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Receptor
PDB id Resolution Class Description Source Keywords
3N9P 2.39 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3K27ME2 PEPTIDE A CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FE2 A:1;
Part of Protein;
none;
submit data
55.845 Fe [Fe+2...
OGA A:4;
Valid;
none;
submit data
147.086 C4 H5 N O5 C(C(=...
ZN A:2;
A:3;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N9P 2.39 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3K27ME2 PEPTIDE A CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 13 families.
1 3N9P - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9N - OGA C4 H5 N O5 C(C(=O)O)N....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 11 families.
1 3N9P - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9N - OGA C4 H5 N O5 C(C(=O)O)N....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 3N9P - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9N - OGA C4 H5 N O5 C(C(=O)O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OGA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 OGA 1 1
2 AAC 0.461538 0.827586
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N9P; Ligand: OGA; Similar sites found with APoc: 217
This union binding pocket(no: 1) in the query (biounit: 3n9p.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 4FL3 ANP 1.51515
2 4B2Z P5S 1.5625
3 6EQ8 BQZ 1.70455
4 5GMH RX8 1.70455
5 1GQG DCD 1.71429
6 6FXR AKG 1.89394
7 5IQT AKG 1.90476
8 5IQT 6CU 1.90476
9 1UNB PN1 1.92926
10 1UNB AKG 1.92926
11 3PQB VGP 1.99601
12 4BG1 OGA 2.06718
13 4BG1 IVL 2.06718
14 3UXL CFI 2.08877
15 4LS7 1X9 2.11268
16 3G4G D71 2.13777
17 5O9W AKG 2.17984
18 2ZX7 ZX7 2.1978
19 2OG7 SIN 2.2409
20 2Q8E OGA 2.27273
21 1PZO CBT 2.28137
22 4XAC AKG 2.38095
23 4BJ8 BTN 2.38095
24 5AAV GW5 2.38095
25 4NPL AKG 2.4
26 4IE6 UN9 2.42424
27 5XEG AKG 2.5974
28 4WHZ 3NL 2.5974
29 4J25 OGA 2.62009
30 1OIK C26 2.65781
31 1OIJ AKG 2.65781
32 5FP4 YC8 2.69461
33 4OCT AKG 2.7027
34 5FWJ MMK 2.76008
35 4C0R GDS 2.82258
36 2FCU AKG 2.8754
37 5YU3 PRO 2.90698
38 5YU3 NAD 2.90698
39 5SVV FMN 2.91971
40 5FP3 3JI 2.94118
41 1LRH NLA 3.06748
42 5W8Q BU4 3.07692
43 4P7X YCP 3.08219
44 4P7X AKG 3.08219
45 3T50 FMN 3.125
46 3VPC ADP 3.19149
47 4PSB GA3 3.22581
48 2JAP J01 3.23887
49 5ZM4 AKG 3.26797
50 5ZM4 9FU 3.26797
51 5DMZ ADP 3.28767
52 1NX4 AKG 3.2967
53 5FBN 5WF 3.32103
54 1DRY AKG 3.39506
55 1DRY AAG 3.39506
56 2PVN P63 3.40909
57 3SRV S19 3.40909
58 5C3R AKG 3.49854
59 5C3R HMU 3.49854
60 1AUX AGS 3.53698
61 5EPA AKG 3.58423
62 3H7J PPY 3.7037
63 3H9A PPY 3.7037
64 2GC0 PAN 3.7234
65 5KR7 6X9 3.78788
66 5B09 4MX 3.84615
67 4YRD 3IT 3.89972
68 2WBP ZZU 3.91061
69 2WBP SIN 3.91061
70 4RFR RHN 3.94089
71 5OX6 A1Z 3.96825
72 3HQR OGA 4.06504
73 3GJB AKG 4.07523
74 4WUJ FMN 4.08163
75 5XVG 8FX 4.09556
76 2RDQ AKG 4.16667
77 4O8A FAD 4.16667
78 5L9B AKG 4.36508
79 3E85 BSU 4.43038
80 1VYF OLA 4.44444
81 6A9F 9BF 4.4843
82 6HDT BTN 4.51128
83 2PR5 FMN 4.54545
84 6EOZ 58K 4.54545
85 6EOZ AKG 4.54545
86 2A1X AKG 4.54545
87 1QFT HSM 4.57143
88 4XCB HY0 4.5977
89 4XCB AKG 4.5977
90 4JZR 4JR 4.62963
91 1WBI BTN 4.65116
92 3D72 FAD 4.69799
93 5M0T AKG 4.7619
94 6CDG PRO GLY LEU TRP LYS SER 4.79042
95 1TUF AZ1 4.83871
96 3QJ4 FAD 4.97076
97 4R38 RBF 5
98 4Q0P 0MK 5
99 6A63 LAT 5.07246
100 2YGN PCF 5.12821
101 5A89 ADP 5.12821
102 5A89 FMN 5.12821
103 2F7A BEZ 5.17241
104 5MEX SZZ 5.2795
105 5LUN OGA 5.39773
106 5LUN ARG 5.39773
107 4OJ8 AKG 5.46075
108 4OJ8 2TQ 5.46075
109 1N9L FMN 5.50459
110 4ZU5 THM 5.55556
111 1Y52 BTN 5.55556
112 3SAO NKN 5.625
113 6FUL E7Z 5.64972
114 3WUC GLC GAL 5.83942
115 3R96 ACO 5.85106
116 3R96 AMP 5.85106
117 1OI6 TMP 5.85366
118 6GG9 FMN 6.17284
119 6EXF LYS 6.1828
120 2JIG PD2 6.25
121 1SWG BTN 6.25
122 1ODM ASV 6.34441
123 4QM9 CYS 6.35838
124 3MPB FRU 6.50407
125 2IUW AKG 6.72269
126 2R40 EPH 6.76692
127 2Q0D ATP 6.79887
128 6GBV FMN 6.84932
129 5KWY C3S 6.88259
130 5CAD PCA 6.88775
131 5HV0 AKG 6.91244
132 5YBN AKG 7.00637
133 5YBL AKG 7.00637
134 2X2M X2M 7.00637
135 5A3T MMK 7.06861
136 2Z77 HE7 7.19424
137 3SLS ANP 7.23684
138 2A1L PCW 7.40741
139 5I0U DCY 7.5
140 6F6J CUW 7.5419
141 6F6J SIN 7.5419
142 4HIA FMN 7.95455
143 4HSJ 6PC 8.04598
144 5DJU FMN 8.19672
145 3T2W BTN 8.19672
146 2HKA C3S 8.46154
147 5ZCT ANP 8.49673
148 5IVE 6E8 8.78788
149 6CAY ERG 8.87574
150 3RUG DB6 8.9404
151 4AFH L0B 9.13043
152 3EW2 BTN 9.62963
153 3VOT ADP 9.64706
154 5TFZ 7BC 10
155 5NCJ SIN 10.0746
156 5NCJ HL5 10.0746
157 4WN5 MVC 10.4348
158 4JNJ BTN 10.4348
159 3W21 AKG 10.6227
160 2ZSC BTN 10.6383
161 4NAO AKG 11.0429
162 5FLJ QUE 11.2903
163 5FPX GLY SER SER HIS HIS HIS HIS HIS 11.5044
164 3T03 3T0 11.6197
165 3WW2 SF6 12.1094
166 3WW2 LPK 12.1094
167 4GGZ BTN 12.1739
168 4Z28 BTN 13.4328
169 4EES FMN 13.913
170 3E2M E2M 14.0541
171 3MTX PGT 14.5695
172 2Z6C FMN 14.7287
173 4UF0 MMK 14.7727
174 2ET1 GLV 15.625
175 1OLM VTQ 15.625
176 1W6S PQQ 16.2162
177 6H8P OGA 16.5354
178 5LY2 OGA 16.5354
179 5FWE OGA 16.5354
180 1MDC PLM 17.4242
181 4EKV BTN 17.6101
182 3RDO BTN 18.3007
183 5UQD AKG 18.75
184 4NMC 2OP 18.75
185 4NMC FAD 18.75
186 4IGQ OGA 18.75
187 1OS7 AKG 18.75
188 1OS7 TAU 18.75
189 4IGQ THR M3L GLN 18.75
190 4G2R H1L 18.75
191 4IAE 1DX 18.75
192 4BXF AKG 18.75
193 3ZO7 K6H 20.2128
194 5EFW FMN 21.875
195 5V1B 8UY 21.875
196 4M26 SIN 21.875
197 5DJT FMN 21.875
198 4M26 ZZU 21.875
199 4M26 AKG 21.875
200 4BX7 B4F 21.875
201 5JWP AKG 24.4318
202 2Y0I AKG 24.4318
203 4B7E OGA 24.6418
204 1H2K OGA 24.6418
205 1H2M OGA 24.6418
206 2WA4 069 24.6418
207 5C5T AKG 25
208 5L9V OGA 26.3158
209 5KF6 FAD 28.125
210 5KF6 TFB 28.125
211 5JSP DQY 29.8507
212 3P3N AKG 30
213 3PP0 03Q 37.5
214 5YW0 SIN 43.75
215 2P5B OGA 45.4545
216 3KV5 OGA 47.9508
217 3PUA OGA 47.9592
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