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Receptor
PDB id Resolution Class Description Source Keywords
3MF2 2.15 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF CLASS II AARS HOMOLOGUE (BLL0957) COMPL AMP BRADYRHIZOBIUM JAPONICUM AMINOACYL-TRNA SYNTHETASE SERYL-TRNA SYNTHETASE ZINC ION AMINO ACID:[CARRIER PROTEIN] LIGASE BLL0957
Ref.: HOMOLOGS OF AMINOACYL-TRNA SYNTHETASES ACYLATE CARR PROTEINS AND PROVIDE A LINK BETWEEN RIBOSOMAL AND NONRIBOSOMAL PEPTIDE SYNTHESIS PROC.NATL.ACAD.SCI.USA V. 107 14585 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AMP A:1010;
B:1010;
Valid;
Valid;
none;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
GOL A:1011;
A:327;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
ZN A:1000;
B:1000;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3MF2 2.15 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF CLASS II AARS HOMOLOGUE (BLL0957) COMPL AMP BRADYRHIZOBIUM JAPONICUM AMINOACYL-TRNA SYNTHETASE SERYL-TRNA SYNTHETASE ZINC ION AMINO ACID:[CARRIER PROTEIN] LIGASE BLL0957
Ref.: HOMOLOGS OF AMINOACYL-TRNA SYNTHETASES ACYLATE CARR PROTEINS AND PROVIDE A LINK BETWEEN RIBOSOMAL AND NONRIBOSOMAL PEPTIDE SYNTHESIS PROC.NATL.ACAD.SCI.USA V. 107 14585 2010
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3MF2 - AMP C10 H14 N5 O7 P c1nc(c2c(n....
2 3MEY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3MF1 - G5A C12 H17 N7 O7 S c1nc(c2c(n....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3MF2 - AMP C10 H14 N5 O7 P c1nc(c2c(n....
2 3MEY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3MF1 - G5A C12 H17 N7 O7 S c1nc(c2c(n....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3MF2 - AMP C10 H14 N5 O7 P c1nc(c2c(n....
2 3MEY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3MF1 - G5A C12 H17 N7 O7 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AMP; Similar ligands found: 395
No: Ligand ECFP6 Tc MDL keys Tc
1 A 1 1
2 AMP 1 1
3 A2D 0.833333 0.943662
4 ABM 0.833333 0.943662
5 ADP 0.823529 0.971429
6 A12 0.808824 0.931507
7 AP2 0.808824 0.931507
8 BA3 0.808824 0.943662
9 SRA 0.80303 0.944444
10 AP5 0.797101 0.943662
11 B4P 0.797101 0.943662
12 HEJ 0.788732 0.971429
13 ATP 0.788732 0.971429
14 AT4 0.785714 0.931507
15 AN2 0.785714 0.957747
16 5FA 0.777778 0.971429
17 AQP 0.777778 0.971429
18 APC 0.777778 0.931507
19 CA0 0.774648 0.917808
20 M33 0.774648 0.930556
21 AU1 0.774648 0.944444
22 ADX 0.774648 0.848101
23 ACP 0.763889 0.944444
24 50T 0.763889 0.957747
25 25A 0.75641 0.971429
26 AR6 0.753425 0.943662
27 PRX 0.753425 0.917808
28 APR 0.753425 0.943662
29 ACQ 0.746667 0.944444
30 T99 0.746667 0.931507
31 TAT 0.746667 0.931507
32 SAP 0.743243 0.918919
33 AD9 0.743243 0.944444
34 AGS 0.743243 0.918919
35 RBY 0.743243 0.905405
36 ADV 0.743243 0.905405
37 ANP 0.723684 0.944444
38 ADP PO3 0.72 0.942857
39 6YZ 0.717949 0.944444
40 5AL 0.714286 0.930556
41 SON 0.712329 0.931507
42 LMS 0.710145 0.825
43 RAB 0.709677 0.842857
44 XYA 0.709677 0.842857
45 ADN 0.709677 0.842857
46 ATF 0.705128 0.931507
47 GAP 0.701299 0.891892
48 A22 0.7 0.957747
49 SRP 0.696203 0.905405
50 7D5 0.691176 0.902778
51 A3P 0.684932 0.971014
52 A2P 0.684932 0.956522
53 ADP ALF 0.683544 0.868421
54 ALF ADP 0.683544 0.868421
55 ADQ 0.682927 0.917808
56 MAP 0.679012 0.918919
57 ADP VO4 0.675 0.930556
58 VO4 ADP 0.675 0.930556
59 OOB 0.670732 0.930556
60 9ZA 0.670732 0.906667
61 8QN 0.670732 0.930556
62 5SV 0.670732 0.87013
63 9ZD 0.670732 0.906667
64 PTJ 0.670588 0.894737
65 AOC 0.666667 0.84507
66 PAJ 0.662651 0.858974
67 4AD 0.662651 0.893333
68 A3R 0.662651 0.881579
69 A1R 0.662651 0.881579
70 AMO 0.662651 0.905405
71 5N5 0.661538 0.816901
72 DAL AMP 0.658537 0.90411
73 IMO 0.657534 0.928571
74 AHX 0.654762 0.87013
75 00A 0.654762 0.881579
76 DLL 0.654762 0.930556
77 5AS 0.653333 0.776471
78 A4D 0.651515 0.816901
79 5CD 0.651515 0.828571
80 9X8 0.647059 0.893333
81 OAD 0.647059 0.917808
82 3UK 0.647059 0.917808
83 ADP BMA 0.647059 0.891892
84 25L 0.643678 0.957747
85 PR8 0.639535 0.848101
86 WAQ 0.639535 0.881579
87 LAD 0.639535 0.858974
88 B5V 0.639535 0.905405
89 DTA 0.637681 0.808219
90 V3L 0.6375 0.971429
91 3DH 0.633803 0.794521
92 BIS 0.632184 0.906667
93 ME8 0.632184 0.8375
94 3OD 0.632184 0.917808
95 FYA 0.632184 0.930556
96 NB8 0.632184 0.87013
97 1ZZ 0.632184 0.8375
98 TXA 0.632184 0.905405
99 MTA 0.628571 0.794521
100 3AM 0.625 0.956522
101 EP4 0.623188 0.773333
102 A A 0.62069 0.971429
103 9SN 0.617977 0.87013
104 M2T 0.614286 0.753247
105 JB6 0.613636 0.881579
106 YAP 0.611111 0.893333
107 B5Y 0.611111 0.893333
108 FA5 0.611111 0.905405
109 B5M 0.611111 0.893333
110 MYR AMP 0.606742 0.814815
111 G5A 0.604938 0.776471
112 XAH 0.604396 0.8375
113 4UV 0.597826 0.893333
114 71V 0.597403 0.906667
115 ATP A A A 0.593407 0.929577
116 PAP 0.592593 0.957143
117 G3A 0.591398 0.894737
118 2AM 0.589041 0.942857
119 5X8 0.5875 0.783784
120 6RE 0.586667 0.779221
121 6C6 0.585366 0.905405
122 AFH 0.585106 0.858974
123 4UU 0.585106 0.893333
124 G5P 0.585106 0.894737
125 GA7 0.585106 0.905405
126 7D3 0.584416 0.878378
127 A5A 0.583333 0.804878
128 TSB 0.581395 0.795181
129 AMP DBH 0.580645 0.891892
130 TYR AMP 0.580645 0.868421
131 2A5 0.580247 0.891892
132 DQV 0.578947 0.930556
133 DSH 0.578947 0.74359
134 GTA 0.578947 0.860759
135 TAD 0.578947 0.858974
136 6IA 0.578313 0.858974
137 SSA 0.576471 0.776471
138 AMZ 0.575342 0.888889
139 C2R 0.575342 0.876712
140 PGS 0.575 0.857143
141 7D4 0.575 0.878378
142 ZAS 0.573333 0.786667
143 ATR 0.573171 0.942857
144 LAQ 0.572917 0.8375
145 AAM 0.571429 1
146 J7C 0.571429 0.789474
147 A3N 0.571429 0.783784
148 PPS 0.571429 0.848101
149 AIR 0.571429 0.927536
150 52H 0.569767 0.776471
151 54H 0.569767 0.785714
152 VMS 0.569767 0.785714
153 AR6 AR6 0.568421 0.916667
154 ARG AMP 0.568421 0.82716
155 7MD 0.568421 0.8375
156 YLP 0.56701 0.817073
157 48N 0.56701 0.87013
158 OVE 0.565789 0.90411
159 UPA 0.565657 0.881579
160 2SA 0.564706 0.905405
161 S4M 0.564103 0.682353
162 5CA 0.563218 0.776471
163 53H 0.563218 0.776471
164 8X1 0.563218 0.75
165 UP5 0.561224 0.893333
166 NAI 0.561224 0.881579
167 6V0 0.561224 0.87013
168 NAX 0.561224 0.848101
169 4UW 0.561224 0.858974
170 DND 0.561224 0.905405
171 TXD 0.561224 0.881579
172 NXX 0.561224 0.905405
173 NIA 0.56 0.820513
174 D5M 0.558442 0.902778
175 DA 0.558442 0.902778
176 MAO 0.556962 0.777778
177 AHZ 0.556701 0.814815
178 OMR 0.555556 0.82716
179 ITT 0.555556 0.915493
180 TYM 0.555556 0.905405
181 TXE 0.555556 0.881579
182 5AD 0.552239 0.768116
183 A2R 0.551724 0.957747
184 LPA AMP 0.55102 0.814815
185 DSZ 0.550562 0.776471
186 NSS 0.550562 0.776471
187 LSS 0.550562 0.758621
188 AP0 0.55 0.87013
189 YLC 0.55 0.8375
190 4TC 0.55 0.87013
191 YLB 0.55 0.817073
192 P5A 0.549451 0.741573
193 139 0.54902 0.848101
194 A4P 0.544554 0.819277
195 NVA LMS 0.544444 0.75
196 GJV 0.544304 0.769231
197 7D7 0.544118 0.763889
198 9K8 0.543478 0.711111
199 A7D 0.54321 0.797297
200 AF3 ADP 3PG 0.54 0.835443
201 6K6 0.539326 0.957143
202 IOT 0.539216 0.829268
203 A3G 0.538462 0.797297
204 LEU LMS 0.538462 0.75
205 A5D 0.535714 0.808219
206 7MC 0.534653 0.817073
207 T5A 0.533981 0.817073
208 ADJ 0.533981 0.82716
209 YLA 0.533981 0.817073
210 GSU 0.532609 0.776471
211 KAA 0.532609 0.75
212 7RA 0.531646 0.985507
213 SFG 0.53012 0.77027
214 SAH 0.529412 0.763158
215 HFD 0.529412 0.918919
216 AYB 0.528846 0.807229
217 CNA 0.528846 0.905405
218 N6P 0.527473 0.942029
219 8BR 0.525 0.931507
220 F2R 0.52381 0.839506
221 80F 0.523364 0.817073
222 Y3J 0.521127 0.746479
223 YSA 0.520833 0.776471
224 7RP 0.518987 0.955882
225 BTX 0.518868 0.839506
226 NAD 0.518868 0.930556
227 COD 0.518868 0.788235
228 G A A A 0.518868 0.87013
229 MHZ 0.518072 0.714286
230 SA8 0.517647 0.725
231 6AD 0.517241 0.883117
232 DZD 0.514019 0.858974
233 BT5 0.514019 0.829268
234 RMB 0.5125 0.898551
235 SAI 0.511628 0.753247
236 AV2 0.511364 0.890411
237 8PZ 0.510417 0.776471
238 A3D 0.509259 0.917808
239 A3S 0.506024 0.808219
240 3AT 0.505747 0.943662
241 SAM 0.505747 0.707317
242 SMM 0.505618 0.702381
243 NA7 0.505376 0.931507
244 4TA 0.504673 0.804878
245 AMP NAD 0.504673 0.90411
246 EEM 0.5 0.707317
247 G 0.5 0.905405
248 NEC 0.5 0.743243
249 5GP 0.5 0.905405
250 AAT 0.5 0.725
251 YLY 0.495495 0.807229
252 M24 0.495495 0.848101
253 7C5 0.494949 0.815789
254 DAT 0.494118 0.878378
255 A3T 0.494118 0.819444
256 P2P 0.493827 0.928571
257 FAI 0.493827 0.888889
258 1RB 0.493671 0.911765
259 NAE 0.491071 0.893333
260 U A 0.490909 0.906667
261 NAJ PZO 0.490909 0.846154
262 A G 0.490741 0.881579
263 TM1 0.489583 0.771084
264 A A A 0.489362 0.90411
265 A6D 0.489362 0.740741
266 PO4 PO4 A A A A PO4 0.489362 0.901408
267 S7M 0.488889 0.707317
268 DTP 0.488636 0.878378
269 RBZ 0.4875 0.873239
270 101 0.4875 0.902778
271 EAD 0.486957 0.848101
272 NAQ 0.486726 0.87013
273 U A G G 0.486239 0.881579
274 4YB 0.485149 0.758621
275 NDE 0.483051 0.931507
276 ZID 0.482456 0.917808
277 N0B 0.482456 0.817073
278 WSA 0.480769 0.785714
279 RGT 0.479592 0.931507
280 ARU 0.478723 0.835443
281 GGZ 0.478261 0.8
282 JLN 0.47561 0.863014
283 ANZ 0.475248 0.820513
284 QQY 0.475 0.837838
285 ACK 0.475 0.885714
286 NAJ PYZ 0.473684 0.804878
287 S8M 0.473118 0.779221
288 GEK 0.473118 0.734177
289 AVV 0.473118 0.87013
290 3AD 0.472973 0.828571
291 A U 0.471698 0.868421
292 P1H 0.470588 0.82716
293 0UM 0.468085 0.716049
294 RVP 0.467532 0.847222
295 649 0.466667 0.741573
296 Z5A 0.465517 0.776471
297 PMO 0.464286 0.873239
298 SXZ 0.463918 0.707317
299 62X 0.463158 0.682353
300 QQX 0.4625 0.826667
301 8Q2 0.462264 0.75
302 2VA 0.45977 0.797297
303 IMP 0.458824 0.90411
304 K15 0.458333 0.698795
305 CC5 0.458333 0.84058
306 AS 0.457831 0.855263
307 DDS 0.455556 0.851351
308 V1N 0.455446 0.943662
309 NJP 0.454545 0.918919
310 7DD 0.453488 0.957143
311 93A 0.453488 0.804878
312 G7M 0.453488 0.87013
313 3L1 0.453333 0.77027
314 3D1 0.453333 0.77027
315 EO7 0.452381 0.785714
316 NDC 0.45082 0.87013
317 FB0 0.45082 0.781609
318 0WD 0.45045 0.894737
319 NVA 2AD 0.449438 0.75641
320 26A 0.447368 0.76
321 2FA 0.447368 0.810811
322 2BA 0.447059 0.914286
323 CMP 0.447059 0.927536
324 D3Y 0.446809 0.786667
325 KB1 0.444444 0.716049
326 APU 0.444444 0.893333
327 VRT 0.444444 0.766234
328 SO8 0.444444 0.786667
329 FDA 0.443548 0.809524
330 PUA 0.443478 0.858974
331 ODP 0.441441 0.883117
332 6FA 0.44 0.817073
333 103 0.439024 0.861111
334 RP1 0.439024 0.864865
335 SP1 0.439024 0.864865
336 3NZ 0.438776 0.779221
337 A C A C 0.438596 0.846154
338 7DT 0.438202 0.957143
339 NDP 0.436364 0.894737
340 NPW 0.436364 0.860759
341 MTP 0.434211 0.727273
342 FAS 0.433071 0.82716
343 SFD 0.433071 0.712766
344 FAD 0.433071 0.82716
345 IRN 0.432432 0.867647
346 ZZB 0.432432 0.792683
347 TXP 0.432432 0.894737
348 NZQ 0.432432 0.883117
349 62F 0.430769 0.8375
350 FNK 0.430769 0.781609
351 128 0.429907 0.752941
352 1DA 0.428571 0.842857
353 6MD 0.428571 0.805556
354 PAX 0.428571 0.82716
355 SLU 0.426087 0.767442
356 XNP 0.424779 0.848101
357 12D 0.424528 0.761905
358 5F1 0.423077 0.72973
359 ETB 0.422414 0.809524
360 DCA 0.422414 0.8
361 F0P 0.422018 0.725
362 WMP 0.421053 0.864865
363 GUO 0.421053 0.864865
364 FAY 0.416667 0.8375
365 38Y 0.415929 0.804878
366 5J9 0.415842 0.728395
367 COA 0.415254 0.8
368 0T1 0.415254 0.8
369 KH3 0.415094 0.690476
370 U A C C 0.413793 0.857143
371 N01 0.413793 0.90411
372 FMP 0.413793 0.871429
373 RFL 0.413534 0.797619
374 NMN AMP PO4 0.412281 0.868421
375 GP2 0.408602 0.858974
376 GDP 0.408602 0.893333
377 NAP 0.408333 0.944444
378 NOC 0.407895 0.760563
379 2ER 0.405941 0.831169
380 1PR 0.405941 0.820513
381 P5F 0.405797 0.8
382 CAO 0.404959 0.772727
383 TAP 0.404959 0.906667
384 30N 0.404959 0.731183
385 COS 0.404959 0.781609
386 AMX 0.404959 0.809524
387 XMP 0.402299 0.891892
388 G2P 0.402062 0.858974
389 APC G U 0.401709 0.833333
390 U A A U 0.401639 0.906667
391 CMX 0.401639 0.8
392 NA0 0.401639 0.931507
393 SCO 0.401639 0.8
394 9JJ 0.40146 0.8375
395 F2N 0.4 0.790698
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3MF2; Ligand: AMP; Similar sites found with APoc: 186
This union binding pocket(no: 1) in the query (biounit: 3mf2.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 5UC4 83S 1.36364
2 5GLT BGC GAL NAG GAL 1.40845
3 2QPU QPU 1.44509
4 2QPU QPS 1.44509
5 1UNB PN1 1.60772
6 1UNB AKG 1.60772
7 1CHM CMS 1.7341
8 5NFB 8VT 1.7341
9 2G50 PYR 1.7341
10 2VFT SOR 1.7341
11 3HXU A5A 2.02312
12 5G48 1FL 2.02312
13 4RD0 GDP 2.02312
14 1GP6 QUE 2.02312
15 1GP6 SIN 2.02312
16 1GP6 DH2 2.02312
17 2Z3U CRR 2.02312
18 3LVW GSH 2.02312
19 3WWC BUA 2.02312
20 4MOB ADP 2.10843
21 5ODY 9SK 2.17391
22 3WUC GLC GAL 2.18978
23 2OVW CBI 2.31214
24 5WS9 OXL 2.31214
25 3G1Z AMP 2.45399
26 1SDW IYT 2.54777
27 1DZK PRZ 2.54777
28 5T7I LAT NAG GAL 2.58065
29 3T4L ZEA 2.59259
30 3IAL PR8 2.60116
31 1YFS ALA 2.60116
32 3TEG DAH 2.60116
33 3JQ3 ADP 2.60116
34 3VSV XYP 2.60116
35 4KTP BGC 2.60116
36 6B9T 2HE 2.60116
37 3OJI PYV 2.6455
38 4WVW SLT 2.77778
39 4R38 RBF 2.85714
40 5JBE MAL 2.89017
41 1NKI PPF 2.96296
42 3AVR OGA 3.01318
43 3WV6 GAL BGC 3.04054
44 3WV6 GAL GLC 3.04054
45 2D6M LBT 3.14465
46 1OJJ GLC GAL 3.17919
47 1OJK GLC BGC 3.17919
48 4D1J DGJ 3.17919
49 2VO4 4NM 3.19635
50 4NPL AKG 3.2
51 5TPV TYD 3.26797
52 1NXJ TLA 3.27869
53 12AS AMP 3.33333
54 2BS5 BGC GAL FUC 3.33333
55 4YDQ HFG 3.46821
56 4YDQ ANP 3.46821
57 5HV7 RBL 3.46821
58 5MZI FAD 3.46821
59 5MZI FYK 3.46821
60 3HQP OXL 3.46821
61 4OCT AKG 3.6036
62 4L4J NAG NAG BMA MAN NAG 3.61991
63 2XGT NSS 3.67816
64 5ABX MGP 3.68421
65 5HV0 AKG 3.68664
66 3REU ATP 3.7415
67 1SES AHX 3.75723
68 1SES AMP 3.75723
69 5XIJ ANP 3.75723
70 5XIJ 873 3.75723
71 1MDC PLM 3.78788
72 2PEL LBT 3.81356
73 5HWV MBN 3.84615
74 5UR6 8KM 3.8674
75 4YLZ LAT NAG GAL 3.92157
76 2XMY CDK 4.02685
77 1X54 4AD 4.04624
78 3ZJX BOG 4.04624
79 6FA4 D1W 4.04624
80 2ZHL NAG GAL GAL NAG 4.05405
81 4EUO ABU 4.0625
82 3L5R 47X 4.09836
83 2Z77 HE7 4.31655
84 3NEM AMO 4.33526
85 3NEM ATP 4.33526
86 4ZTD ALA GLY ALA GLY ALA 4.34783
87 3M3E GAL A2G NPO 4.34783
88 3OYW TDG 4.47761
89 3WG3 A2G GAL NAG FUC 4.49438
90 6FOF LAT 4.59184
91 2YMZ LAT 4.61538
92 1E1O LYS 4.62428
93 6CLV 6MB 4.811
94 1JQY A32 4.85437
95 4HWT 1B2 4.91329
96 3QSB 743 4.91329
97 4YRI 4JH 4.91329
98 1WW5 SGA BGC 5
99 5DG2 GAL GLC 5.18518
100 1G51 AMO 5.20231
101 1W0O SIA 5.20231
102 4W6Z ETF 5.20231
103 5X1M THG 5.20231
104 5X1M DHB 5.20231
105 3A5Z KAA 5.2356
106 1HXD BTN 5.29595
107 4CS4 AXZ 5.47445
108 4CS4 ANP 5.47445
109 5XIO ANP 5.49133
110 6E08 NAP 5.49133
111 2ART LPA AMP 5.72519
112 3E9I XAH 5.78035
113 4RF7 ARG 5.78035
114 4JH6 FCN 5.7971
115 6A63 LAT 5.7971
116 1M6P M6P 5.92105
117 1A78 TDG 5.97015
118 3ZXE PGZ 6.01504
119 4J36 1HR 6.06936
120 2AG4 OLA 6.09756
121 2AG4 LP3 6.09756
122 1QY1 PRZ 6.32184
123 5V59 8X1 6.35838
124 5VAD 91Y 6.35838
125 5AIG VPR 6.4
126 4NAO AKG 6.44172
127 3NV3 GAL NAG MAN 6.52174
128 1C1L GAL BGC 6.56934
129 1DCP HBI 6.73077
130 2DXU BT5 6.80851
131 1B7Y FYA 6.93642
132 3H22 B53 7.07071
133 1N5S ADL 7.14286
134 4TSZ ACE GLN ALC ASP LEU ZCL 7.6087
135 3B00 16A 7.72059
136 2ZTG A5A 7.80347
137 1A5Z FBP 7.80347
138 4IMO PWZ 7.95455
139 6GR0 F8W 8.04598
140 6GNO XDI 8.14815
141 1WLE SRP 8.3815
142 3BJU ATP 8.3815
143 3I8T LBT 8.53659
144 5NLD LBT 8.63309
145 1Y2F WAI 8.63309
146 1YUM NCN 8.67769
147 1ZM1 BGC BGC BGC 8.71369
148 4ZU4 4TG 8.78378
149 1GT4 UNA 8.80503
150 1IS3 LAT 8.88889
151 3RWP ABQ 9.00322
152 3G08 FEE 9.09091
153 4XCB AKG 9.1954
154 3A7R LAQ 9.19881
155 2IUW AKG 9.2437
156 3QO8 SSA 9.24856
157 1ELI PYC 9.24856
158 2GJ5 VD3 9.25926
159 2J3M PRI 9.53757
160 2J3M ATP 9.53757
161 3A5Y KAA 9.56522
162 3HCH RSM 9.58904
163 4WOE ADP 10.1156
164 2BOS GLA GAL GLC 10.2941
165 4QXB OGA 10.2941
166 1SLT NDG GAL 10.4478
167 1ULE GLA GAL NAG 10.6667
168 1HBK MYR 11.236
169 2QX0 PH2 11.3208
170 5K21 6QF 12.766
171 2FVK DUC 13.2948
172 5H9Q TD2 13.5484
173 4Y24 TD2 13.6364
174 4HWS 1B3 13.8728
175 3UH0 TSB 13.8728
176 2R0H CTO 14.0244
177 3SAO DBH 15
178 3SAO NKN 15
179 5H9P TD2 15.1899
180 6CAY ERG 15.9763
181 2QL9 CIT 16.185
182 1I82 BGC BGC 16.4021
183 2I4O ATP 17.341
184 2CJA ATP 18.4971
185 2JIG PD2 21.4286
186 2CJ9 SSA 29.7688
Pocket No.: 2; Query (leader) PDB : 3MF2; Ligand: AMP; Similar sites found with APoc: 106
This union binding pocket(no: 2) in the query (biounit: 3mf2.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 3TCT 3MI None
2 3JU6 ANP 1.44509
3 4BG4 ADP 1.44509
4 2VWT PYR 1.49813
5 3PUR 2HG 1.7341
6 3IES M24 2.02312
7 1IZC PYR 2.0649
8 5BVE 4VG 2.21607
9 2YNE YNE 2.31214
10 2YNE NHW 2.31214
11 1VRP ADP 2.31214
12 6C1S EFV 2.31214
13 4WHZ 3NL 2.31214
14 6EWZ APC 2.53165
15 1RJW ETF 2.65487
16 6ACS CIT 2.71318
17 3DLG GWE 2.89017
18 5LIA 6XN 2.89017
19 4GN8 ASO 3.01003
20 4Z3E GAL NGA GLA BGC GAL 3.0303
21 4M1U A2G MBG 3.0303
22 6D61 4AA 3.07692
23 4OPC FDA 3.17919
24 4OPC PGT 3.17919
25 1F9V ADP 3.17919
26 4JGP PYR 3.22581
27 2W5P CL8 3.3557
28 2GQS C2R 3.37553
29 4GCZ FMN 3.46821
30 2WPB ZZI 3.61842
31 3B6R ADP 3.67454
32 4IEN GDP 3.68098
33 4O9S 2RY 3.72093
34 3G3R ANP 3.72881
35 1FDJ 13P 3.75723
36 5DMZ ADP 3.75723
37 4BTV RB3 3.77907
38 5LRT ADP 4.04624
39 5VC5 96M 4.15225
40 3VKX T3 4.21456
41 2V2G BEZ 4.29185
42 3EFS BTN 4.29185
43 5TCI MLI 4.33526
44 1F5F DHT 4.39024
45 5H2U 1N1 4.49438
46 1W8S FBP 4.56274
47 5OCG 9R5 4.7619
48 5KJW 53C 4.91329
49 2PNC CLU 4.91329
50 1KDK DHT 5.08475
51 1H5R THM 5.11945
52 5NKN LOC 5.17241
53 1OUK 084 5.20231
54 5DXT 5H5 5.20231
55 3K8D CTP 5.30303
56 3H0L ADP 5.31915
57 1TT8 PHB 5.4878
58 6B3V 7DQ 5.49133
59 2E5A LAQ 5.49133
60 1KJ1 MAN 5.50459
61 5EW9 5VC 5.53506
62 3NZ1 3NY 5.74713
63 4NAE 1GP 5.77778
64 1W3T 3GR 5.78231
65 4NRT 2NG 5.89354
66 5WL1 D3D 6.06061
67 5WL1 CUY 6.06061
68 3CBC DBS 6.56566
69 3A16 PXO 6.6474
70 4XTX 590 6.66667
71 4NV7 COA 6.73077
72 2AGC DAO 6.79012
73 5N0L ILE 6.91824
74 1U29 I3P 6.97674
75 3TW1 AHN 7.173
76 1Q11 TYE 7.22543
77 5FXD H7Y 7.22543
78 1IND EOT 7.51445
79 6H8S FSZ 7.6412
80 2Y6P CTP 7.69231
81 1SWG BTN 7.8125
82 5TH5 MET 7.98479
83 2QHV OC9 8.09524
84 5A89 FMN 8.33333
85 5A89 ADP 8.33333
86 5JZJ AN2 8.41751
87 4FE2 AIR 8.62745
88 1OFL NGK GCD 8.95954
89 2QHS OCA 9.2827
90 2YKL NLD 9.43396
91 3QUZ QUV 9.54357
92 1MFI FHC 9.64912
93 3K56 IS3 10.1504
94 5YSN 5AD 10.5085
95 1SU2 ATP 11.3208
96 5ML3 DL3 11.4094
97 2VQ5 LDP 11.4428
98 3A76 SPD 12.5
99 6BU0 IHP 12.9771
100 4YBN FAD 13.3929
101 5CLO NS8 13.5593
102 1I7E IBS 13.5849
103 3WUD GLC GAL 13.9706
104 1U0A BGC BGC BGC BGC 14.486
105 5FI4 5XV 14.7399
106 1KGI T4A 23.622
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