Receptor
PDB id Resolution Class Description Source Keywords
3MBI 1.8 Å EC: 2.7.6.1 CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP-MG2+ AND RIP HOSPHATE THERMOPLASMA VOLCANIUM PHOSPHORIBOSYL TRANSFERASE ATP ANALOG BINDING RIBOSE 5-PHOBINDING TRANSFERASE
Ref.: THE STRUCTURES OF THERMOPLASMA VOLCANIUM PHOSPHORIB PYROPHOSPHATE SYNTHETASE BOUND TO RIBOSE-5-PHOSPHAT ANALOGS. J.MOL.BIOL. V. 413 844 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP A:288;
C:286;
D:288;
B:288;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
HSX D:286;
Valid;
none;
submit data
230.11 C5 H11 O8 P C([C@...
MG A:287;
C:289;
D:287;
B:287;
Part of Protein;
Part of Protein;
Part of Protein;
Invalid;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
PO4 A:286;
B:286;
C:287;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3MBI 1.8 Å EC: 2.7.6.1 CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP-MG2+ AND RIP HOSPHATE THERMOPLASMA VOLCANIUM PHOSPHORIBOSYL TRANSFERASE ATP ANALOG BINDING RIBOSE 5-PHOBINDING TRANSFERASE
Ref.: THE STRUCTURES OF THERMOPLASMA VOLCANIUM PHOSPHORIB PYROPHOSPHATE SYNTHETASE BOUND TO RIBOSE-5-PHOSPHAT ANALOGS. J.MOL.BIOL. V. 413 844 2011
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3MBI - HSX C5 H11 O8 P C([C@@H]1[....
2 3NAG - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
3 3LPN - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 3LRT - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3MBI - HSX C5 H11 O8 P C([C@@H]1[....
2 3NAG - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
3 3LPN - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 3LRT - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3MBI - HSX C5 H11 O8 P C([C@@H]1[....
2 3NAG - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
3 3LPN - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 3LRT - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ADP; Similar ligands found: 520
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 ATP 0.9 1
3 HEJ 0.9 1
4 A2D 0.895522 0.971831
5 AQP 0.887324 1
6 5FA 0.887324 1
7 B4P 0.884058 0.971831
8 AP5 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 AD9 0.8 0.972222
22 AGS 0.8 0.945946
23 AMP MG 0.785714 0.929577
24 CA0 0.783784 0.945205
25 ADX 0.783784 0.873418
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 KG4 0.773333 0.945205
30 45A 0.763889 0.917808
31 ABM 0.763889 0.917808
32 APC 0.763158 0.958904
33 PRX 0.763158 0.893333
34 HQG 0.7625 0.985915
35 ATF 0.759494 0.958904
36 A22 0.753086 0.985915
37 ADP BEF 0.746667 0.943662
38 ADP MG 0.746667 0.943662
39 A12 0.743243 0.958904
40 AP2 0.743243 0.958904
41 SRA 0.736111 0.918919
42 ADQ 0.73494 0.945205
43 25L 0.732558 0.985915
44 5AL 0.725 0.931507
45 8LE 0.725 0.894737
46 2A5 0.717949 0.918919
47 A1R 0.714286 0.907895
48 AU1 0.714286 0.972222
49 A3R 0.714286 0.907895
50 APC MG 0.708861 0.917808
51 ATR 0.708861 0.971429
52 PAP 0.708861 0.985714
53 ATP MG 0.708861 0.943662
54 ADP PO3 0.708861 0.943662
55 8LH 0.707317 0.906667
56 SRP 0.707317 0.906667
57 7D3 0.706667 0.905405
58 JNT 0.705882 0.945205
59 OZV 0.702381 0.971831
60 25A 0.702381 0.971831
61 BEF ADP 0.7 0.917808
62 OAD 0.697674 0.945205
63 9X8 0.697674 0.92
64 8LQ 0.690476 0.906667
65 QA7 0.690476 0.894737
66 RBY 0.6875 0.932432
67 ADV 0.6875 0.932432
68 00A 0.686047 0.883117
69 5SV 0.682353 0.848101
70 OOB 0.682353 0.931507
71 8QN 0.682353 0.931507
72 3OD 0.681818 0.945205
73 BIS 0.681818 0.933333
74 ANP MG 0.674699 0.931507
75 VO4 ADP 0.674699 0.945205
76 ALF ADP 0.674699 0.87013
77 AMO 0.674419 0.932432
78 4AD 0.674419 0.92
79 PAJ 0.674419 0.884615
80 GAP 0.670732 0.893333
81 MAP 0.670588 0.945946
82 DLL 0.666667 0.931507
83 AHX 0.666667 0.896104
84 PTJ 0.662921 0.896104
85 V2G 0.662651 0.896104
86 KMQ 0.659341 0.932432
87 3UK 0.659091 0.918919
88 SON 0.658228 0.932432
89 LMS 0.653333 0.82716
90 B5V 0.651685 0.906667
91 WAQ 0.651685 0.883117
92 LAD 0.651685 0.860759
93 PR8 0.651685 0.85
94 7D4 0.65 0.905405
95 ITT 0.65 0.943662
96 G5P 0.648936 0.921053
97 RAB 0.647059 0.84507
98 XYA 0.647059 0.84507
99 ADN 0.647059 0.84507
100 ME8 0.644444 0.839506
101 TXA 0.644444 0.932432
102 NB8 0.644444 0.896104
103 FYA 0.644444 0.905405
104 1ZZ 0.644444 0.839506
105 6AD 0.642857 0.909091
106 ADP BMA 0.640449 0.918919
107 G3A 0.638298 0.921053
108 DAL AMP 0.632184 0.905405
109 AFH 0.631579 0.884615
110 9SN 0.630435 0.871795
111 9ZA 0.625 0.907895
112 DQV 0.625 0.958333
113 GTA 0.625 0.886076
114 9ZD 0.625 0.907895
115 FA5 0.623656 0.906667
116 B5M 0.623656 0.894737
117 B5Y 0.623656 0.894737
118 UP5 0.622449 0.92
119 CUU 0.621951 0.971831
120 NO7 0.62069 0.932432
121 JSQ 0.619048 0.945946
122 HFD 0.619048 0.945946
123 XAH 0.617021 0.839506
124 AV2 0.616279 0.917808
125 AOC 0.615385 0.821918
126 48N 0.612245 0.896104
127 4UV 0.610526 0.894737
128 NAX 0.606061 0.873418
129 DND 0.606061 0.932432
130 TXD 0.606061 0.907895
131 NAI 0.606061 0.907895
132 6V0 0.606061 0.896104
133 5N5 0.605634 0.819444
134 5AS 0.604938 0.77907
135 A4P 0.60396 0.843373
136 DAT 0.60241 0.905405
137 A2R 0.602273 0.985915
138 OMR 0.6 0.851852
139 TXE 0.6 0.907895
140 GA7 0.597938 0.906667
141 4UU 0.597938 0.894737
142 5CD 0.597222 0.805556
143 A4D 0.597222 0.819444
144 L3W 0.594059 0.932432
145 AP0 0.594059 0.896104
146 4TC 0.594059 0.896104
147 A3P 0.592593 0.971429
148 T5A 0.592233 0.841463
149 139 0.592233 0.873418
150 7D5 0.592105 0.878378
151 ATP A A A 0.589474 0.930556
152 ATP A 0.589474 0.930556
153 LAQ 0.585859 0.839506
154 MYR AMP 0.585106 0.817073
155 H1Q 0.583333 0.90411
156 F2R 0.580952 0.864198
157 YLP 0.58 0.819277
158 UPA 0.578431 0.907895
159 7DD 0.578313 0.985714
160 3AM 0.576923 0.929577
161 ADJ 0.576923 0.851852
162 NAD 0.575472 0.931507
163 COD 0.575472 0.811765
164 3AT 0.574713 0.971831
165 JB6 0.574468 0.883117
166 4UW 0.574257 0.860759
167 EP4 0.573333 0.753247
168 A2P 0.573171 0.957143
169 CNA 0.571429 0.932432
170 TYM 0.568627 0.906667
171 PPS 0.568182 0.873418
172 DTA 0.565789 0.786667
173 M2T 0.565789 0.734177
174 AR6 AR6 0.565657 0.917808
175 80F 0.564815 0.841463
176 A3D 0.564815 0.918919
177 3DH 0.564103 0.773333
178 G5A 0.563218 0.77907
179 YLB 0.563107 0.819277
180 YLC 0.563107 0.839506
181 AMP DBH 0.561224 0.893333
182 MTA 0.558442 0.773333
183 DTP 0.556818 0.905405
184 AHZ 0.554455 0.817073
185 NA7 0.553191 0.958904
186 IOT 0.552381 0.831325
187 ARG AMP 0.55 0.829268
188 ZAS 0.55 0.766234
189 7MD 0.55 0.8625
190 IMO 0.548781 0.929577
191 YLA 0.54717 0.819277
192 NAE 0.544643 0.894737
193 TAD 0.544554 0.884615
194 A5A 0.544444 0.807229
195 2AM 0.544304 0.943662
196 TSB 0.543478 0.819277
197 6RE 0.54321 0.759494
198 6MZ 0.542169 0.930556
199 AYB 0.542056 0.809524
200 NAQ 0.539823 0.871795
201 V3L 0.539326 0.971831
202 AF3 ADP 3PG 0.538462 0.8375
203 ALF ADP 3PG 0.538462 0.8375
204 SSA 0.538462 0.8
205 ZID 0.535088 0.918919
206 LPA AMP 0.533981 0.817073
207 NAD IBO 0.533333 0.917808
208 NAD TDB 0.533333 0.917808
209 VMS 0.532609 0.788235
210 54H 0.532609 0.788235
211 52H 0.532609 0.77907
212 BTX 0.53211 0.841463
213 A3N 0.53012 0.786667
214 J7C 0.53012 0.769231
215 5X8 0.528736 0.763158
216 BT5 0.527273 0.831325
217 53H 0.526882 0.77907
218 8X1 0.526882 0.752809
219 5CA 0.526882 0.8
220 ARU 0.526316 0.860759
221 EAD 0.525862 0.873418
222 RGT 0.525253 0.958904
223 OVE 0.52439 0.905405
224 S4M 0.52381 0.666667
225 7DT 0.522727 0.985714
226 DDS 0.522222 0.878378
227 GDP 0.522222 0.92
228 38V 0.521739 0.886076
229 AVV 0.521277 0.896104
230 NDE 0.521008 0.932432
231 LEU LMS 0.520833 0.730337
232 7MC 0.518868 0.841463
233 DSH 0.518072 0.725
234 MAO 0.517647 0.759036
235 LSS 0.515789 0.761364
236 DSZ 0.515789 0.8
237 NSS 0.515789 0.8
238 P5A 0.515464 0.744444
239 DZD 0.513514 0.884615
240 NWW 0.513158 0.760563
241 O02 0.511111 0.921053
242 NVA LMS 0.510417 0.752809
243 9K8 0.510204 0.714286
244 12D 0.509615 0.785714
245 YLY 0.508772 0.809524
246 M24 0.508772 0.85
247 P1H 0.508333 0.851852
248 5AD 0.506849 0.746479
249 GJV 0.505882 0.75
250 AMP NAD 0.504505 0.905405
251 4TA 0.504505 0.807229
252 NAJ PZO 0.504425 0.848101
253 D4F 0.504348 0.839506
254 KAA 0.5 0.752809
255 GSU 0.5 0.77907
256 71V 0.5 0.907895
257 7D7 0.5 0.743243
258 A3G 0.5 0.8
259 128 0.5 0.776471
260 NDC 0.5 0.871795
261 N0B 0.495726 0.819277
262 NJP 0.495495 0.945946
263 ODP 0.495495 0.909091
264 K3K 0.49505 0.802632
265 2SA 0.494624 0.932432
266 6C6 0.494505 0.881579
267 SFG 0.494382 0.75
268 0WD 0.491071 0.921053
269 LQJ 0.490196 0.917808
270 B1U 0.490196 0.736264
271 YSA 0.490196 0.77907
272 PO4 PO4 A A A A PO4 0.489796 0.902778
273 SAM 0.48913 0.690476
274 6IA 0.48913 0.8375
275 A7D 0.488636 0.776316
276 6FA 0.488 0.841463
277 FB0 0.487805 0.804598
278 NAJ PYZ 0.487179 0.807229
279 J4G 0.484848 0.92
280 A5D 0.483516 0.786667
281 IDP 0.483516 0.918919
282 SA8 0.483516 0.707317
283 PGS 0.483146 0.883117
284 MHZ 0.483146 0.697674
285 DA 0.482353 0.878378
286 NEC 0.482353 0.746667
287 D5M 0.482353 0.878378
288 NIA 0.481928 0.822785
289 Y3J 0.480519 0.726027
290 8PZ 0.480392 0.8
291 FAD 0.480315 0.851852
292 FAS 0.480315 0.851852
293 FDA 0.48 0.833333
294 N6P 0.479592 0.915493
295 GGZ 0.479167 0.825
296 SAI 0.478261 0.734177
297 SAH 0.478261 0.74359
298 NPW 0.477477 0.886076
299 NDP 0.477477 0.921053
300 AAM 0.476744 0.971429
301 AMZ 0.47561 0.916667
302 C2R 0.47561 0.90411
303 SMM 0.473684 0.686047
304 GTP 0.473684 0.92
305 NZQ 0.473214 0.909091
306 TXP 0.473214 0.921053
307 A3S 0.47191 0.810811
308 K3E 0.471154 0.792208
309 NWQ 0.46988 0.739726
310 SFD 0.46875 0.734043
311 AIR 0.468354 0.901408
312 AAT 0.468085 0.707317
313 EEM 0.468085 0.690476
314 7C5 0.466667 0.818182
315 Z5A 0.466667 0.77907
316 J7V 0.466667 0.833333
317 62F 0.465649 0.8625
318 N5O 0.465116 0.763158
319 HDV 0.463158 0.893333
320 KOY 0.462963 0.802632
321 FAY 0.462121 0.8625
322 DCA 0.461538 0.823529
323 A3T 0.461538 0.821918
324 ETB 0.461538 0.833333
325 A6D 0.46 0.722892
326 6K6 0.459184 0.930556
327 QXP 0.459184 0.785714
328 GEK 0.459184 0.7375
329 RFL 0.458647 0.821429
330 S7M 0.458333 0.690476
331 V47 0.458333 0.783784
332 NAP 0.458333 0.945205
333 4YB 0.457944 0.761364
334 CZF 0.457447 0.931507
335 TAP 0.454545 0.907895
336 N5A 0.454545 0.736842
337 FNK 0.454545 0.804598
338 WSA 0.454545 0.788235
339 COA 0.453782 0.823529
340 0T1 0.453782 0.823529
341 101 0.453488 0.878378
342 QBQ 0.452632 0.906667
343 DZ4 0.452632 0.881579
344 XNP 0.452174 0.873418
345 K2R 0.45098 0.88
346 NA0 0.45082 0.932432
347 7RP 0.448276 0.928571
348 K2W 0.447619 0.740741
349 GP3 0.446809 0.921053
350 TM1 0.446602 0.77381
351 APU 0.446429 0.894737
352 KL2 0.445783 0.837838
353 QXG 0.445545 0.776471
354 PUA 0.445378 0.884615
355 V1N 0.443396 0.917808
356 7RA 0.443182 0.957747
357 CAO 0.442623 0.795455
358 30N 0.442623 0.752688
359 COS 0.442623 0.804598
360 AMX 0.442623 0.833333
361 K38 0.442308 0.779221
362 QQY 0.44186 0.815789
363 ACK 0.44186 0.861111
364 649 0.441441 0.744444
365 R2V 0.441176 0.785714
366 0UM 0.44 0.698795
367 NHD 0.439655 0.905405
368 SCO 0.439024 0.823529
369 CMX 0.439024 0.823529
370 GCP 0.438776 0.896104
371 8BR 0.438202 0.906667
372 GNH 0.4375 0.907895
373 3AD 0.4375 0.805556
374 8Q2 0.4375 0.772727
375 O05 0.436893 0.843373
376 NVA 2AD 0.43617 0.759494
377 62X 0.435644 0.666667
378 K2H 0.435644 0.75641
379 ACO 0.435484 0.795455
380 FAM 0.435484 0.804598
381 FCX 0.435484 0.795455
382 9JJ 0.434783 0.8625
383 KY2 0.434343 0.731707
384 9GM 0.434343 0.896104
385 GNP 0.434343 0.896104
386 K3H 0.433962 0.75
387 NMX 0.433071 0.76087
388 MGP 0.43299 0.884615
389 26A 0.432099 0.763158
390 HAX 0.432 0.804598
391 K15 0.431373 0.682353
392 9BG 0.431034 0.896104
393 DG1 0.430894 0.921053
394 1DG 0.430894 0.921053
395 QQX 0.430233 0.805195
396 2VA 0.430108 0.8
397 S8M 0.43 0.759494
398 2MC 0.429688 0.769231
399 PLP AAD 0.428571 0.733333
400 6G0 0.428571 0.884615
401 3KK 0.428571 0.804598
402 P5F 0.428571 0.823529
403 NAD BBN 0.428571 0.841463
404 FYN 0.428571 0.823529
405 KGA 0.427481 0.744681
406 7L1 0.427419 0.795455
407 K2K 0.427184 0.7375
408 NX8 0.427083 0.716049
409 RMB 0.426966 0.873239
410 AS 0.426966 0.833333
411 FAI 0.426966 0.916667
412 KGJ 0.426357 0.752688
413 KYB 0.425743 0.731707
414 1RB 0.425287 0.885714
415 KGP 0.425197 0.729167
416 OXK 0.425197 0.804598
417 COK 0.425197 0.804598
418 SOP 0.425197 0.804598
419 MCD 0.425197 0.804598
420 CA6 0.425197 0.729167
421 YZS 0.425197 0.729167
422 G1R 0.424242 0.907895
423 CC5 0.423077 0.816901
424 SXZ 0.423077 0.710843
425 F2N 0.422535 0.813953
426 NAD CJ3 0.422222 0.811765
427 EO7 0.422222 0.788235
428 ANZ 0.422018 0.8
429 CMC 0.421875 0.804598
430 CO6 0.421875 0.804598
431 1VU 0.421875 0.795455
432 ZDA 0.421053 0.864865
433 GKE 0.420561 0.884615
434 GDC 0.420561 0.884615
435 GDD 0.420561 0.884615
436 NFD 0.420168 0.883117
437 GSP 0.42 0.873418
438 D3Y 0.42 0.789474
439 MC4 0.419847 0.76087
440 3D1 0.419753 0.773333
441 3L1 0.419753 0.773333
442 FA9 0.41958 0.864198
443 G 0.419355 0.906667
444 5GP 0.419355 0.906667
445 KB1 0.419048 0.698795
446 KY5 0.419048 0.725
447 SCD 0.418605 0.823529
448 CAJ 0.418605 0.804598
449 2BA 0.417582 0.915493
450 CMP 0.417582 0.901408
451 SO8 0.416667 0.789474
452 VRT 0.416667 0.769231
453 KFV 0.416667 0.736842
454 N01 0.416667 0.905405
455 1HE 0.415385 0.786517
456 3HC 0.415385 0.813953
457 BCO 0.415385 0.804598
458 MLC 0.415385 0.804598
459 IVC 0.415385 0.813953
460 A1S 0.415385 0.804598
461 NMN AMP PO4 0.415254 0.87013
462 2FA 0.414634 0.813333
463 MGO 0.414141 0.860759
464 FAJ 0.413793 0.831325
465 3NZ 0.413462 0.782051
466 KY8 0.413462 0.728395
467 Q34 0.412281 0.674419
468 LCV 0.412214 0.721649
469 COO 0.412214 0.804598
470 MCA 0.412214 0.795455
471 CAA 0.412214 0.813953
472 SO5 0.412214 0.721649
473 YE1 0.412214 0.813953
474 GAV 0.411765 0.884615
475 PRT 0.411215 0.931507
476 JLN 0.411111 0.890411
477 P2P 0.411111 0.902778
478 OZP 0.410714 0.728395
479 NWZ 0.410526 0.703704
480 ZZB 0.410256 0.77381
481 CNV FAD 0.410072 0.793103
482 YXR 0.409091 0.729167
483 2CP 0.409091 0.795455
484 YXS 0.409091 0.729167
485 SCA 0.409091 0.804598
486 SP1 0.409091 0.842105
487 RP1 0.409091 0.842105
488 103 0.409091 0.837838
489 PAX 0.408 0.829268
490 KYE 0.407407 0.714286
491 FAD NBT 0.407143 0.75
492 BYC 0.406015 0.804598
493 1GZ 0.406015 0.795455
494 IRC 0.406015 0.813953
495 CA8 0.406015 0.729167
496 3CP 0.406015 0.804598
497 COW 0.406015 0.795455
498 HGG 0.406015 0.804598
499 COF 0.406015 0.786517
500 2KQ 0.406015 0.786517
501 G2P 0.405941 0.884615
502 KXW 0.405405 0.707317
503 SLU 0.404959 0.770115
504 RBZ 0.404494 0.849315
505 1CZ 0.404412 0.795455
506 Q2P 0.403361 0.674419
507 COA FLC 0.403226 0.790698
508 FAQ 0.402985 0.804598
509 BCA 0.402985 0.795455
510 4CA 0.402985 0.795455
511 MTP 0.402439 0.730769
512 8OD 0.402062 0.945205
513 HZ2 0.401786 0.731707
514 CO7 0.401515 0.804598
515 ENQ 0.4 0.916667
516 GMV 0.4 0.896104
517 HXC 0.4 0.786517
518 G2R 0.4 0.884615
519 GRA 0.4 0.804598
520 HF7 0.4 0.893333
Ligand no: 2; Ligand: HSX; Similar ligands found: 40
No: Ligand ECFP6 Tc MDL keys Tc
1 RP5 1 1
2 ABF 1 1
3 HSX 1 1
4 BGP 0.8 0.902439
5 M6P 0.8 0.902439
6 G6P 0.8 0.902439
7 BG6 0.8 0.902439
8 M6D 0.8 0.902439
9 A6P 0.8 0.902439
10 AHG 0.676471 0.880952
11 4R1 0.634146 0.755102
12 GLP 0.634146 0.755102
13 RF5 0.615385 0.883721
14 50A 0.615385 0.883721
15 GRF 0.589744 0.76
16 NNG 0.565217 0.685185
17 4QY 0.553191 0.685185
18 16G 0.553191 0.685185
19 BMX 0.553191 0.685185
20 FDQ 0.547619 0.860465
21 RI2 0.534884 0.95
22 PRP 0.5 0.975
23 G16 0.5 0.860465
24 D6G 0.5 0.860465
25 N 0.47619 0.860465
26 PPC 0.469388 0.906977
27 RIB 0.441176 0.675
28 FUB 0.441176 0.675
29 AHR 0.441176 0.675
30 BDR 0.441176 0.675
31 Z6J 0.441176 0.675
32 32O 0.441176 0.675
33 IRN 0.425926 0.606557
34 QIF 0.425532 0.860465
35 FGR 0.410714 0.655172
36 TA6 0.404255 0.906977
37 AHR AHR 0.404255 0.690476
38 F6P 0.404255 0.906977
39 BNX 0.4 0.880952
40 ALX 0.4 0.880952
Similar Ligands (3D)
Ligand no: 1; Ligand: ADP; Similar ligands found: 65
No: Ligand Similarity coefficient
1 BMQ 1.0000
2 ADP ALF 0.9881
3 ADP AF3 0.9881
4 ADP VO4 0.9881
5 DGI 0.9763
6 GDP MG 0.9684
7 GDP BEF 0.9644
8 ALF GDP 0.9644
9 GDP ALF 0.9644
10 BEF GDP 0.9610
11 GDP AF3 0.9610
12 NYZ 0.9560
13 M7G 0.9527
14 GP2 0.9485
15 UDP 0.9410
16 G8D 0.9364
17 TYD 0.9340
18 CDP 0.9333
19 GCQ 0.9290
20 8GD 0.9252
21 CDP MG 0.9246
22 DUD 0.9233
23 YYY 0.9230
24 D4D 0.9127
25 KB7 0.9099
26 DUN 0.9081
27 TBD 0.9046
28 IMP 0.9020
29 IRP 0.8992
30 MGT 0.8986
31 FMP 0.8980
32 UDP UDP 0.8979
33 G3D 0.8938
34 UC5 0.8921
35 ALF 5GP 0.8902
36 7XL 0.8868
37 GTP MG 0.8843
38 XMP 0.8838
39 IMU 0.8829
40 MOD 0.8822
41 C8M 0.8795
42 A8M 0.8784
43 8OP 0.8777
44 DG 0.8750
45 DGP 0.8750
46 MSP 0.8735
47 G7M 0.8734
48 6MA 0.8734
49 6CG 0.8732
50 PFU 0.8701
51 FZT 0.8697
52 DBG 0.8693
53 DGT 0.8685
54 FZQ 0.8683
55 MZP 0.8680
56 93A 0.8679
57 S3N 0.8673
58 0RC 0.8661
59 TKW 0.8651
60 5FU 0.8637
61 FNU 0.8616
62 FZK 0.8607
63 UTP 0.8603
64 UP6 0.8572
65 NMN 0.8537
Ligand no: 2; Ligand: HSX; Similar ligands found: 550
No: Ligand Similarity coefficient
1 1X4 0.9370
2 TU0 0.9355
3 RP3 0.9340
4 8U3 0.9295
5 P80 0.9273
6 PLP 0.9261
7 MES 0.9233
8 5RP 0.9231
9 IOS 0.9222
10 STT 0.9216
11 EVF 0.9214
12 P7Y 0.9202
13 A5P 0.9200
14 DEZ 0.9191
15 DER 0.9190
16 6Q3 0.9179
17 2HC 0.9172
18 SG3 0.9171
19 61M 0.9161
20 PMP 0.9158
21 R5P 0.9156
22 R52 0.9156
23 J0Z 0.9142
24 E4P 0.9134
25 DHY 0.9134
26 3LJ 0.9133
27 FK8 0.9133
28 AX3 0.9125
29 X1P 0.9123
30 HJH 0.9121
31 F1X 0.9118
32 TCA 0.9114
33 4BY 0.9105
34 D5X 0.9099
35 DI6 0.9096
36 TX4 0.9095
37 4TP 0.9093
38 LX1 0.9090
39 XIZ 0.9089
40 PLR 0.9087
41 5OO 0.9083
42 PO6 0.9082
43 6DP 0.9076
44 0W1 0.9075
45 LXP 0.9075
46 1BN 0.9074
47 GZ2 0.9073
48 ZEC 0.9072
49 TB8 0.9060
50 I2E 0.9059
51 LSQ 0.9057
52 F06 0.9057
53 B41 0.9056
54 EYV 0.9053
55 TZM 0.9050
56 HC4 0.9050
57 DAH 0.9049
58 ESX 0.9049
59 QUS 0.9043
60 L22 0.9042
61 P81 0.9041
62 ZON 0.9038
63 DHC 0.9036
64 M6H 0.9035
65 MP5 0.9033
66 R20 0.9028
67 SEP 0.9025
68 JOV 0.9025
69 2JJ 0.9022
70 LVD 0.9019
71 1F1 0.9019
72 DXP 0.9018
73 MSL 0.9017
74 HMS 0.9012
75 KYN 0.9012
76 XCG 0.9010
77 0QW 0.9005
78 BRH 0.9005
79 9BF 0.9004
80 SYE 0.9002
81 O45 0.8999
82 363 0.8999
83 3PG 0.8998
84 SG2 0.8997
85 KTW 0.8995
86 M1Z 0.8989
87 5WN 0.8987
88 PHE 0.8987
89 GWM 0.8987
90 F98 0.8986
91 TZP 0.8983
92 EXD 0.8981
93 IAC 0.8978
94 AAN 0.8973
95 MAJ 0.8972
96 2O6 0.8971
97 F1P 0.8970
98 PC 0.8969
99 ESI 0.8968
100 XQI 0.8967
101 1PS 0.8966
102 MMS 0.8965
103 UN1 0.8963
104 ESP 0.8961
105 HCI 0.8956
106 M1P 0.8955
107 BZE 0.8955
108 4NP 0.8954
109 SSC 0.8952
110 SR1 0.8952
111 RES 0.8950
112 Q04 0.8949
113 MF3 0.8948
114 IOP 0.8946
115 5GT 0.8946
116 TMG 0.8946
117 CXP 0.8945
118 PBA 0.8945
119 DDU 0.8944
120 N2M 0.8944
121 XDK 0.8943
122 GO2 0.8941
123 APS 0.8939
124 R2P 0.8937
125 GL1 0.8937
126 B85 0.8936
127 TPO 0.8934
128 505 0.8932
129 4LW 0.8932
130 GO8 0.8930
131 QH3 0.8930
132 CFA 0.8929
133 9YT 0.8928
134 4XF 0.8928
135 L5V 0.8926
136 PXP 0.8926
137 3IL 0.8926
138 14W 0.8926
139 6J5 0.8924
140 TLM 0.8924
141 6FZ 0.8923
142 1A7 0.8922
143 6HO 0.8921
144 4NS 0.8918
145 FWD 0.8917
146 BZ2 0.8916
147 N9J 0.8915
148 XRS 0.8914
149 1L5 0.8913
150 GNW 0.8912
151 JFM 0.8911
152 3ZB 0.8910
153 S0E 0.8908
154 2FX 0.8908
155 ALE 0.8907
156 TRP 0.8903
157 26E 0.8902
158 M3Q 0.8902
159 33S 0.8901
160 HPS 0.8901
161 PPY 0.8899
162 3VX 0.8899
163 HPP 0.8898
164 Q9Z 0.8896
165 FER 0.8896
166 ARP 0.8895
167 NFA 0.8894
168 HA5 0.8894
169 DX5 0.8893
170 TSR 0.8893
171 3C4 0.8893
172 EN1 0.8891
173 MXD 0.8890
174 P9E 0.8890
175 S7A 0.8888
176 HL4 0.8888
177 ATX 0.8888
178 HFA 0.8885
179 S2P 0.8884
180 MD6 0.8884
181 YOF 0.8883
182 G1P 0.8882
183 0HN 0.8882
184 LTN 0.8880
185 YZM 0.8878
186 EUE 0.8877
187 SHI 0.8876
188 GPM 0.8873
189 A5E 0.8872
190 4LV 0.8871
191 A29 0.8870
192 SKF 0.8869
193 15N 0.8869
194 PMV 0.8868
195 HPV 0.8862
196 HF2 0.8862
197 M5H 0.8861
198 HQJ 0.8859
199 M3E 0.8857
200 S8V 0.8855
201 11C 0.8853
202 CLU 0.8852
203 9B3 0.8851
204 SYC 0.8851
205 4HP 0.8850
206 3HP 0.8850
207 ENO 0.8850
208 EXR 0.8850
209 R10 0.8850
210 PLP PMP 0.8849
211 PZP 0.8849
212 9F8 0.8849
213 GJK 0.8849
214 5WZ 0.8847
215 X04 0.8847
216 YTX 0.8847
217 AKG 0.8846
218 CWD 0.8843
219 428 0.8843
220 36E 0.8842
221 X48 0.8842
222 OSE 0.8841
223 XXG 0.8840
224 4MB 0.8840
225 OOG 0.8839
226 AMQ 0.8838
227 2LT 0.8837
228 ICB 0.8836
229 C82 0.8831
230 JDN 0.8828
231 FF2 0.8828
232 PMF 0.8828
233 LDP 0.8827
234 AOT 0.8826
235 TOH 0.8825
236 NFM 0.8825
237 BL0 0.8824
238 BPY 0.8824
239 6NT 0.8823
240 QMP 0.8823
241 7ZL 0.8823
242 QMS 0.8823
243 AMR 0.8822
244 DLT 0.8821
245 5SP 0.8820
246 KTA 0.8820
247 ASC 0.8820
248 TYR 0.8819
249 6HP 0.8819
250 GCO 0.8818
251 LAO 0.8817
252 2ZM 0.8817
253 Y3L 0.8817
254 9GB 0.8816
255 263 0.8813
256 HWD 0.8813
257 N7I 0.8813
258 6C5 0.8812
259 L21 0.8811
260 CXH 0.8810
261 BNF 0.8808
262 IPD 0.8808
263 PBN 0.8807
264 LIP 0.8807
265 DPN 0.8807
266 NAG 0.8804
267 N91 0.8803
268 JAW 0.8801
269 OGA 0.8797
270 JF1 0.8796
271 UNJ 0.8796
272 ARG 0.8795
273 HXY 0.8795
274 JVA 0.8795
275 57O 0.8795
276 B40 0.8794
277 9W5 0.8793
278 BWD 0.8792
279 1FD 0.8792
280 HHH 0.8791
281 6TZ 0.8789
282 FOM 0.8785
283 Z70 0.8784
284 JV4 0.8784
285 8NX 0.8783
286 8NB 0.8782
287 5OY 0.8781
288 535 0.8781
289 54F 0.8780
290 AEG 0.8780
291 CIY 0.8779
292 URO 0.8779
293 TYE 0.8778
294 0JD 0.8777
295 TYL 0.8777
296 2VQ 0.8777
297 IVL 0.8777
298 KG1 0.8776
299 TL6 0.8775
300 Q03 0.8774
301 HPT 0.8773
302 CTE 0.8772
303 HG3 0.8772
304 ZIQ 0.8771
305 RCV 0.8769
306 TOM 0.8768
307 MSR 0.8768
308 BP7 0.8767
309 S0W 0.8766
310 7Q1 0.8766
311 C0H 0.8764
312 R1P 0.8763
313 657 0.8763
314 6L6 0.8762
315 3NY 0.8760
316 SLY 0.8760
317 CS2 0.8760
318 3A9 0.8759
319 JRB 0.8757
320 K7M 0.8756
321 XRX 0.8755
322 88L 0.8755
323 6NI 0.8753
324 C53 0.8752
325 IL5 0.8752
326 EQA 0.8751
327 9ZE 0.8751
328 2K8 0.8751
329 1XA 0.8750
330 HX4 0.8750
331 ZZU 0.8749
332 DZA 0.8748
333 IYR 0.8747
334 JZA 0.8747
335 EYJ 0.8746
336 DTR 0.8745
337 92P 0.8743
338 MPV 0.8743
339 NPA 0.8743
340 4BL 0.8742
341 DTY 0.8741
342 6J9 0.8740
343 ABI 0.8740
344 4XV 0.8740
345 H4E 0.8739
346 BNL 0.8738
347 EGR 0.8737
348 NVU 0.8737
349 IFG 0.8735
350 O2Y 0.8734
351 56D 0.8734
352 2BX 0.8733
353 DHM 0.8732
354 268 0.8732
355 LJ3 0.8731
356 H35 0.8730
357 LNR 0.8729
358 CCV 0.8728
359 PFF 0.8728
360 0HO 0.8728
361 HIC 0.8727
362 API 0.8727
363 FPL 0.8727
364 N1E 0.8725
365 RKV 0.8725
366 NYL 0.8725
367 M3P 0.8724
368 PRA 0.8723
369 NBG 0.8723
370 EV0 0.8722
371 I4D 0.8722
372 CK2 0.8720
373 GFP 0.8719
374 9PL 0.8715
375 CH8 0.8715
376 NLQ 0.8715
377 1SV 0.8714
378 B4O 0.8712
379 68A 0.8711
380 8WT 0.8710
381 GVG 0.8710
382 AHC 0.8709
383 GLR 0.8708
384 YPN 0.8707
385 AHN 0.8705
386 2KU 0.8705
387 NPL 0.8703
388 MUK 0.8702
389 0FR 0.8701
390 4Z9 0.8701
391 152 0.8700
392 HJ8 0.8699
393 ZEA 0.8699
394 XFE 0.8699
395 YIE 0.8698
396 MJ5 0.8698
397 78U 0.8698
398 UA5 0.8697
399 3YP 0.8696
400 LGT 0.8696
401 AEH 0.8696
402 S3C 0.8695
403 S2G 0.8695
404 4SX 0.8694
405 NNH 0.8693
406 P58 0.8693
407 78Y 0.8691
408 6ZX 0.8691
409 TT4 0.8691
410 PPT 0.8690
411 GLU 0.8689
412 JB8 0.8687
413 GGB 0.8686
414 ONR 0.8685
415 CH9 0.8685
416 IWD 0.8683
417 BY5 0.8683
418 2IT 0.8681
419 4V2 0.8680
420 SB7 0.8678
421 DJN 0.8677
422 H7Y 0.8676
423 8XL 0.8675
424 LT1 0.8675
425 SLS 0.8674
426 DXG 0.8672
427 M45 0.8672
428 PRO GLY 0.8671
429 DIR 0.8669
430 SQV 0.8668
431 FZM 0.8666
432 JND 0.8666
433 E1T 0.8665
434 E35 0.8664
435 BQ2 0.8662
436 F4E 0.8662
437 PW1 0.8660
438 PJW 0.8660
439 GLN 0.8659
440 3QO 0.8659
441 R9G 0.8658
442 DUR 0.8658
443 3AL 0.8658
444 ST3 0.8656
445 0FK 0.8656
446 1VK 0.8654
447 PH3 0.8653
448 SQ4 0.8653
449 PRZ 0.8653
450 PNP 0.8653
451 4OG 0.8652
452 RLG 0.8651
453 4BF 0.8651
454 S24 0.8650
455 6C9 0.8647
456 F90 0.8646
457 Q06 0.8645
458 258 0.8643
459 HHI 0.8643
460 GZL 0.8643
461 HNL 0.8640
462 TSS 0.8639
463 JF2 0.8638
464 OMD 0.8638
465 KYA 0.8638
466 XYH 0.8638
467 HNK 0.8637
468 P0P 0.8637
469 4Z1 0.8635
470 R9J 0.8634
471 ZME 0.8634
472 DEW 0.8633
473 CK1 0.8632
474 CIR 0.8630
475 RUJ 0.8630
476 PTS 0.8630
477 MQB 0.8630
478 2O8 0.8630
479 HIS 0.8629
480 K80 0.8627
481 DHI 0.8624
482 97T 0.8624
483 TIH 0.8624
484 RAT 0.8622
485 1QV 0.8622
486 7MX 0.8621
487 KF5 0.8620
488 2CZ 0.8620
489 SAF 0.8619
490 VXX 0.8619
491 YO5 0.8619
492 67Y 0.8618
493 7R4 0.8617
494 NCT 0.8616
495 NLA 0.8612
496 42J 0.8611
497 25Y 0.8608
498 SV4 0.8606
499 SSM 0.8606
500 GB4 0.8605
501 92G 0.8605
502 DGL 0.8604
503 PHI 0.8603
504 SNU 0.8603
505 Q2Z 0.8602
506 SOJ 0.8601
507 ZYQ 0.8600
508 CHH 0.8599
509 DEE 0.8598
510 9UL 0.8597
511 EMZ 0.8594
512 ZYV 0.8593
513 EQW 0.8592
514 LL1 0.8588
515 I59 0.8588
516 BIO 0.8587
517 GB5 0.8587
518 3D8 0.8585
519 8GL 0.8583
520 NOK 0.8580
521 25X 0.8578
522 M4T 0.8576
523 GTK 0.8576
524 3Y7 0.8574
525 4NZ 0.8574
526 OSB 0.8573
527 F6R 0.8573
528 AY4 0.8572
529 LUQ 0.8570
530 LYS 0.8568
531 B2J 0.8564
532 2F6 0.8563
533 12T 0.8563
534 C4E 0.8562
535 4TB 0.8561
536 C0W 0.8556
537 EUH 0.8555
538 3B4 0.8555
539 F5C 0.8552
540 PIM 0.8548
541 MZT 0.8548
542 A9P 0.8547
543 AS3 0.8546
544 ZRK 0.8545
545 SQ7 0.8528
546 SDF 0.8525
547 TNX 0.8523
548 RUY 0.8519
549 7MU 0.8516
550 EYY 0.8505
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3MBI; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3mbi.bio2) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3MBI; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3mbi.bio2) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3MBI; Ligand: HSX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3mbi.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3MBI; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3mbi.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3MBI; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3mbi.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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