427 3FPZ AHZ 4.90798
428 2PV7 NAD 5.03356
429 5F8F SFG 5.03979
430 4ZCC NAI 5.05952
431 4ZCC FAD 5.05952
432 4C3Y FAD 5.06024
433 6FP4 E1T 5.06024
434 6FP4 FAD 5.06024
435 4C3Y ANB 5.06024
436 1ZGS XMM 5.06024
437 6A0S NDP 5.06024
438 6A0S HSE 5.06024
439 4XFR CIT 5.06024
440 1CDO NAD 5.08021
441 3GRU AMP 5.08475
442 4KOA NDP 5.1051
443 1KYQ NAD 5.10949
444 1V6A TRE 5.12048
445 2Q46 NAP 5.13834
446 6GAR FAD 5.15759
447 2OOR NAD 5.17241
448 3B1F NAD 5.17241
449 1UXG NAD 5.17799
450 1UXG FUM 5.17799
451 1HYH NAD 5.17799
452 2DT5 NAD 5.21327
453 5NM7 GLY 5.26316
454 2C5A NAD 5.27704
455 2C5A GDC 5.27704
456 6AA8 NAD 5.29801
457 4YKG NAD 5.3012
458 4YKG FAD 5.3012
459 5I39 FAD 5.3012
460 1O94 ADP 5.3125
461 1YKJ PHB 5.32995
462 1YKJ FAD 5.32995
463 4GKV NAD 5.35714
464 5G6U TRP 5.36398
465 6CEP OXM 5.38922
466 6CEP NAD 5.38922
467 4J4H NAI 5.40541
468 4J4H 1J1 5.40541
469 4JK3 NAD 5.40541
470 1PZG A3D 5.43807
471 5MIT FAD 5.50459
472 5MIT NAP 5.50459
473 3WV8 ATP 5.50459
474 2RI1 GLP 5.53191
475 5KOX FAD 5.54217
476 5KOX RFP 5.54217
477 1GET FAD 5.54217
478 1GET NAP 5.54217
479 2ZXI FAD 5.54217
480 2IID PHE 5.54217
481 2IID FAD 5.54217
482 5JJR SAH 5.54217
483 5CAE COA 5.56962
484 1GZ6 NAI 5.64263
485 5EES NAP 5.66802
486 1X14 NAD 5.73566
487 1U7T TDT 5.74713
488 1E3W NAD 5.74713
489 1E6W NAD 5.76923
490 4TXI FAD 5.78313
491 1KNR FAD 5.78313
492 2BRY FAD 5.78313
493 3UCL FAD 5.78313
494 3UCL NAP 5.78313
495 3UCL CYH 5.78313
496 2ZJ1 NAD 5.78313
497 2ZJ1 ARJ 5.78313
498 4ISS TAR 5.78313
499 3CBG SAH 5.78313
500 1Y1P NMN AMP PO4 5.84795
501 1WP4 NDP 5.88235
502 2CVZ NDP 5.88235
503 1WDK NAD 5.89744
504 2DC1 NAD 5.9322
505 3V1Y NAD 5.93472
506 5JCA NDP 5.98592
507 5JCA FAD 5.98592
508 1PN0 IPH 6.0241
509 1PN0 FAD 6.0241
510 2C7G ODP 6.0241
511 2C7G FAD 6.0241
512 5G3U FDA 6.0241
513 5G3U ITW 6.0241
514 3QFA FAD 6.03448
515 1F06 NDP 6.25
516 1GTE FAD 6.26506
517 1YQZ FAD 6.26506
518 2NVK FAD 6.26506
519 2WPF WPF 6.26506
520 2WPF FAD 6.26506
521 2NVK NAP 6.26506
522 5OC1 FAD 6.26506
523 1O0S NAI 6.26506
524 3ABI NAD 6.30137
525 5BUK FAD 6.50602
526 2XVM SAH 6.53266
527 5ZZ6 NAD 6.73077
528 5ZZ6 ADP 6.73077
529 5LQ8 GB 6.73759
530 1JNR FAD 6.74699
531 4D04 NAP 6.74699
532 4D04 FAD 6.74699
533 1ZBQ NAD 6.74699
534 1I36 NAP 6.81818
535 1ZEM NAD 6.87023
536 3RNM FAD 6.89655
537 4ZVV GN0 6.92771
538 4ZVV NAD 6.92771
539 9LDT NAD 6.92771
540 9LDB NAD 6.92771
541 1U3U NAD 6.95187
542 1U3U BNF 6.95187
543 3VSE SAH 7.03518
544 1YS4 NAP 7.06215
545 1FL2 FAD 7.09677
546 5TOW NAI 7.12531
547 5TOW ADN 7.12531
548 5BRT CH9 7.22892
549 5BRT FAD 7.22892
550 1D4D FAD 7.22892
551 2HK9 ATR 7.27273
552 2HK9 NAP 7.27273
553 3QV1 NAD 7.31707
554 3O9Z NAD 7.37179
555 3O9Z AKG 7.37179
556 3VYW SAM 7.46753
557 4EIP FAD 7.46988
558 4EIP K2C 7.46988
559 3AB1 FAD 7.5
560 5ODQ FAD 7.6087
561 4XDY NAI 7.69231
562 3JWH SAH 7.8341
563 2YYY NAP 7.87172
564 1E1M FAD 7.95181
565 1E1M NAP 7.95181
566 5TQZ GLC 8
567 3I7V ATP 8.20895
568 2Q7V FAD 8.30769
569 5KKA 6V0 8.33333
570 1SC6 NAD 8.41584
571 2QA1 FAD 8.43373
572 5YRL GLC GLC 8.4507
573 5YRF GLC GLC 8.4507
574 5YRJ BGC GLC 8.4507
575 5YRG BGC GLC 8.4507
576 5YRM BGC GLC 8.4507
577 5H81 NAP 8.48329
578 4YSX FAD 8.51064
579 2GJP MAL 8.6747
580 2D3N GLC GLC GLC 8.6747
581 3LZW NAP 8.73494
582 3LZW FAD 8.73494
583 2EV9 NAP 8.74525
584 2EV9 SKM 8.74525
585 3FUU ADN 8.85609
586 1JAY NAP 8.96226
587 5NA1 FAD 9.06863
588 1J5P NAD 9.09091
589 6GAS FAD 9.36556
590 1E6E FAD 9.375
591 5UAO FAD 9.39759
592 4POO SAM 9.5
593 4UP3 FAD 9.55414
594 4UP3 NDP 9.55414
595 4XUC 43G 9.63303
596 4XUC SAM 9.63303
597 3QVP FAD 9.63855
598 5TUK FAD 9.80392
599 2GUC MAN 9.83607
600 2NUO BGC 9.83607
601 2HYR BGC GLC 9.83607
602 2GUD MAN 9.83607
603 2HYQ MAN MAN 9.83607
604 2NU5 NAG 9.83607
605 2HQM FAD 9.87952
606 4TM3 FAD 9.87952
607 4USQ FAD 9.9723
608 5TUF TDC 10.0245
609 5TUF FAD 10.0245
610 1E3I CXF 10.1064
611 3L9W AMP 10.1695
612 3L9W GSH 10.1695
613 3KB6 NAD 10.1796
614 3OFK SAH 10.1852
615 4J56 FAD 10.5263
616 1EJ0 SAM 10.5556
617 2F5Z FAD 10.9375
618 1NVM NAD 11.3043
619 5GZ6 NDP 11.3497
620 5GZ6 7C3 11.3497
621 5A1T OXM 11.7302
622 5A1T NAI 11.7302
623 1LSS NAD 12.1429
624 4CQM NAP 12.2605
625 1G0N PHH 12.7208
626 1G0N NDP 12.7208
627 1D1T NAD 12.7711
628 1N1G BCP 12.8415
629 2RGO FAD 12.8501
630 5EIN NAP 12.963
631 3F8D FAD 13.3127
632 1SOW NAD 13.4146
633 3KLJ FAD 13.5065
634 4CNK FAD 13.555
635 5JCM NAD 13.7349
636 5JCM FAD 13.7349
637 5JCM ISD 13.7349
638 1PL6 572 14.0449
639 1PL6 NAD 14.0449
640 3EGI ADP 14.0777
641 1QO8 FAD 14.6988
642 5BW4 SAM 14.9813
643 2DKH 3HB 16.1446
644 2DKH FAD 16.1446
645 3AD8 NAD 16.1616
646 3AD8 PYC 16.1616
647 3AD8 FAD 16.1616
648 4USI AKG 16.2338
649 3IHG FAD 16.8675
650 1P0F NAP 17.4263
651 1Y8Q ATP 19.9422
652 3E1T FAD 22.6506
653 2VOH CIT 26.9231
654 4II2 ATP 28.9157
655 6AIN FAD 28.9474
656 5EVY FAD 32.4201
657 5EVY SAL 32.4201
658 4BJZ P3A 32.5472
659 4BJZ FAD 32.5472
660 5Y77 FAD 32.7711
661 2RGJ FAD 34.0796
662 5X68 FAD 35.0384
663 4J36 1HR 35.1807
664 4J36 FAD 35.1807
665 2Y6Q I7T 35.6784
666 2Y6Q FAD 35.6784
667 5MZI FAD 36.1446
668 5MZI FYK 36.1446
669 5EOW FAD 39.2593
Pocket No.: 2; Query (leader) PDB : 3GMB; Ligand: FAD; Similar sites found with APoc: 175
This union binding pocket(no: 2) in the query (biounit: 3gmb.bio3) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 5YF1 SFG 1.38122
2 3JQF NAP 1.38889
3 3JQG NAP 1.38889
4 5DWQ SFG 1.43266
5 5DX1 SFG 1.43266
6 5DXA SFG 1.43266
7 5DX8 SFG 1.43266
8 5DX0 SFG 1.43266
9 1SQF SAM 1.44578
10 4AZW SAM 1.44578
11 5X62 SAH 1.47783
12 1QAN SAH 1.63934
13 1H2B NAJ 1.67131
14 1T9D P25 1.68675
15 4KRG SAH 1.68675
16 1T9D 1MM 1.68675
17 1T9D FAD 1.68675
18 1T9D PYD 1.68675
19 3NDJ JHZ 1.68675
20 3NDJ SAH 1.68675
21 1P3D UMA 1.68675
22 1JQ3 AAT 1.68919
23 5HJM MTA 1.70455
24 5THY SAH 1.7284
25 3RFV 15L 1.87266
26 3RFV NAI 1.87266
27 1DL5 SAH 1.89274
28 4IF4 BEF 1.92308
29 6D6Y SAH 1.92771
30 3PT9 SAH 1.92771
31 4PIV NDP 1.92771
32 6BQ6 TER 2.1148
33 1RM0 D6P 2.16867
34 1T26 GBD 2.17391
35 1T26 NAI 2.17391
36 6ECT SAM 2.18069
37 2PT9 S4M 2.18069
38 2FWP CIT 2.18579
39 1EQ2 NAP 2.25806
40 3FXU TSU 2.29508
41 1Q0S SAH 2.3166
42 3MCT SAH 2.3569
43 5WP4 SAH 2.40964
44 3JQ7 NAP 2.43056
45 4CM8 NAP 2.43056
46 4CMI NAP 2.43056
47 3JQ9 NAP 2.43056
48 4CLR NAP 2.43056
49 3JQ8 NAP 2.43056
50 4CM9 NAP 2.43056
51 1HDR NAD 2.45902
52 3BXO SAM 2.51046
53 5AHO TLA 2.67857
54 2ZIF SAM 2.6936
55 1XTP SAI 2.75591
56 5W7K SAH 2.88462
57 5W7M SAH 2.88462
58 1VJT NAD 2.89157
59 4KRI SAH 2.89157
60 2EJU SAH 2.91005
61 4MP8 NAD 2.94985
62 4MP8 MLI 2.94985
63 3RK1 ATP 2.95359
64 1W6U NAP 2.98013
65 3G2O SAM 3.01003
66 4OBW SAM 3.11284
67 1UP7 NAD 3.13253
68 4UCI SAM 3.13253
69 1X7D NAD 3.14286
70 3GU3 SAH 3.16901
71 5KXE 6Y2 3.29218
72 1U1I NAD 3.31633
73 5E1M SAH 3.3195
74 3QWI NAP 3.33333
75 1LDM NAD 3.34347
76 1OBB NAD 3.37349
77 1H5Q NAP 3.39623
78 3U31 NAD 3.44828
79 6ECU SAH 3.48101
80 6ECW SAH 3.49206
81 3QDY A2G GAL 3.4965
82 4PTN GXV 3.49854
83 2JCB ADP 3.5
84 3WD6 GSH 3.51562
85 5FUB SAH 3.56083
86 2CVQ NDP 3.66972
87 2OUA AES 3.7234
88 5Y8L HUI 3.72881
89 3GDH SAH 3.73444
90 4YMH SAH 3.75
91 1RJW ETF 3.83481
92 1XF1 CIT 3.85542
93 5LOG SAH 3.86266
94 3DAG FEG 3.91061
95 3ESS 18N 3.91304
96 5YU3 PRO 4.06977
97 5YU3 NAD 4.06977
98 5N53 8NB 4.10256
99 1WG8 SAM 4.21053
100 1N2X SAM 4.31894
101 1OFL ASG GCD 4.33735
102 3TLJ SAH 4.33735
103 4NTO 1PW 4.34783
104 5ZXD ATP 4.3956
105 6DUB SAH 4.5045
106 4C4A SAH 4.57831
107 1QMG APX 4.57831
108 4JLS 3ZE 4.60526
109 1I9G SAM 4.64286
110 4FZV SAM 4.73538
111 2O4C NAD 4.73684
112 3A4T SFG 4.74453
113 3A25 SAM 4.98339
114 1G60 SAM 5
115 4DCM SAM 5.06667
116 5OVK NDP 5.07812
117 4YUW S4M 5.26316
118 4YUW 4JU 5.26316
119 1VE3 SAM 5.28634
120 1HKU NAD 5.30726
121 2JBH 5GP 5.33333
122 2XWL CTP 5.38117
123 3H2B SAH 5.41872
124 3MB5 SAM 5.4902
125 5E72 SAM 5.49133
126 4JJF FE9 5.52326
127 5TC4 NAD 5.6962
128 1L3I SAH 5.72917
129 5E9W SAH 5.76923
130 5TVF CGQ 5.88235
131 3C3Y SAH 5.90717
132 5O9F 9ON 5.96591
133 5O9F NAD 5.96591
134 1IM8 SAI 6.14754
135 6F9Q NAD 6.25
136 1L1E SAH 6.27178
137 4URF NAD 6.85484
138 4MDH NAD 6.88623
139 5M58 SAH 6.95652
140 1C4Q GLA GAL BGC 7.24638
141 5ODQ 9SB 7.6087
142 3C7A NAD 7.67327
143 3HVJ 705 7.69231
144 1NW5 SAM 7.83699
145 1XXR MAN 8.07453
146 3FPF MTA 8.38926
147 3FPF TNA 8.38926
148 5KVA SAM 8.63309
149 2NXE SAM 8.66142
150 6EL3 NAP 8.66142
151 2BOS GLA GAL GLC NBU 8.82353
152 2BOS GLA GAL GLC 8.82353
153 3P2E SAH 8.88889
154 3Q3C NAD 9.0301
155 1WQ1 AF3 9.03614
156 3OA2 NAD 9.1195
157 4MCC 21X 9.63855
158 2GUD BMA 9.83607
159 4CS9 AMP 10.0529
160 5GM1 SAH 10.7744
161 2FKA BEF 10.8527
162 3QH2 3NM 10.8597
163 1G6H ADP 10.8949
164 5E8J SAH 11.3636
165 2PXX SAH 11.6279
166 5T9E NAP 11.8081
167 5MGZ SAH 12.2881
168 5KOK SAH 12.5945
169 2PWY SAH 13.5659
170 2HNK SAH 13.8075
171 5NUF NAD 15.3614
172 5NUE NAD 15.3614
173 1C3V NDP 16.7347
174 1DCP HBI 19.2308
175 6F5Z SAH 37.7049
Pocket No.: 3; Query (leader) PDB : 3GMB; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3gmb.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3GMB; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3gmb.bio2) has 35 residues
No: Leader PDB Ligand Sequence Similarity
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