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Receptor
PDB id Resolution Class Description Source Keywords
3IIS 1.4 Å NON-ENZYME: BINDING STRUCTURE OF THE RECONSTITUTED PERIDININ-CHLOROPHYLL A-PROTE AMPHIDINIUM CARTERAE ALPHA HELICAL LIGHT HARVESTING PROTEIN PHOTOSYNTHESIS CARDINOFLAGELLATES CHLOROPHYLL CHLOROPLAST CHROMOPHORE LIGHARVESTING POLYPEPTIDE TRANSIT PEPTIDE
Ref.: IDENTIFICATION OF A SINGLE PERIDININ SENSING CHL-A EXCITATION IN RECONSTITUTED PCP BY CRYSTALLOGRAPHY SPECTROSCOPY. PROC.NATL.ACAD.SCI.USA V. 106 20764 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CD M:151;
M:152;
M:153;
M:154;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
112.411 Cd [Cd+2...
CL M:158;
M:159;
M:160;
M:161;
M:162;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
CLA M:601;
Part of Protein;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
J7Z M:615;
Invalid;
none;
submit data
957.193 C53 H80 O15 CC/C=...
K M:155;
M:156;
M:157;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
39.098 K [K+]
PID M:611;
M:612;
M:613;
M:614;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3IIS 1.4 Å NON-ENZYME: BINDING STRUCTURE OF THE RECONSTITUTED PERIDININ-CHLOROPHYLL A-PROTE AMPHIDINIUM CARTERAE ALPHA HELICAL LIGHT HARVESTING PROTEIN PHOTOSYNTHESIS CARDINOFLAGELLATES CHLOROPHYLL CHLOROPLAST CHROMOPHORE LIGHARVESTING POLYPEPTIDE TRANSIT PEPTIDE
Ref.: IDENTIFICATION OF A SINGLE PERIDININ SENSING CHL-A EXCITATION IN RECONSTITUTED PCP BY CRYSTALLOGRAPHY SPECTROSCOPY. PROC.NATL.ACAD.SCI.USA V. 106 20764 2009
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PID; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 NEX 0.438017 0.818182
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: 129
This union binding pocket(no: 1) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
1 2WOR 2AN None
2 4V1F BQ1 None
3 3KPE TM3 None
4 3RV5 DXC None
5 1R6N 434 None
6 1DTL BEP None
7 4F4S EFO None
8 5N26 CPT None
9 5CHR 4NC None
10 1UO4 PIH None
11 4V3I ASP LEU THR ARG PRO None
12 1RV1 IMZ None
13 2VWA PTY None
14 6BMS POV None
15 5MWE TCE None
16 2W3L DRO None
17 2PRG BRL None
18 5M36 9SZ None
19 2RKN LP3 None
20 3LEO GSH None
21 4WG0 CHD None
22 4UCC ZKW 1.3245
23 3OLL EST 1.98676
24 1YYE 196 1.98676
25 3ET3 ET1 1.98676
26 1U3R 338 1.98676
27 2YJD YJD 1.98676
28 3P0K FAD 1.98676
29 2IXE ATP 1.98676
30 1NF8 BOG 2.64901
31 5C1M OLC 2.64901
32 5C1M CLR 2.64901
33 4O4Z N2O 2.64901
34 1XVB 3BR 2.64901
35 1ZED PNP 3.31126
36 4RYV ZEA 3.31126
37 1M2Z BOG 3.31126
38 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 3.31126
39 3UST FAD 3.31126
40 4LSJ LSJ 3.31126
41 1FX8 BOG 3.97351
42 6BR9 6OU 3.97351
43 6BR8 6OU 3.97351
44 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 3.97351
45 4QO5 NAG 3.97351
46 6BR8 PGV 3.97351
47 4URF 1PS 3.97351
48 3IX9 MTX 3.97351
49 5OSW AE4 3.97351
50 4F06 PHB 3.97351
51 5V4R MGT 4.63576
52 5CX6 CDP 4.63576
53 4WGF HX2 4.63576
54 1UUY PPI 4.63576
55 3FAL REA 4.63576
56 5IUY BOG 4.63576
57 3IA4 MTX 4.63576
58 3ET1 ET1 4.63576
59 2YLD CMO 4.72441
60 5OCA 9QZ 5.29801
61 1TV5 N8E 5.29801
62 2CIX CEJ 5.29801
63 3NMV PYV 5.29801
64 4U8P UDP 5.96026
65 4MGA 27L 5.96026
66 6C1R EFD 5.96026
67 3R9V DXC 5.96026
68 4MG9 27K 5.96026
69 4TV1 36M 5.96026
70 5HYR EST 5.96026
71 4MG8 27J 5.96026
72 5DXE EST 5.96026
73 5WGD EST 5.96026
74 2BJ4 OHT 5.96026
75 2QA8 GEN 5.96026
76 3UUD EST 5.96026
77 6GPC ARG 6.34921
78 1E4I NFG 6.62252
79 3KO0 TFP 6.93069
80 3TDC 0EU 7.28477
81 5AZC PGT 7.28477
82 4RW3 TDA 7.28477
83 5LX9 OLB 7.28477
84 5K53 STE 7.28477
85 6CB2 OLC 7.94702
86 5V3Y 5V8 7.94702
87 3SQP 3J8 7.94702
88 3E70 GDP 7.94702
89 4RC8 STE 7.94702
90 5K52 OCD 7.94702
91 2BCG GER 8.60927
92 3X01 AMP 8.60927
93 4EIL FOL 8.60927
94 1I0B PEL 8.60927
95 5LWY OLB 9.2437
96 2GWH PCI 9.27152
97 2HHP FLC 9.27152
98 3EWK FAD 9.27152
99 5VRH OLB 9.93377
100 3G58 988 9.93377
101 5TDF ADE 10.596
102 4G86 BNT 11.2583
103 4MRP GSH 11.2583
104 1XMY ROL 11.2583
105 1XM4 PIL 11.2583
106 6B21 C9V 11.2583
107 1XMU ROF 11.2583
108 1GEG GLC 11.9205
109 1ON3 DXX 11.9205
110 3E3U NVC 11.9205
111 4OGQ 7PH 12.5828
112 4OGQ 1O2 12.5828
113 4OGQ SQD 12.5828
114 4OGQ 2WD 12.5828
115 2IRY DGT 12.5828
116 5N8V KZZ 13.0435
117 5UGW GSH 13.245
118 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 13.9073
119 1Q7E MET 14.5695
120 2Q8G AZX 16.5563
121 3ZQE DXC 17.8808
122 2RH1 CLR 18.543
123 5Z84 CHD 19.2053
124 5W97 CHD 19.2053
125 2Y69 CHD 19.2053
126 5ZCO CHD 19.2053
127 5Z84 TGL 19.2053
128 5W7B MYR 21.1921
129 1NU4 MLA 27.8351
Pocket No.: 2; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
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