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Receptor
PDB id Resolution Class Description Source Keywords
3LM9 2.45 Å EC: 2.7.1.4 CRYSTAL STRUCTURE OF FRUCTOKINASE WITH ADP AND FRUCTOSE BOUN ACTIVE SITE BACILLUS SUBTILIS FRUCTOKINASE ADP-BINDING FRUCTOSE-BINDING STRUCTURAL GENOPSI-2 PROTEIN STRUCTURE INITIATIVE MIDWEST CENTER FOR STRGENOMICS MCSG ATP-BINDING CARBOHYDRATE METABOLISM KINASMAGNESIUM METAL-BINDING NUCLEOTIDE-BINDING POLYSACCHARIDDEGRADATION TRANSFERASE REDUCTIVELY METHYLATED
Ref.: STRUCTURAL STUDIES OF ROK FRUCTOKINASE YDHR FROM BA SUBTILIS: INSIGHTS INTO SUBSTRATE BINDING AND FRUCT SPECIFICITY. J.MOL.BIOL. V. 406 325 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP A:3001;
Valid;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
FRU A:1001;
Valid;
none;
submit data
180.156 C6 H12 O6 C([C@...
SO4 A:2001;
Invalid;
none;
submit data
96.063 O4 S [O-]S...
ZN A:302;
Part of Protein;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3LM9 2.45 Å EC: 2.7.1.4 CRYSTAL STRUCTURE OF FRUCTOKINASE WITH ADP AND FRUCTOSE BOUN ACTIVE SITE BACILLUS SUBTILIS FRUCTOKINASE ADP-BINDING FRUCTOSE-BINDING STRUCTURAL GENOPSI-2 PROTEIN STRUCTURE INITIATIVE MIDWEST CENTER FOR STRGENOMICS MCSG ATP-BINDING CARBOHYDRATE METABOLISM KINASMAGNESIUM METAL-BINDING NUCLEOTIDE-BINDING POLYSACCHARIDDEGRADATION TRANSFERASE REDUCTIVELY METHYLATED
Ref.: STRUCTURAL STUDIES OF ROK FRUCTOKINASE YDHR FROM BA SUBTILIS: INSIGHTS INTO SUBSTRATE BINDING AND FRUCT SPECIFICITY. J.MOL.BIOL. V. 406 325 2011
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3LM9 - FRU C6 H12 O6 C([C@@H]1[....
2 3OHR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3LM9 - FRU C6 H12 O6 C([C@@H]1[....
2 3OHR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3LM9 - FRU C6 H12 O6 C([C@@H]1[....
2 3OHR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Ligand no: 2; Ligand: FRU; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 FRU 1 1
2 SF6 1 1
3 LFR 1 1
4 PSV 1 1
5 SF9 1 1
6 F6P 0.564103 0.744186
7 TA6 0.564103 0.744186
8 FRU FRU 0.511111 0.888889
9 LBS 0.511111 0.888889
10 F1X 0.487805 0.744186
11 LRH 0.484848 0.882353
12 0UB 0.479167 0.888889
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3LM9; Ligand: FRU; Similar sites found with APoc: 114
This union binding pocket(no: 1) in the query (biounit: 3lm9.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 2QXL ATP 1.3245
2 4EHU ANP 1.81159
3 1G51 AMP 1.98676
4 3QFU ADP 1.98676
5 6HL7 CP 1.98676
6 2POC UD1 1.98676
7 4DHY GLC 2.31788
8 1TUU AMP 2.31788
9 1TUU PIS 2.31788
10 1TUU ADP 2.31788
11 6G3R ADP 2.31788
12 4JNE ATP 2.31788
13 3TTC ADP 2.31788
14 4B9Q ATP 2.31788
15 3ZJX BOG 2.42215
16 2E2P ADP 2.67559
17 5FPE 3TR 2.98013
18 4ISS TAR 2.98013
19 3LDQ 3P1 2.98013
20 5HWV MBN 3.07692
21 1CZA GLC 3.31126
22 5LJW ANP 3.31126
23 3WQT ANP 3.31126
24 3R7F CP 3.31126
25 5BRE 4UZ 3.97351
26 5EXW 7DT 3.97351
27 1HSR BHO 3.97351
28 2UYT ADP 3.97351
29 2UYT LRH 3.97351
30 6ASY ATP 3.97351
31 5YRJ BGC GLC 4.22535
32 5YRM BGC GLC 4.22535
33 2YKX AKG 4.30464
34 2QWO ADP 4.34783
35 4YDU ADP 4.63576
36 4AG5 ADP 4.63576
37 2V4V XYP 4.65116
38 4NAE 1GP 4.88889
39 2AGC DAO 4.93827
40 4GNI ATP 4.96689
41 1SZ2 BGC 4.96689
42 1SAZ ACP 4.96689
43 6F5W KG1 4.96689
44 1SQK ADP 5.29801
45 6B3V 7DQ 5.29801
46 6B3V ANP 5.29801
47 4Z94 ATP 5.29801
48 3MN6 ATP 5.29801
49 2A42 ATP 5.29801
50 2FXU ATP 5.29801
51 2A40 ATP 5.29801
52 2A3Z ATP 5.29801
53 3MN7 ATP 5.29801
54 4PKG ATP 5.29801
55 3SJH ATP 5.29801
56 4B1V ATP 5.29801
57 3MN5 ATP 5.29801
58 4QS9 BGC 5.29801
59 4B1X ATP 5.29801
60 2V51 ATP 5.29801
61 4B1V LAB 5.29801
62 2D1K ATP 5.29801
63 4XFR CIT 5.29801
64 3MN9 ATP 5.29801
65 4PKI ATP 5.29801
66 5YEE ATP 5.29801
67 5YPU ATP 5.29801
68 3SJH LAR 5.29801
69 2Q97 ATP 5.29801
70 4EFH ADP 5.29801
71 3U9Z ADP 5.29801
72 4H03 ATP 5.29801
73 4H03 LAR 5.29801
74 2FF3 ATP 5.33333
75 2D0O ADP 5.6
76 3WXL ADP 5.62914
77 2V7Y ADP 5.62914
78 1KXP ATP 5.62914
79 1YQT ADP 5.62914
80 3K56 IS3 5.6391
81 3U4L ATP 5.71429
82 2PBD ATP 5.7554
83 2PAV ATP 5.7554
84 1A5Z FBP 5.95611
85 5YV5 ADP 5.96026
86 3CIP ATP 6.25
87 5OBY ANP 6.29139
88 5OBU ANP 6.29139
89 4CBX ATP 6.29921
90 4CBU ATP 6.29921
91 1YAG ATP 6.4
92 5ZZA ATP 6.61157
93 1XP8 AGS 6.62252
94 4PL8 ATP 6.84932
95 5HTX ADP 7.28477
96 4CZG QH3 7.28477
97 4CZG ADP 7.28477
98 2W41 ADP 7.28477
99 2FF6 ATP 7.69231
100 5EOU ATP 7.94702
101 5A1S FLC 8.27815
102 5ZZB ATP 9.55882
103 3O8M BGC 10.596
104 3O8M GLC 10.596
105 5JIC N7E 10.6227
106 5JIC ADP 10.6227
107 4CP8 MLI 10.9272
108 1M26 GAL A2G 13.5338
109 2IVN ANP 13.5762
110 5F7R GLC GLC 22.8477
111 4B1W ATP 25
112 1WOQ BGC 26.9663
113 3VGL BGC 47.0199
114 3VGL ANP 47.0199
Pocket No.: 2; Query (leader) PDB : 3LM9; Ligand: FRU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3lm9.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3LM9; Ligand: ADP; Similar sites found with APoc: 159
This union binding pocket(no: 3) in the query (biounit: 3lm9.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 2QXL ATP 1.3245
2 2XVF FAD 1.65563
3 4EHU ANP 1.81159
4 3I3X U22 1.9305
5 3QFU ADP 1.98676
6 2GJP MAL 1.98676
7 4JNE ATP 2.31788
8 4DHY GLC 2.31788
9 5AR0 GB8 2.31788
10 1TUU AMP 2.31788
11 1TUU PIS 2.31788
12 6G3R ADP 2.31788
13 4B9Q ATP 2.31788
14 1TUU ADP 2.31788
15 3TTC ADP 2.31788
16 2HQM FAD 2.31788
17 4F06 PHB 2.31788
18 4UP4 GAL NAG 2.31788
19 5H3A D16 2.31788
20 1NVM NAD 2.31788
21 3RG9 NDP 2.5
22 3RG9 WRA 2.5
23 1NAA 6FA 2.64901
24 4MIG G3F 2.64901
25 3KFL ME8 2.64901
26 5XET ME8 2.64901
27 2E2P ADP 2.67559
28 3P7G MAN 2.73973
29 1PVN MZP 2.92553
30 2BUP ATP 2.98013
31 2BUP ADP 2.98013
32 2YCH ATP 2.98013
33 5FPE 3TR 2.98013
34 4P8K 38C 2.98013
35 4P8K FAD 2.98013
36 5FPN KYD 2.98013
37 3LDQ 3P1 2.98013
38 2X1L MET 2.98013
39 1HV9 UD1 2.98013
40 1I00 D16 3.10345
41 1I00 UMP 3.10345
42 5LJW ANP 3.31126
43 3WQT ANP 3.31126
44 6FP4 FAD 3.31126
45 2RGH FAD 3.31126
46 1OFU GDP 3.31126
47 4AUT FAD 3.31126
48 4BGB ADP 3.64238
49 4PL7 ATP 3.64238
50 1QO8 FAD 3.64238
51 2BL9 NDP 3.78151
52 5EXW 7DT 3.97351
53 4XH4 PPI 3.97351
54 4XH4 ANP 3.97351
55 6ASY ATP 3.97351
56 6EOF ADP 3.97351
57 2UYT LRH 3.97351
58 2UYT ADP 3.97351
59 2IHU TP9 3.97351
60 5LY3 ADP 4.30464
61 2C6Q NDP 4.30464
62 4ZLU 4PW 4.30464
63 4ZLU ADP 4.30464
64 1COY FAD 4.30464
65 2QWO ADP 4.34783
66 1QX4 FAD 4.37956
67 3LL5 ADP 4.41767
68 3LL5 IPE 4.41767
69 4YDU ADP 4.63576
70 4MO4 ACP 4.63576
71 5J7X FAD 4.63576
72 5V49 8WA 4.63576
73 1TL2 NDG 4.66102
74 1SAZ ACP 4.96689
75 4GNI ATP 4.96689
76 5XDT GDP 4.96689
77 5XDT MB3 4.96689
78 2FXU ATP 5.29801
79 4B1V ATP 5.29801
80 4B1V LAB 5.29801
81 4H03 ATP 5.29801
82 4H03 LAR 5.29801
83 2D1K ATP 5.29801
84 4B1X ATP 5.29801
85 3MN5 ATP 5.29801
86 4EFH ADP 5.29801
87 2V51 ATP 5.29801
88 3MN9 ATP 5.29801
89 4PKI ATP 5.29801
90 5YPU ATP 5.29801
91 3U9Z ADP 5.29801
92 5YEE ATP 5.29801
93 2Q97 ATP 5.29801
94 1SQK ADP 5.29801
95 6B3V ANP 5.29801
96 6B3V 7DQ 5.29801
97 3MN7 ATP 5.29801
98 3SJH ATP 5.29801
99 4Z94 ATP 5.29801
100 3MN6 ATP 5.29801
101 2A42 ATP 5.29801
102 2A40 ATP 5.29801
103 2A3Z ATP 5.29801
104 4PKG ATP 5.29801
105 6H3O FAD 5.29801
106 3SJH LAR 5.29801
107 4RSL FAD 5.29801
108 3AB1 FAD 5.29801
109 4Z87 5GP 5.29801
110 4CE5 PDG 5.29801
111 2FF3 ATP 5.33333
112 2D0O ADP 5.6
113 1KXP ATP 5.62914
114 3GDN FAD 5.62914
115 3GDN HBX 5.62914
116 2V7Y ADP 5.62914
117 6GAS FAD 5.62914
118 3IHG FAD 5.62914
119 3U4L ATP 5.71429
120 2PBD ATP 5.7554
121 2PAV ATP 5.7554
122 3NCQ ATP 5.88235
123 4A2B AGS 5.96026
124 4A2A ATP 5.96026
125 5MB4 NAG 5.96026
126 2KCE D16 6.06061
127 3CIP ATP 6.25
128 5OBU ANP 6.29139
129 5OBY ANP 6.29139
130 4CBU ATP 6.29921
131 4CBX ATP 6.29921
132 1YAG ATP 6.4
133 3KIF GDL 6.60377
134 5ZZA ATP 6.61157
135 1IYE PGU 6.62252
136 4PL8 ATP 6.84932
137 3VET CP 6.95364
138 3VET ADP 6.95364
139 3VET TOY 6.95364
140 2RGO FAD 6.95364
141 4J56 FAD 7.01754
142 4CZG ADP 7.28477
143 4CZG QH3 7.28477
144 2W41 ADP 7.28477
145 5HTX ADP 7.28477
146 3Q9T FAY 7.61589
147 2FF6 ATP 7.69231
148 5EOU ATP 7.94702
149 2G5C NAD 8.18505
150 5J5R IMP 8.60927
151 5J5R 6G1 8.60927
152 3TW1 AHN 8.9404
153 1JQ9 PHE LEU SER TYR LYS 9.09091
154 5ZZB ATP 9.55882
155 5JIC ADP 10.6227
156 5JIC N7E 10.6227
157 2IVN ANP 13.5762
158 4B1W ATP 25
159 3VGL ANP 47.0199
Pocket No.: 4; Query (leader) PDB : 3LM9; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3lm9.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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