Receptor
PDB id Resolution Class Description Source Keywords
3N9Q 2.3 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K27M AND NOG CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FE2 A:1;
Part of Protein;
none;
submit data
55.845 Fe [Fe+2...
OGA A:4;
Valid;
none;
submit data
147.086 C4 H5 N O5 C(C(=...
ZN A:2;
A:3;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N9Q 2.3 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K27M AND NOG CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 13 families.
1 3N9Q - OGA C4 H5 N O5 C(C(=O)O)N....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 11 families.
1 3N9O - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9Q - OGA C4 H5 N O5 C(C(=O)O)N....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 3N9O - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9Q - OGA C4 H5 N O5 C(C(=O)O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OGA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 OGA 1 1
2 AAC 0.461538 0.827586
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N9Q; Ligand: OGA; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 3n9q.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 3KV5 OGA 47.9508
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