Receptor
PDB id Resolution Class Description Source Keywords
3IIU 1.45 Å NON-ENZYME: BINDING STRUCTURE OF THE RECONSTITUTED PERIDININ-CHLOROPHYLL A-PROTE MUTANT N89L AMPHIDINIUM CARTERAE ALPHA HELICAL LIGHT HARVESTING PROTEIN PHOTOSYNTHESIS CARDINOFLAGELLATES CHLOROPHYLL CHLOROPLAST CHROMOPHORE LIGHARVESTING POLYPEPTIDE TRANSIT PEPTIDE
Ref.: IDENTIFICATION OF A SINGLE PERIDININ SENSING CHL-A EXCITATION IN RECONSTITUTED PCP BY CRYSTALLOGRAPHY SPECTROSCOPY. PROC.NATL.ACAD.SCI.USA V. 106 20764 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CD M:151;
M:152;
M:153;
M:154;
M:155;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
112.411 Cd [Cd+2...
CL M:156;
M:157;
M:158;
M:159;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
CLA M:601;
Part of Protein;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
J7Z M:615;
Invalid;
none;
submit data
957.193 C53 H80 O15 CC/C=...
PID M:611;
M:612;
M:613;
M:614;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3IIS 1.4 Å NON-ENZYME: BINDING STRUCTURE OF THE RECONSTITUTED PERIDININ-CHLOROPHYLL A-PROTE AMPHIDINIUM CARTERAE ALPHA HELICAL LIGHT HARVESTING PROTEIN PHOTOSYNTHESIS CARDINOFLAGELLATES CHLOROPHYLL CHLOROPLAST CHROMOPHORE LIGHARVESTING POLYPEPTIDE TRANSIT PEPTIDE
Ref.: IDENTIFICATION OF A SINGLE PERIDININ SENSING CHL-A EXCITATION IN RECONSTITUTED PCP BY CRYSTALLOGRAPHY SPECTROSCOPY. PROC.NATL.ACAD.SCI.USA V. 106 20764 2009
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 3IIS - PID C39 H50 O7 CC(=CC=CC=....
2 2X21 - DGD C51 H96 O15 CCCCCCCCCC....
3 2X20 - DGD C51 H96 O15 CCCCCCCCCC....
4 3IIU - PID C39 H50 O7 CC(=CC=CC=....
5 2X1Z - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PID; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 NEX 0.438017 0.818182
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3IIS; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3iis.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback