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Receptor
PDB id Resolution Class Description Source Keywords
3LST 2.4 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF CALO1, METHYLTRANSFERASE IN CALICHEAMIC BIOSYNTHESIS, SAH BOUND FORM MICROMONOSPORA ECHINOSPORA CALICHEAMICIN METHYLTRANSFERASE CALO1 ENEDIYNE SAH STRUGENOMICS PSI-2 PROTEIN STRUCTURE INITIATIVE CENTER FOR ESTRUCTURAL GENOMICS CESG TRANSFERASE
Ref.: STRUCTURAL CHARACTERIZATION OF CALO1: A PUTATIVE OR ACID METHYLTRANSFERASE IN THE CALICHEAMICIN-BIOSYNT PATHWAY. ACTA CRYSTALLOGR.,SECT.D V. 67 197 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
EDO A:347;
B:347;
Invalid;
Invalid;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
SAH A:346;
B:346;
Valid;
Valid;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3LST 2.4 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF CALO1, METHYLTRANSFERASE IN CALICHEAMIC BIOSYNTHESIS, SAH BOUND FORM MICROMONOSPORA ECHINOSPORA CALICHEAMICIN METHYLTRANSFERASE CALO1 ENEDIYNE SAH STRUGENOMICS PSI-2 PROTEIN STRUCTURE INITIATIVE CENTER FOR ESTRUCTURAL GENOMICS CESG TRANSFERASE
Ref.: STRUCTURAL CHARACTERIZATION OF CALO1: A PUTATIVE OR ACID METHYLTRANSFERASE IN THE CALICHEAMICIN-BIOSYNT PATHWAY. ACTA CRYSTALLOGR.,SECT.D V. 67 197 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 3LST - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 3LST - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 3LST - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAH; Similar ligands found: 211
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 DSH 0.692308 0.914286
6 SXZ 0.692308 0.916667
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 ADN 0.573333 0.84058
19 RAB 0.573333 0.84058
20 XYA 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SMM 0.536842 0.88
28 SSA 0.536842 0.712644
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 A 0.529412 0.763158
36 LMS 0.529412 0.694118
37 AMP 0.529412 0.763158
38 5CA 0.525773 0.712644
39 ME8 0.524752 0.8125
40 M2T 0.52439 0.821918
41 6RE 0.523256 0.824324
42 GJV 0.522727 0.813333
43 AAT 0.515789 0.863014
44 LSS 0.515152 0.696629
45 KAA 0.514852 0.727273
46 J7C 0.511364 0.835616
47 A5A 0.510417 0.697674
48 SON 0.505495 0.805195
49 SRP 0.505155 0.805195
50 F0P 0.504505 0.915493
51 54H 0.5 0.681818
52 VMS 0.5 0.681818
53 ADX 0.5 0.694118
54 CA0 0.5 0.769231
55 AMO 0.5 0.805195
56 5AL 0.5 0.779221
57 KH3 0.5 0.866667
58 NVA LMS 0.49505 0.707865
59 AHX 0.49505 0.753086
60 TSB 0.494949 0.689655
61 53H 0.494949 0.674157
62 G5A 0.494737 0.712644
63 ABM 0.494382 0.74359
64 A2D 0.494382 0.74359
65 ZAS 0.494253 0.808219
66 A6D 0.490196 0.759494
67 8QN 0.49 0.779221
68 GEK 0.49 0.956522
69 GAP 0.489583 0.769231
70 AN2 0.48913 0.734177
71 A3S 0.48913 0.884058
72 S4M 0.488889 0.831169
73 SRA 0.488636 0.746835
74 LAD 0.485437 0.810127
75 52H 0.484848 0.674157
76 A12 0.483516 0.759494
77 BA3 0.483516 0.74359
78 AP2 0.483516 0.759494
79 NEC 0.483146 0.788732
80 AOC 0.483146 0.842857
81 Y3J 0.481481 0.768116
82 VRT 0.479167 0.861111
83 50T 0.478723 0.734177
84 B4P 0.478261 0.74359
85 ADP 0.478261 0.74359
86 5AS 0.478261 0.655556
87 AP5 0.478261 0.74359
88 A3N 0.477778 0.830986
89 YSA 0.476636 0.712644
90 XAH 0.476636 0.768293
91 0XU 0.473684 0.897059
92 AT4 0.473118 0.7375
93 WAQ 0.471154 0.807692
94 NSS 0.470588 0.712644
95 5AD 0.468354 0.791045
96 AU1 0.468085 0.725
97 M33 0.468085 0.734177
98 MAO 0.467391 0.797468
99 TXA 0.466667 0.759494
100 NB8 0.466667 0.775
101 A3G 0.466667 0.871429
102 3AM 0.465909 0.727273
103 DAL AMP 0.465347 0.779221
104 8X1 0.465347 0.707865
105 A3T 0.463158 0.842857
106 ATP 0.463158 0.74359
107 HEJ 0.463158 0.74359
108 ACP 0.463158 0.746835
109 7D7 0.4625 0.785714
110 LEU LMS 0.461538 0.688889
111 9ZA 0.460784 0.740741
112 9ZD 0.460784 0.740741
113 5FA 0.458333 0.74359
114 AQP 0.458333 0.74359
115 AR6 0.458333 0.766234
116 APC 0.458333 0.759494
117 APR 0.458333 0.766234
118 PRX 0.458333 0.746835
119 F2R 0.457627 0.75
120 IOT 0.456897 0.761905
121 4AD 0.456311 0.794872
122 PAJ 0.456311 0.722892
123 WSA 0.45614 0.72093
124 YAP 0.453704 0.794872
125 8PZ 0.453704 0.712644
126 FA5 0.453704 0.805195
127 ADP PO3 0.453608 0.763158
128 ADV 0.453608 0.782051
129 NVA 2AD 0.453608 0.849315
130 SAP 0.453608 0.728395
131 AGS 0.453608 0.728395
132 RBY 0.453608 0.782051
133 AD9 0.453608 0.725
134 PTJ 0.45283 0.731707
135 MHZ 0.452632 0.797468
136 00A 0.451923 0.740741
137 A3P 0.451613 0.74026
138 YLP 0.451327 0.771084
139 7MD 0.45045 0.768293
140 ALF ADP 0.45 0.707317
141 ADP ALF 0.45 0.707317
142 2VA 0.447917 0.819444
143 OOB 0.446602 0.779221
144 ANP 0.444444 0.725
145 T99 0.444444 0.7375
146 ACQ 0.444444 0.746835
147 TAT 0.444444 0.7375
148 P5A 0.443396 0.719101
149 7D5 0.443182 0.708861
150 A1R 0.442308 0.7625
151 YLC 0.439655 0.790123
152 2AM 0.438202 0.717949
153 DLL 0.438095 0.779221
154 ARG AMP 0.4375 0.759036
155 A22 0.436893 0.734177
156 D3Y 0.436893 0.859155
157 ATF 0.435644 0.716049
158 MYR AMP 0.435185 0.746988
159 80F 0.434426 0.75
160 SO8 0.434343 0.808219
161 OAD 0.433962 0.769231
162 3UK 0.433962 0.769231
163 TAD 0.433628 0.765432
164 25A 0.432692 0.74359
165 6YZ 0.431373 0.746835
166 VO4 ADP 0.431373 0.734177
167 ADP VO4 0.431373 0.734177
168 9SN 0.431193 0.731707
169 TYM 0.431034 0.805195
170 B5V 0.429907 0.759494
171 PR8 0.429907 0.8
172 ADQ 0.428571 0.746835
173 YLB 0.42735 0.771084
174 9K8 0.425926 0.67033
175 1ZZ 0.425926 0.746988
176 FYA 0.425926 0.779221
177 3OD 0.425926 0.769231
178 PPS 0.425743 0.674419
179 MAP 0.423077 0.707317
180 A2P 0.421053 0.727273
181 4YB 0.421053 0.735632
182 9X8 0.420561 0.75
183 ADP BMA 0.420561 0.746835
184 TYR AMP 0.419643 0.794872
185 5SV 0.419048 0.731707
186 3NZ 0.416667 0.824324
187 YLA 0.416667 0.771084
188 8Q2 0.415254 0.688889
189 A3R 0.415094 0.7625
190 B5Y 0.414414 0.75
191 B5M 0.414414 0.75
192 48N 0.413793 0.753086
193 LPA AMP 0.413793 0.768293
194 AYB 0.413223 0.761905
195 ACK 0.413043 0.710526
196 QQY 0.413043 0.696203
197 BIS 0.412844 0.719512
198 JB6 0.412844 0.7625
199 PAP 0.41 0.730769
200 DQV 0.408696 0.75641
201 OVE 0.408602 0.7125
202 AMP DBH 0.40708 0.746835
203 4UV 0.40708 0.75
204 3AD 0.406977 0.852941
205 AF3 ADP 3PG 0.40678 0.743902
206 OMR 0.40678 0.738095
207 LAQ 0.405172 0.768293
208 A A 0.40367 0.74359
209 7C5 0.403509 0.789474
210 7MC 0.403361 0.75
211 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3LST; Ligand: SAH; Similar sites found with APoc: 612
This union binding pocket(no: 1) in the query (biounit: 3lst.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 2BZG SAH None
2 1M26 GAL A2G None
3 5YRL GLC GLC None
4 5YRM BGC GLC None
5 1RKX NAD 0.574713
6 1XHL NDP 1.0101
7 1AOE NDP 1.04167
8 1AOE GW3 1.04167
9 1LLU NAD 1.16959
10 2PK3 A2R 1.24611
11 2HMT NAI 1.38889
12 1I2B NAD 1.43678
13 1I2B UPG 1.43678
14 1I2B USQ 1.43678
15 3H8V ATP 1.43678
16 1BZL FAD 1.43678
17 1BZL GCG 1.43678
18 2GN4 NDP 1.45349
19 2GN4 UD1 1.45349
20 4RF2 NAP 1.47059
21 1RJD SAM 1.49701
22 1GEE NAD 1.53257
23 4ZA2 NAD 1.58103
24 3GEG NAD 1.61943
25 5XDT MB3 1.62338
26 3O7W SAM 1.70068
27 5FWA J7C 1.72414
28 1U2Z SAH 1.72414
29 1FEC FAD 1.72414
30 5JCM NAD 1.72414
31 5JCM ISD 1.72414
32 3LU1 NAD 1.72414
33 4X9M FAD 1.72414
34 4XQC NAD 1.72414
35 4XQC 13D 1.72414
36 1E1M FAD 1.72414
37 1E1M NAP 1.72414
38 6B3V 7DQ 1.72414
39 6B3V ANP 1.72414
40 1RLZ NAD 1.72414
41 4D7E FAD 1.72414
42 1R37 NAD 1.72911
43 5F5N NAD 1.7301
44 5TWB FAD 1.74419
45 1NJR XYL 1.76056
46 1XKQ NDP 1.78571
47 4GKV NAD 1.78571
48 3GF4 FAD 1.79487
49 3GF4 UPG 1.79487
50 5Z75 NAD 1.83486
51 3A27 SAM 1.83824
52 1U0J ADP 1.87266
53 5GT9 NAP 1.90114
54 2YY7 NAD 1.92308
55 5OVK NDP 1.95312
56 3FRH SAH 1.97628
57 3B9Q MLI 1.98676
58 6D6Y SAH 2.01149
59 2OG2 MLI 2.01149
60 2V6G NAP 2.01149
61 5KMS FAD 2.01149
62 4TVD BGC 2.01149
63 5K4W NAI 2.01149
64 5K4W THR 2.01149
65 4DSG UDP 2.01149
66 4DSG FAD 2.01149
67 4JDR FAD 2.01149
68 1WVG APR 2.01149
69 1PHP ADP 2.01149
70 4FWE FAD 2.01149
71 1VPE ANP 2.01149
72 2ZWI C5P 2.01149
73 2Q7V FAD 2.15385
74 1MXH NAP 2.17391
75 1MXH DHF 2.17391
76 1NW5 SAM 2.19436
77 1IY8 NAD 2.24719
78 4RPL 3UC 2.25564
79 4RPL FAD 2.25564
80 1H5Q NAP 2.26415
81 4KWI NAP 2.28137
82 4KWI 1TJ 2.28137
83 2ZWA SAH 2.29885
84 2EG5 SAH 2.29885
85 2EJU SAH 2.29885
86 1E3W NAD 2.29885
87 4G5H UD7 2.29885
88 4G5H NAP 2.29885
89 1UDB UFG 2.29885
90 1UDB NAD 2.29885
91 1BXK NAD 2.29885
92 4D5G TPP 2.29885
93 4D5G FAD 2.29885
94 4U7W NDP 2.29885
95 1XHC FAD 2.29885
96 5TTJ FAD 2.29885
97 4B63 ORN 2.29885
98 4B63 NAP 2.29885
99 4B63 FAD 2.29885
100 5HSA FAS 2.29885
101 1Y8Q ATP 2.29885
102 3ICT FAD 2.29885
103 2IHK CSF 2.29885
104 2AQJ TRP 2.29885
105 2AQJ FAD 2.29885
106 3ICR FAD 2.29885
107 1D6H COA 2.29885
108 3ICS FAD 2.29885
109 1Z45 NAD 2.29885
110 1G60 SAM 2.30769
111 1E6W NAD 2.30769
112 1DMR PGD 2.30863
113 2PXX SAH 2.32558
114 3A28 NAD 2.32558
115 1E6E FAD 2.34375
116 5DOZ NDP 2.36686
117 4BLW AMP 2.42215
118 4BLW SAH 2.42215
119 4YAG NAI 2.42215
120 5L95 AMP 2.5
121 4NBT NAD 2.5
122 5BSH PRO 2.52708
123 3C3Y SAH 2.53165
124 4O0L NDP 2.54545
125 4N49 SAM 2.58621
126 1YQZ FAD 2.58621
127 5JWC FAD 2.58621
128 4J1Q NDP 2.58621
129 6F97 FAD 2.58621
130 1NAA 6FA 2.58621
131 5EJ2 NAD 2.5974
132 3VYW SAM 2.5974
133 4J56 FAD 2.63158
134 1NFQ NAI 2.69231
135 2ZIF SAM 2.6936
136 1EFV FAD 2.7451
137 1EFV AMP 2.7451
138 3ICC NAP 2.7451
139 2DPM SAM 2.8169
140 4D42 W0I 2.83688
141 4D42 NAP 2.83688
142 3SJU NDP 2.86738
143 5WP5 SAH 2.87356
144 5X62 SAH 2.87356
145 5XNC MTA 2.87356
146 4EUE NAI 2.87356
147 5OJI ISN 2.87356
148 5OJI NAP 2.87356
149 5BRT FAD 2.87356
150 5BRT CH9 2.87356
151 3GD4 FAD 2.87356
152 3GD4 NAD 2.87356
153 1TMO 2MD 2.87356
154 1XSE NDP 2.87356
155 5A1T NAI 2.87356
156 6EQS BV8 2.90909
157 3RIY NAD 2.9304
158 2EXX NAP 2.94118
159 2WPB ZZI 2.96053
160 4MDH NAD 2.99401
161 5MDH NAD 3.003
162 5DLY SAH 3.00752
163 5DLY 5D7 3.00752
164 2XVM SAH 3.01508
165 4UXM BE7 3.0303
166 2KCE D16 3.0303
167 1FWM CB3 3.0303
168 2A14 SAH 3.04183
169 3E3U NVC 3.04569
170 3GRU AMP 3.05085
171 1ZEM NAD 3.05344
172 2PWY SAH 3.10078
173 3SSO SAH 3.10263
174 3U31 NAD 3.10345
175 2OBF F83 3.11419
176 2OBF SAH 3.11419
177 2PT9 2MH 3.11526
178 2PT9 S4M 3.11526
179 3DUW SAH 3.13901
180 3OA2 NAD 3.14465
181 2EFJ SAH 3.16092
182 5YJI 8WO 3.16092
183 5YJI SAH 3.16092
184 3L9W AMP 3.16092
185 5BJX NAD 3.16092
186 5BJX UDP 3.16092
187 1GY8 NAD 3.16092
188 5WUW NAP 3.16092
189 4NTD FAD 3.16092
190 3L9W GSH 3.16092
191 2IID FAD 3.16092
192 2IID PHE 3.16092
193 2NVK FAD 3.16092
194 1REO FAD 3.16092
195 6AC9 ANP 3.16092
196 1YBH FAD 3.16092
197 1RM0 NAI 3.16092
198 1RM0 D6P 3.16092
199 2EWM NAD 3.21285
200 4URF NAD 3.22581
201 2JAH NDP 3.23887
202 2JAP NDP 3.23887
203 1R6D DAU 3.2641
204 1R6D NAD 3.2641
205 2P41 SAH 3.27869
206 2BD0 NAP 3.27869
207 5U83 ZN8 3.30189
208 3FUU ADN 3.32103
209 3A25 SAM 3.32226
210 3QWI CUE 3.33333
211 3QWI NAP 3.33333
212 4A91 GLU 3.3557
213 5MW4 5JU 3.44828
214 3QOX SAH 3.44828
215 5YF1 8V0 3.44828
216 5YF1 SFG 3.44828
217 3S1S SAH 3.44828
218 1UWK URO 3.44828
219 1UWK NAD 3.44828
220 6FDF SAH 3.44828
221 4A59 AMP 3.44828
222 2WET FAD 3.44828
223 5BVA FAD 3.44828
224 2AE2 NAP 3.46154
225 2AE2 PTO 3.46154
226 6CI9 NAP 3.4749
227 2JL1 NAP 3.48432
228 4NBW NAD 3.50195
229 3TN7 NJP 3.50195
230 3VZS NAP 3.50195
231 5GWX SAR 3.52113
232 5GWX SAM 3.52113
233 5E9W SAH 3.52564
234 2I7C AAT 3.53357
235 2Q0L FAD 3.53698
236 2NXE SAM 3.54331
237 1RPN NDP 3.58209
238 6GFK SAH 3.58566
239 2Q1W NAD 3.6036
240 5NUE NAD 3.61446
241 5NUF NAD 3.61446
242 3EVG SAH 3.63636
243 5O42 BGC 3.64964
244 5O42 NAD 3.64964
245 5O42 9JW 3.64964
246 2PX8 SAH 3.71747
247 6GKV SAH 3.73563
248 4GQB 0XU 3.73563
249 4X60 SFG 3.73563
250 4X60 3XV 3.73563
251 5HJM MTA 3.73563
252 5FA5 MTA 3.73563
253 4U8P FDA 3.73563
254 4U8P UDP 3.73563
255 3WMX NAD 3.73563
256 5MLR NAP 3.73563
257 5MLR GRQ 3.73563
258 2IVD FAD 3.73563
259 5WGR FAD 3.73563
260 1LVL NAD 3.73563
261 5CUQ NSC 3.74532
262 1X87 NAD 3.81125
263 3WDM ADN 3.83142
264 1L1E SAH 3.83275
265 1Q0S SAH 3.861
266 5OOH 9ZZ 3.8835
267 5OOH NAP 3.8835
268 5D9X GSH 3.91304
269 3U4C NDP 3.91459
270 2WSB NAD 3.93701
271 2WA2 SAM 3.98551
272 1JNR FAD 4
273 4X7Y SAH 4.0146
274 5KOK SAH 4.02299
275 5KOK R9T 4.02299
276 5KOK S9T 4.02299
277 5THY SAH 4.02299
278 5THZ SAH 4.02299
279 4UCI SAM 4.02299
280 4HXY NDP 4.02299
281 4MO2 FDA 4.02299
282 3C6K SPD 4.02299
283 4MO2 FAD 4.02299
284 3C6K MTA 4.02299
285 1OC2 NAD 4.02299
286 1OC2 TDX 4.02299
287 1V5F TPP 4.02299
288 1V5F FAD 4.02299
289 2JHP SAH 4.02299
290 3V1U NAD 4.02299
291 2V58 LZJ 4.02299
292 6F9Q NAD 4.04412
293 3I6I NDP 4.04624
294 3CTY FAD 4.07523
295 5Z2L NDP 4.08163
296 1EDO NAP 4.09836
297 4CQM NAP 4.09836
298 1VL8 NAP 4.11985
299 6BQ6 TER 4.22961
300 3LCC SAH 4.25532
301 5XLX SAH 4.25532
302 3GCZ SAM 4.25532
303 3GU3 SAH 4.31034
304 5JJR SAH 4.31034
305 1V59 NAD 4.31034
306 1GPE FAD 4.31034
307 1V59 FAD 4.31034
308 1GEG NAD 4.31034
309 3MB5 SAM 4.31373
310 2Q46 NAP 4.34783
311 4NTO 1PW 4.34783
312 1TZD ADP 4.36364
313 1GXU 2HP 4.3956
314 3FUR Z12 4.41176
315 1NM5 NAD 4.4335
316 1NM5 NAP 4.4335
317 5FUB SAH 4.45104
318 3NUG NAD 4.45344
319 5K0A FAD 4.54545
320 5ERG SAM 4.5977
321 3VSE SAH 4.5977
322 1KEW NAD 4.5977
323 2ZXI FAD 4.5977
324 3OFK SAH 4.62963
325 1OAA OAA 4.6332
326 3OID NDP 4.65116
327 2F1K NAP 4.6595
328 1G55 SAH 4.66472
329 4OBW SAM 4.66926
330 4EMJ FAD 4.6729
331 1GZ6 NAI 4.70219
332 2CUL FAD 4.74138
333 1JA9 NDP 4.74453
334 5MPT SAH 4.88506
335 4ONQ SFG 4.88506
336 1QO8 FAD 4.88506
337 4DMG SAM 4.88506
338 1SZD APR 4.88506
339 2OD9 A1R NCA 4.88506
340 2QQF A1R 4.88506
341 2GUD MAN 4.91803
342 2NUO BGC 4.91803
343 2HYR BGC GLC 4.91803
344 2GUC MAN 4.91803
345 2GUD BMA 4.91803
346 2HYQ MAN MAN 4.91803
347 2NU5 NAG 4.91803
348 3RKR NAP 4.96183
349 3HVJ 705 4.97738
350 4XUC 43G 5.04587
351 4XUC SAM 5.04587
352 2VT3 ATP 5.11628
353 1AE1 NAP 5.12821
354 4ZRN NAD 5.12821
355 4ZRN UPG 5.12821
356 1S7G APR 5.13834
357 1S7G NAD 5.13834
358 3O03 NAP 5.15464
359 4PIO SAH 5.17241
360 4PIO AVI 5.17241
361 3X0D SAH 5.17241
362 2JB2 FAD 5.17241
363 2JB2 PHE 5.17241
364 1H0H MGD 5.17241
365 1H0H 2MD 5.17241
366 6GAR FAD 5.17241
367 4W6Z 8ID 5.18732
368 1BC5 SAH 5.20446
369 1TPY SAH 5.22648
370 5T2U NAP 5.24194
371 1WG8 SAM 5.26316
372 2VDV SAM 5.28455
373 1W8D NAP 5.29801
374 1W73 NAP 5.29801
375 1Q7B NAP 5.32787
376 3ELW SAM 5.33333
377 3ELW GP3 5.33333
378 5K7U SAM 5.33333
379 2YX1 SFG 5.35714
380 2RH4 EMO 5.41516
381 1FK8 NAD 5.44747
382 1RJW ETF 5.45977
383 2VVL FAD 5.45977
384 2VVM FAD 5.45977
385 4IEE AGS 5.45977
386 3HDY FAD 5.45977
387 3HDY GDU 5.45977
388 1H2B NAJ 5.45977
389 3A4V PYR 5.45977
390 3A4V NAD 5.45977
391 6F7L FAD 5.45977
392 1KNR FAD 5.45977
393 1ORR NAD 5.4755
394 1ZBQ NAD 5.50459
395 5THQ NDP 5.51471
396 1W6U NAP 5.62914
397 5IL1 SAM 5.66038
398 3KIF GDL 5.66038
399 2DTX BMA 5.68182
400 3ZV6 NAD 5.69395
401 3ZV6 4HB 5.69395
402 6FTB M0E 5.71429
403 4YAC NAI 5.72391
404 3GDN HBX 5.74713
405 3GDN FAD 5.74713
406 4YSX FAD 5.76923
407 5MIT FAD 5.8104
408 5MIT NAP 5.8104
409 5FTW SAH 5.85938
410 2O07 SPD 5.92105
411 2O07 MTA 5.92105
412 6ARJ BW4 6.03448
413 3A4T SFG 6.03448
414 6ARJ SAH 6.03448
415 5DXA SFG 6.03448
416 5DWQ SFG 6.03448
417 5DX8 SFG 6.03448
418 5DX0 SFG 6.03448
419 5UAO FAD 6.03448
420 2Z3Y F2N 6.03448
421 2YG3 FAD 6.03448
422 2F5Z FAD 6.03448
423 5W7M SAH 6.08974
424 4M38 SAH 6.12245
425 4M37 SAH 6.12245
426 1PR9 NAP 6.14754
427 4ZCC FAD 6.25
428 2AMT 1AA 6.28931
429 4FN4 NAD 6.29921
430 4Y30 SAH 6.32184
431 4Y30 49L 6.32184
432 6EL3 NAP 6.32184
433 1RSG FAD 6.32184
434 1YY5 FAD 6.32184
435 4CNK FAD 6.32184
436 1JG3 ADN 6.38298
437 3Q87 SAM 6.4
438 3HB5 NAP 6.42202
439 1XG5 NAP 6.45161
440 2AG5 NAD 6.50407
441 1QAN SAH 6.55738
442 1I8T FAD 6.6092
443 2IV2 MGD 6.6092
444 1KPG SAH 6.62021
445 5W7K SAH 6.73077
446 1ZK4 NAP 6.77291
447 1ZK4 AC0 6.77291
448 2CFC NAD 6.8
449 3EVF SAH 6.85921
450 3EVF GTA 6.85921
451 3DXY SAM 6.88073
452 4DCM SAM 6.89655
453 2DKH 3HB 6.89655
454 2DKH FAD 6.89655
455 4M52 FAD 6.89655
456 3ABI NAD 6.89655
457 3TKA SAM 6.91643
458 2PZM NAD 6.9697
459 2PZM UDP 6.9697
460 2GAG NAD 7.07071
461 2UYQ SAM 7.09677
462 1H82 GZZ 7.18391
463 1H82 FAD 7.18391
464 1COY FAD 7.18391
465 4NBU NAI 7.2
466 1M2K APR 7.22892
467 1XCL SAH 7.23404
468 1U7T TDT 7.27969
469 3BGD SAH 7.30769
470 3BGD PM6 7.30769
471 3VC1 SAH 7.37179
472 3VC1 GST 7.37179
473 1IM8 SAI 7.37705
474 4ITU 1HS 7.43494
475 4ITU NAI 7.43494
476 5N0J FAD 7.47126
477 5VN0 FAD 7.47126
478 5VN0 NAI 7.47126
479 1EU1 MGD 7.47126
480 2BRY FAD 7.47126
481 3AY6 NAI 7.47126
482 4TXI FAD 7.47126
483 2HQM FAD 7.47126
484 6B92 SAH 7.48299
485 4POO SAM 7.5
486 5FEU NAP 7.56014
487 1O97 AMP 7.57576
488 1O97 FAD 7.57576
489 1BDB NAD 7.58123
490 5OVL NAP 7.66667
491 3NDJ SAH 7.75862
492 3NDJ JHZ 7.75862
493 1UAY ADN 7.75862
494 2JJQ SAH 7.75862
495 4RSL FAD 7.75862
496 2BGM NAJ 7.91367
497 6BWL NAD 7.92683
498 3TLJ SAH 8.04598
499 3DMH GMP 8.04598
500 3DMH SAM 8.04598
501 4C4A SAH 8.04598
502 1JQ3 AAT 8.10811
503 5FFF 5XC 8.17121
504 5FFF NAP 8.17121
505 1WY7 SAH 8.21256
506 2DKN NAI 8.23529
507 1G8K MGD 8.27068
508 3K7M FAD 8.35267
509 1KPH SAH 8.36237
510 3FPF TNA 8.38926
511 3FPF MTA 8.38926
512 3FZG SAM 8.5
513 1P1C SAH 8.54271
514 5WP4 SAH 8.62069
515 4J7U YTZ 8.68056
516 4J7U NAP 8.68056
517 3SJ7 NDP 8.73016
518 5J60 FAD 8.75
519 3AD8 NAD 8.86699
520 5E8J SAH 9.09091
521 2C6Q NDP 9.11681
522 1SB8 UD2 9.1954
523 1SB8 NAD 9.1954
524 4Z24 FAD 9.1954
525 3RNM FAD 9.1954
526 1JJV ATP 9.2233
527 6H3O FAD 9.48276
528 3S5W FAD 9.48276
529 1ZK7 FAD 9.48276
530 1G0N PHH 9.54064
531 1G0N NDP 9.54064
532 1N2X SAM 9.63455
533 1O5I NAD 9.63855
534 1DJL NAP 9.66184
535 4GUT FAD 9.67742
536 4HSU FAD 9.67742
537 4GUS FAD 9.67742
538 3EEL 53T 9.69163
539 1Z3C SA8 9.73154
540 4L2I FAD 9.82659
541 1JQD HSM 9.93151
542 2AOT SAH 9.93151
543 1JQD SAH 9.93151
544 5E1M PRO PRO LYS ARG ILE ALA 9.95851
545 5E1M SAH 9.95851
546 2FR1 NDP 10.0575
547 3PT9 SAH 10.0575
548 5JAQ NAI 10.0985
549 6DUB SAH 10.3604
550 5C2N NAG 10.4167
551 1NV8 SAM 10.5634
552 1NV8 MEQ 10.5634
553 3JWH SAH 10.5991
554 4FZV SAM 10.6322
555 5DF1 NAP 10.6322
556 5DF1 58X 10.6322
557 5EB4 FAD 10.6322
558 2XYQ SAH 10.6557
559 1D4O NAP 10.8696
560 1DL5 SAH 11.041
561 3MAG SAH 11.0749
562 1PNO NAP 11.1111
563 5ZYN FAD 11.2069
564 2RAB FAD 11.2069
565 1R27 MGD 11.2069
566 3MCT SAH 11.4478
567 5M58 SAH 11.7391
568 4AZW SAM 11.7816
569 5ZW3 SAH 11.7816
570 4II2 ATP 12.2699
571 4IWN GEK 12.6638
572 4YUW 4JU 12.8289
573 4YUW S4M 12.8289
574 1I1N SAH 13.7168
575 3GDH SAH 14.5228
576 4FC7 NAP 14.8014
577 4FC7 COA 14.8014
578 1YXM ADE 14.8515
579 4M73 SAH 15.1335
580 4M73 M72 15.1335
581 3G89 SAM 15.261
582 2OOR TXP 15.5172
583 1R18 SAH 16.2996
584 3G2O SAM 16.7224
585 5MGZ SAH 16.9492
586 4QTU SAM 17.3077
587 4R6W PC 17.4419
588 4R6W SAH 17.4419
589 1LSS NAD 19.2857
590 3EGI ADP 19.9029
591 5W7R SAH 20.4023
592 5W7R 9Z7 20.4023
593 1EJ0 SAM 21.1111
594 2FK8 SAM 21.6981
595 5DM1 SAH 21.7228
596 5DM1 5D7 21.7228
597 1VE3 SAM 22.467
598 5DX1 SFG 31.5789
599 1KYZ SAH 37.6437
600 1KYZ FER 37.6437
601 3TKY SAH 38.7931
602 4A6D SAM 39.3678
603 5EEH SAH 40.2299
604 5EEH P9P 40.2299
605 3P9C SAH 41.3793
606 3I53 SAH 42.2414
607 5ICE SAH 42.8161
608 5ICE 2H4 42.8161
609 1QZZ SAM 42.8161
610 1XDS SAM 43.1034
611 3GXO SAH 43.9655
612 3GWZ SAH 43.9655
Pocket No.: 2; Query (leader) PDB : 3LST; Ligand: SAH; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3lst.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3LST; Ligand: SAH; Similar sites found with APoc: 155
This union binding pocket(no: 3) in the query (biounit: 3lst.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3K1X DBX None
2 5YRJ BGC GLC None
3 4YKG FAD 1.43678
4 1FL2 FAD 1.6129
5 5JCM FAD 1.72414
6 1ELI PYC 1.72414
7 3EYA FAD 1.72414
8 3GMB FAD 1.72414
9 5HXI 5HN 1.72414
10 5HXI FAD 1.72414
11 4REP FAD 1.72414
12 2VHW NAI 1.72414
13 3H9E NAD 1.7341
14 6DNT NAD 1.74419
15 4GLL NAD 1.78042
16 4Z0H NAD 1.79641
17 2V2V V12 1.84502
18 4IF4 BEF 1.92308
19 1GET FAD 2.01149
20 1GET NAP 2.01149
21 2CDU FAD 2.01149
22 3LZW FAD 2.10843
23 3LZW NAP 2.10843
24 6GAS FAD 2.1148
25 3G5S FAD 2.29885
26 5G3U FDA 2.29885
27 5G3U ITW 2.29885
28 3AYI FAD 2.29885
29 3AYI HCI 2.29885
30 1E3I CXF 2.29885
31 3CIF G3H 2.29885
32 3CIF NAD 2.29885
33 3X0V FAD 2.29885
34 5A3B APR 2.31023
35 1NAA ABL 2.58621
36 4USQ FAD 2.58621
37 4AT0 FAD 2.58621
38 4YNU FAD 2.87356
39 4YNU LGC 2.87356
40 4UP4 NDG 2.87356
41 5A1T OXM 2.87356
42 1U8X NAD 2.87356
43 5LAU AR6 2.88462
44 1OYJ GSH 3.0303
45 5TS5 FAD 3.16092
46 4K26 SFF 3.16092
47 4K26 NDP 3.16092
48 4K5S FAD 3.16092
49 4K5S PM0 3.16092
50 5Y1G NAD 3.16092
51 5Y1G AKB 3.16092
52 2Y6Q FAD 3.16092
53 2Y6Q I7T 3.16092
54 1PVN MZP 3.16092
55 4CNO 9PY 3.1746
56 4EA7 JB2 3.18182
57 4EA7 COA 3.18182
58 4ZNO SUC 3.28358
59 1KYQ NAD 3.28467
60 5ZZ6 NAD 3.36538
61 1DUG GSH 3.4188
62 3QVP FAD 3.44828
63 5KOX RFP 3.44828
64 5KOX FAD 3.44828
65 2B4R NAD 3.44828
66 2B4R AES 3.44828
67 1PN0 FAD 3.73563
68 1PN0 IPH 3.73563
69 3OTI TYD 3.73563
70 1LVL FAD 3.73563
71 2GV8 FAD 3.73563
72 1VQW FAD 3.73563
73 2GVC FAD 3.73563
74 2QA1 FAD 3.73563
75 1Q1R FAD 3.73563
76 1TL2 NDG 3.81356
77 5LW0 AR6 3.8961
78 3IHG FAD 4.02299
79 1EK6 NAI 4.02299
80 1EK6 UPG 4.02299
81 2WME NAP 4.02299
82 1VKO NAD 4.02299
83 2WOX NDP 4.02299
84 4USR FAD 4.02299
85 2QE4 JJ3 4.03226
86 5JCA FAD 4.21941
87 1T9D FAD 4.2836
88 5WKC FAD 4.2836
89 3LAD FAD 4.31034
90 3OZ2 FAD 4.31034
91 5U8U FAD 4.31034
92 2CVQ NDP 4.31034
93 3NTA FAD 4.31034
94 2C7G FAD 4.5977
95 2C7G ODP 4.5977
96 5MBX FAD 4.5977
97 5MBX SP5 4.5977
98 4HA6 FAD 4.5977
99 2E5V FAD 4.5977
100 3IWK NAD 4.88506
101 3AB1 FAD 4.88506
102 3CGB FAD 4.88506
103 4KGD FAD 5.17241
104 4KGD TDP 5.17241
105 5NA1 FAD 5.17241
106 4MIG G3F 5.17241
107 3KLJ FAD 5.19481
108 1T26 GBD 5.2795
109 1T26 NAI 5.2795
110 5UAV TFB 5.2795
111 3HDY FDA 5.45977
112 3E1T FAD 5.45977
113 3CH6 NAP 5.45977
114 3CH6 311 5.45977
115 2Q28 ADP 5.45977
116 2VPY MGD 5.74713
117 1U1I NAD 5.74713
118 4YT4 FE9 5.74713
119 5GWT SIN 5.7554
120 3D3W NAP 6.14754
121 3IX9 NDP 6.31579
122 3EWP APR 6.32184
123 2NPX FAD 6.6092
124 2IV2 2MD 6.6092
125 5NMX FAD 6.89655
126 5J5Z FAD 6.89655
127 4M52 M52 6.89655
128 5NMX NAP 6.89655
129 2A8X FAD 6.89655
130 5L13 6ZE 6.89655
131 5BUK FAD 6.89655
132 5WDR GNP 7.01754
133 2GAG FOA 7.07071
134 2GAG FAD 7.07071
135 2WK1 SAH 7.0922
136 6AIN FAD 7.17703
137 1COY AND 7.18391
138 5OC1 FAD 7.75862
139 3NKS FAD 8.04598
140 1KQF MGD 8.04598
141 2IVF MGD 8.33333
142 3AD8 PYC 8.86699
143 3AD8 FAD 8.86699
144 6FA4 GNP 9.24856
145 3QFA FAD 9.77011
146 5OJ7 AR6 9.79021
147 3WQQ IB3 10.3448
148 3WQQ NDP 10.3448
149 5I60 67W 10.6322
150 5XWV NDP 10.6322
151 2RAB NAD 11.2069
152 1ZQ9 SAM 11.5789
153 4CS9 AMP 11.6402
154 6FP4 E1T 13.2184
155 6FP4 FAD 13.2184
Pocket No.: 4; Query (leader) PDB : 3LST; Ligand: SAH; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3lst.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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