Receptor
PDB id Resolution Class Description Source Keywords
3NA1 2.25 Å EC: 1.14.15.6 CRYSTAL STRUCTURE OF HUMAN CYP11A1 IN COMPLEX WITH 20- HYDROXYCHOLESTEROL HOMO SAPIENS CYTOCHROME P450 20-HYDROXYCHOLESTEROL CHOLESTEROL SIDE CHACLEAVAGE STRUCTURAL GENOMICS STRUCTURAL GENOMICS CONSORTIOXIDOREDUCTASE ELECTRON TRANSPORT
Ref.: STRUCTURAL BASIS FOR PREGNENOLONE BIOSYNTHESIS BY T MITOCHONDRIAL MONOOXYGENASE SYSTEM. PROC.NATL.ACAD.SCI.USA V. 108 10139 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FES C:150;
D:151;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
175.82 Fe2 S2 S1[Fe...
HCD A:602;
B:602;
 Valid;
Valid;
 none;
none;
 submit data
402.653 C27 H46 O2 CC(C)...
HEM A:601;
B:601;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
616.487 C34 H32 Fe N4 O4 Cc1c2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N9Y 2.1 Å EC: 1.14.15.6 CRYSTAL STRUCTURE OF HUMAN CYP11A1 IN COMPLEX WITH CHOLESTER HOMO SAPIENS CYTOCHROME P450 CHOLESTEROL SIDE CHAIN CLEAVAGE STRUCTURALGENOMICS STRUCTURAL GENOMICS CONSORTIUM SGC OXIDOREDUCTAELECTRON TRANSPORT
Ref.: STRUCTURAL BASIS FOR PREGNENOLONE BIOSYNTHESIS BY T MITOCHONDRIAL MONOOXYGENASE SYSTEM. PROC.NATL.ACAD.SCI.USA V. 108 10139 2011
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3N9Y - CLR C27 H46 O CC(C)CCC[C....
2 3NA1 - HCD C27 H46 O2 CC(C)CCC[C....
3 3N9Z - HC9 C27 H46 O2 C[C@@H]([C....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3N9Y - CLR C27 H46 O CC(C)CCC[C....
2 3NA1 - HCD C27 H46 O2 CC(C)CCC[C....
3 3N9Z - HC9 C27 H46 O2 C[C@@H]([C....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3NA0 - 2DC C27 H46 O3 CC(C)CC[C@....
2 3N9Y - CLR C27 H46 O CC(C)CCC[C....
3 3NA1 - HCD C27 H46 O2 CC(C)CCC[C....
4 3N9Z - HC9 C27 H46 O2 C[C@@H]([C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: HCD; Similar ligands found: 11
No: Ligand ECFP6 Tc MDL keys Tc
1 HC2 1 1
2 HCD 1 1
3 2DC 0.682353 0.902439
4 HC3 0.595506 1
5 CLR 0.58427 0.921053
6 HC9 0.549451 0.973684
7 PLO 0.505747 0.846154
8 0T9 0.442308 0.809524
9 L39 0.438095 0.772727
10 AND 0.436782 0.846154
11 C3S 0.427184 0.614035
Similar Ligands (3D)
Ligand no: 1; Ligand: HCD; Similar ligands found: 9
No: Ligand Similarity coefficient
1 K2B 0.9625
2 5JK 0.9592
3 ERG 0.9356
4 HCR 0.9354
5 DL7 0.9138
6 TH2 0.8992
7 98H 0.8968
8 LAN 0.8873
9 HE7 0.8812
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N9Y; Ligand: CLR; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3n9y.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3N9Y; Ligand: CLR; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3n9y.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
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