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Receptor
PDB id Resolution Class Description Source Keywords
3OFK 1.85 Å EC: 2.1.1.- CRYSTAL STRUCTURE OF N-METHYLTRANSFERASE NODS FROM BRADYRHIZ JAPONICUM WM9 IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE (SA BRADYRHIZOBIUM SP. NODS N-METHYLTRANSFERASE SAH SAM NOD FACTOR NODULATIONFIXATION SYMBIOSIS ALPHA/BETA STRUCTURE VARIANT OF ROSSMSAM-DEPENDENT N-METHYLTRANSFERASE S-ADENOSYL-L-METHIONINE LIPOCHITOOLIGOSACCHARIDE METHYLATION TRANSFERASE
Ref.: CRYSTAL STRUCTURES OF NODS N-METHYLTRANSFERASE FROM BRADYRHIZOBIUM JAPONICUM IN LIGAND-FREE FORM AND AS COMPLEX. J.MOL.BIOL. V. 404 874 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SAH A:217;
B:217;
C:217;
D:217;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3OFK 1.85 Å EC: 2.1.1.- CRYSTAL STRUCTURE OF N-METHYLTRANSFERASE NODS FROM BRADYRHIZ JAPONICUM WM9 IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE (SA BRADYRHIZOBIUM SP. NODS N-METHYLTRANSFERASE SAH SAM NOD FACTOR NODULATIONFIXATION SYMBIOSIS ALPHA/BETA STRUCTURE VARIANT OF ROSSMSAM-DEPENDENT N-METHYLTRANSFERASE S-ADENOSYL-L-METHIONINE LIPOCHITOOLIGOSACCHARIDE METHYLATION TRANSFERASE
Ref.: CRYSTAL STRUCTURES OF NODS N-METHYLTRANSFERASE FROM BRADYRHIZOBIUM JAPONICUM IN LIGAND-FREE FORM AND AS COMPLEX. J.MOL.BIOL. V. 404 874 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 60 families.
1 3OFK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 54 families.
1 3OFK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 47 families.
1 3OFK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAH; Similar ligands found: 211
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 DSH 0.692308 0.914286
6 SXZ 0.692308 0.916667
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 ADN 0.573333 0.84058
19 RAB 0.573333 0.84058
20 XYA 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SMM 0.536842 0.88
28 SSA 0.536842 0.712644
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 A 0.529412 0.763158
36 LMS 0.529412 0.694118
37 AMP 0.529412 0.763158
38 5CA 0.525773 0.712644
39 ME8 0.524752 0.8125
40 M2T 0.52439 0.821918
41 6RE 0.523256 0.824324
42 GJV 0.522727 0.813333
43 AAT 0.515789 0.863014
44 LSS 0.515152 0.696629
45 KAA 0.514852 0.727273
46 J7C 0.511364 0.835616
47 A5A 0.510417 0.697674
48 SON 0.505495 0.805195
49 SRP 0.505155 0.805195
50 F0P 0.504505 0.915493
51 54H 0.5 0.681818
52 VMS 0.5 0.681818
53 ADX 0.5 0.694118
54 CA0 0.5 0.769231
55 AMO 0.5 0.805195
56 5AL 0.5 0.779221
57 KH3 0.5 0.866667
58 NVA LMS 0.49505 0.707865
59 AHX 0.49505 0.753086
60 TSB 0.494949 0.689655
61 53H 0.494949 0.674157
62 G5A 0.494737 0.712644
63 ABM 0.494382 0.74359
64 A2D 0.494382 0.74359
65 ZAS 0.494253 0.808219
66 A6D 0.490196 0.759494
67 8QN 0.49 0.779221
68 GEK 0.49 0.956522
69 GAP 0.489583 0.769231
70 AN2 0.48913 0.734177
71 A3S 0.48913 0.884058
72 S4M 0.488889 0.831169
73 SRA 0.488636 0.746835
74 LAD 0.485437 0.810127
75 52H 0.484848 0.674157
76 A12 0.483516 0.759494
77 BA3 0.483516 0.74359
78 AP2 0.483516 0.759494
79 NEC 0.483146 0.788732
80 AOC 0.483146 0.842857
81 Y3J 0.481481 0.768116
82 VRT 0.479167 0.861111
83 50T 0.478723 0.734177
84 B4P 0.478261 0.74359
85 ADP 0.478261 0.74359
86 5AS 0.478261 0.655556
87 AP5 0.478261 0.74359
88 A3N 0.477778 0.830986
89 YSA 0.476636 0.712644
90 XAH 0.476636 0.768293
91 0XU 0.473684 0.897059
92 AT4 0.473118 0.7375
93 WAQ 0.471154 0.807692
94 NSS 0.470588 0.712644
95 5AD 0.468354 0.791045
96 AU1 0.468085 0.725
97 M33 0.468085 0.734177
98 MAO 0.467391 0.797468
99 TXA 0.466667 0.759494
100 NB8 0.466667 0.775
101 A3G 0.466667 0.871429
102 3AM 0.465909 0.727273
103 DAL AMP 0.465347 0.779221
104 8X1 0.465347 0.707865
105 A3T 0.463158 0.842857
106 ATP 0.463158 0.74359
107 HEJ 0.463158 0.74359
108 ACP 0.463158 0.746835
109 7D7 0.4625 0.785714
110 LEU LMS 0.461538 0.688889
111 9ZA 0.460784 0.740741
112 9ZD 0.460784 0.740741
113 5FA 0.458333 0.74359
114 AQP 0.458333 0.74359
115 AR6 0.458333 0.766234
116 APC 0.458333 0.759494
117 APR 0.458333 0.766234
118 PRX 0.458333 0.746835
119 F2R 0.457627 0.75
120 IOT 0.456897 0.761905
121 4AD 0.456311 0.794872
122 PAJ 0.456311 0.722892
123 WSA 0.45614 0.72093
124 YAP 0.453704 0.794872
125 8PZ 0.453704 0.712644
126 FA5 0.453704 0.805195
127 ADP PO3 0.453608 0.763158
128 ADV 0.453608 0.782051
129 NVA 2AD 0.453608 0.849315
130 SAP 0.453608 0.728395
131 AGS 0.453608 0.728395
132 RBY 0.453608 0.782051
133 AD9 0.453608 0.725
134 PTJ 0.45283 0.731707
135 MHZ 0.452632 0.797468
136 00A 0.451923 0.740741
137 A3P 0.451613 0.74026
138 YLP 0.451327 0.771084
139 7MD 0.45045 0.768293
140 ALF ADP 0.45 0.707317
141 ADP ALF 0.45 0.707317
142 2VA 0.447917 0.819444
143 OOB 0.446602 0.779221
144 ANP 0.444444 0.725
145 T99 0.444444 0.7375
146 ACQ 0.444444 0.746835
147 TAT 0.444444 0.7375
148 P5A 0.443396 0.719101
149 7D5 0.443182 0.708861
150 A1R 0.442308 0.7625
151 YLC 0.439655 0.790123
152 2AM 0.438202 0.717949
153 DLL 0.438095 0.779221
154 ARG AMP 0.4375 0.759036
155 A22 0.436893 0.734177
156 D3Y 0.436893 0.859155
157 ATF 0.435644 0.716049
158 MYR AMP 0.435185 0.746988
159 80F 0.434426 0.75
160 SO8 0.434343 0.808219
161 OAD 0.433962 0.769231
162 3UK 0.433962 0.769231
163 TAD 0.433628 0.765432
164 25A 0.432692 0.74359
165 6YZ 0.431373 0.746835
166 VO4 ADP 0.431373 0.734177
167 ADP VO4 0.431373 0.734177
168 9SN 0.431193 0.731707
169 TYM 0.431034 0.805195
170 B5V 0.429907 0.759494
171 PR8 0.429907 0.8
172 ADQ 0.428571 0.746835
173 YLB 0.42735 0.771084
174 9K8 0.425926 0.67033
175 1ZZ 0.425926 0.746988
176 FYA 0.425926 0.779221
177 3OD 0.425926 0.769231
178 PPS 0.425743 0.674419
179 MAP 0.423077 0.707317
180 A2P 0.421053 0.727273
181 4YB 0.421053 0.735632
182 9X8 0.420561 0.75
183 ADP BMA 0.420561 0.746835
184 TYR AMP 0.419643 0.794872
185 5SV 0.419048 0.731707
186 3NZ 0.416667 0.824324
187 YLA 0.416667 0.771084
188 8Q2 0.415254 0.688889
189 A3R 0.415094 0.7625
190 B5Y 0.414414 0.75
191 B5M 0.414414 0.75
192 48N 0.413793 0.753086
193 LPA AMP 0.413793 0.768293
194 AYB 0.413223 0.761905
195 ACK 0.413043 0.710526
196 QQY 0.413043 0.696203
197 BIS 0.412844 0.719512
198 JB6 0.412844 0.7625
199 PAP 0.41 0.730769
200 DQV 0.408696 0.75641
201 OVE 0.408602 0.7125
202 AMP DBH 0.40708 0.746835
203 4UV 0.40708 0.75
204 3AD 0.406977 0.852941
205 AF3 ADP 3PG 0.40678 0.743902
206 OMR 0.40678 0.738095
207 LAQ 0.405172 0.768293
208 A A 0.40367 0.74359
209 7C5 0.403509 0.789474
210 7MC 0.403361 0.75
211 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3OFK; Ligand: SAH; Similar sites found with APoc: 742
This union binding pocket(no: 1) in the query (biounit: 3ofk.bio3) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 3HVJ 705 None
2 4LWP SAH None
3 5YJF SAH None
4 2I7C AAT None
5 1R18 SAH None
6 2DT5 NAD None
7 4POO SAM None
8 1GR0 NAD None
9 2A92 NAI None
10 5YJF 8WO None
11 1SQL GUN None
12 1ZEM NAD 0.925926
13 4D42 NAP 0.925926
14 4D42 W0I 0.925926
15 2DTX BMA 0.925926
16 2XHK AKG 0.925926
17 5FTW SAH 1.38889
18 2CDU FAD 1.38889
19 5X68 FAD 1.38889
20 1P77 ATR 1.38889
21 2CDU ADP 1.38889
22 1YXM ADE 1.38889
23 1LTH NAD 1.38889
24 1UXG FUM 1.38889
25 1UXG NAD 1.38889
26 2HK9 ATR 1.38889
27 6DUB SAH 1.85185
28 4KIB SAH 1.85185
29 2Z3Y F2N 1.85185
30 4REP FAD 1.85185
31 1X87 NAD 1.85185
32 3WV8 ATP 1.85185
33 3FXU TSU 1.85185
34 3CGD FAD 1.85185
35 3CGD COA 1.85185
36 4OM8 NAD 1.85185
37 5JGL SAM 1.85185
38 3CGD NAD 1.85185
39 3CGB FAD 1.85185
40 5GWX SAM 1.85185
41 5GWX SAR 1.85185
42 1ZGA SAH 1.85185
43 5UR0 NAD 1.85185
44 3RKR NAP 1.85185
45 5Z75 NAD 1.85185
46 6H3O FAD 1.85185
47 1GEG NAD 1.85185
48 4RVG TYD 2.31481
49 4RVG SAM 2.31481
50 5MPT SAH 2.31481
51 6C8R SAH 2.31481
52 1L1E SAH 2.31481
53 6C8R EQV 2.31481
54 3LZW NAP 2.31481
55 4J36 1HR 2.31481
56 3LZW FAD 2.31481
57 5OC1 FAD 2.31481
58 1NAA 6FA 2.31481
59 1NAA ABL 2.31481
60 4J36 FAD 2.31481
61 4USQ FAD 2.31481
62 2PT9 2MH 2.31481
63 2PT9 S4M 2.31481
64 4GKV NAD 2.31481
65 3VYW SAM 2.31481
66 4AT0 FAD 2.31481
67 4EUE NAI 2.31481
68 4URF NAD 2.31481
69 3QOX SAH 2.31481
70 1YKJ PHB 2.31481
71 1YKJ FAD 2.31481
72 4NBU NAI 2.31481
73 4UBS DIF 2.31481
74 3TN7 NJP 2.31481
75 1U3G ADP 2.6455
76 1O5O U5P 2.71493
77 1ELI PYC 2.77778
78 3VSE SAH 2.77778
79 1RSG FAD 2.77778
80 1V6A TRE 2.77778
81 4AP3 FAD 2.77778
82 4AP3 NAP 2.77778
83 1YY5 FAD 2.77778
84 4IV9 FAD 2.77778
85 5J5Z FAD 2.77778
86 2QA1 FAD 2.77778
87 1I8T FAD 2.77778
88 5TTJ FAD 2.77778
89 5MBX FAD 2.77778
90 5MBX SP5 2.77778
91 3G2O SAM 2.77778
92 1H82 FAD 2.77778
93 4HA6 FAD 2.77778
94 2BRY FAD 2.77778
95 1H82 GZZ 2.77778
96 4TXI FAD 2.77778
97 2F5Z FAD 2.77778
98 4C3Y FAD 2.77778
99 3K7M FAD 2.77778
100 4C3Y ANB 2.77778
101 5YU3 PRO 2.77778
102 5YU3 NAD 2.77778
103 3GDN HBX 2.77778
104 3GDN FAD 2.77778
105 1PN0 FAD 2.77778
106 1PN0 IPH 2.77778
107 2RGJ FAD 2.77778
108 5WGR FAD 2.77778
109 5UFN SAH 2.77778
110 3MQ2 SAH 2.77778
111 5TOW ADN 2.77778
112 5TOW NAI 2.77778
113 3A25 SAM 2.77778
114 5EXA 5SO 2.77778
115 5O42 BGC 2.77778
116 5O42 NAD 2.77778
117 5O42 9JW 2.77778
118 5K0A FAD 2.77778
119 3LAD FAD 2.77778
120 3GXO SAH 2.77778
121 5YEC ATP 2.77778
122 3GWZ SAH 2.77778
123 4KGD TDP 2.77778
124 4KGD FAD 2.77778
125 5K4W THR 2.77778
126 5K4W NAI 2.77778
127 3ITJ FAD 2.77778
128 6FP4 FAD 2.77778
129 6GNA FAD 2.77778
130 1PJS NAD 2.77778
131 6FP4 E1T 2.77778
132 2E7Z MGD 2.77778
133 2BD0 NAP 2.77778
134 4UP3 FAD 2.77778
135 6CEP NAD 2.77778
136 1BDB NAD 2.77778
137 4KRI SAH 3.24074
138 2EJU SAH 3.24074
139 3FPF TNA 3.24074
140 3PFG TLO 3.24074
141 3PFG SAM 3.24074
142 2IZ1 ATR 3.24074
143 3FPF MTA 3.24074
144 2C7G FAD 3.24074
145 2C7G ODP 3.24074
146 4JNA FAD 3.24074
147 4X9M FAD 3.24074
148 5J7X FAD 3.24074
149 2XVF FAD 3.24074
150 3C6K SPD 3.24074
151 4U8P FDA 3.24074
152 4U8P UDP 3.24074
153 4J4H 1J1 3.24074
154 4J4H NAI 3.24074
155 6GAS FAD 3.24074
156 5M67 ADE 3.24074
157 3C6K MTA 3.24074
158 5M67 NAD 3.24074
159 6F3M NAD 3.24074
160 5MW4 5JU 3.24074
161 3TKY SAH 3.24074
162 6F3N ADN 3.24074
163 6F3N NAD 3.24074
164 4YNU FAD 3.24074
165 4YNU LGC 3.24074
166 4JK3 NAD 3.24074
167 6FHO FAD 3.24074
168 5EB4 FAD 3.24074
169 1LVL NAD 3.24074
170 4DCM SAM 3.24074
171 5YF1 SFG 3.24074
172 5YF1 8V0 3.24074
173 3NT6 FAD 3.24074
174 1LVL FAD 3.24074
175 5M67 3D1 3.24074
176 3NTD FAD 3.24074
177 1OMO NAD 3.24074
178 3NTA FAD 3.24074
179 3H5N ATP 3.24074
180 6E1Q CFA 3.24074
181 2C5A GDC 3.24074
182 2C5A NAD 3.24074
183 5U8U FAD 3.24074
184 2IXB NAD 3.24074
185 5YB7 ORN 3.24074
186 2EWM NAD 3.24074
187 4PLG OXM 3.24074
188 4PLG NAI 3.24074
189 5YB7 FAD 3.24074
190 2IXB A2G 3.24074
191 2VHW NAI 3.24074
192 1VDC FAD 3.24074
193 4YT4 FE9 3.24074
194 1OC2 TDX 3.24074
195 1OC2 NAD 3.24074
196 6ECU SAH 3.7037
197 6ECW SAH 3.7037
198 5ZYN FAD 3.7037
199 1COY FAD 3.7037
200 4YAC NAI 3.7037
201 1I9G SAM 3.7037
202 2VDV SAM 3.7037
203 1KPG SAH 3.7037
204 1KPH SAH 3.7037
205 3E1T FAD 3.7037
206 2PWY SAH 3.7037
207 3GF4 UPG 3.7037
208 3G5S FAD 3.7037
209 3GF4 FAD 3.7037
210 5BUK FAD 3.7037
211 1COY AND 3.7037
212 3S5W FAD 3.7037
213 4USR FAD 3.7037
214 3WLE NAD 3.7037
215 3NYC FAD 3.7037
216 3NYC IAR 3.7037
217 5BRT CH9 3.7037
218 5BRT FAD 3.7037
219 4JDR FAD 3.7037
220 3AYI FAD 3.7037
221 3AYI HCI 3.7037
222 4BV6 FAD 3.7037
223 3GD4 FAD 3.7037
224 3GD4 NAD 3.7037
225 5MIT FAD 3.7037
226 5MIT NAP 3.7037
227 4RSL FAD 3.7037
228 4YAG NAI 3.7037
229 2CUL FAD 3.7037
230 5TUF FAD 3.7037
231 2GMH FAD 3.7037
232 5LXB 7A9 3.7037
233 3RS8 ALA TRP LEU PHE GLU ALA 3.7037
234 3RFV NAI 3.7037
235 5JJR SAH 3.7037
236 5TUF TDC 3.7037
237 5EOW FAD 3.7037
238 5HJM MTA 3.7037
239 3RFV 15L 3.7037
240 1U2Z SAH 3.7037
241 1NW5 SAM 3.7037
242 5CUQ NSC 3.7037
243 6F5W KG1 3.7037
244 1Z45 NAD 3.7037
245 1G55 SAH 3.7037
246 3IHG FAD 3.7037
247 5OJ7 AR6 3.7037
248 3A4V PYR 3.7037
249 1UP7 NAD 3.7037
250 3ELW SAM 3.7037
251 1M2K APR 3.7037
252 3A4V NAD 3.7037
253 3FG2 FAD 3.7037
254 3ELW GP3 3.7037
255 3VPH OXM 3.7037
256 1XHC FAD 4.08719
257 6ECT SAM 4.16667
258 2HMT NAI 4.16667
259 1JQD SAH 4.16667
260 2AOT SAH 4.16667
261 6ER9 FAD 4.16667
262 6ER9 NAP 4.16667
263 1YQZ FAD 4.16667
264 4PIO SAH 4.16667
265 4PIO AVI 4.16667
266 1JQD HSM 4.16667
267 4X7Y SAH 4.16667
268 3KLJ FAD 4.16667
269 3DXY SAM 4.16667
270 1BW9 NAD 4.16667
271 5BJX NAD 4.16667
272 5BJX UDP 4.16667
273 2RAB NAD 4.16667
274 3LXD FAD 4.16667
275 6AIN FAD 4.16667
276 2RAB FAD 4.16667
277 6BQ6 TER 4.16667
278 4ITU NAI 4.16667
279 4ITU 1HS 4.16667
280 4MP8 MLI 4.16667
281 4MP8 NAD 4.16667
282 4BLW AMP 4.16667
283 2GDZ NAD 4.16667
284 4CQM NAP 4.16667
285 1C0I BE2 4.16667
286 1C0I FAD 4.16667
287 4HXY NDP 4.16667
288 1GPM AMP 4.16667
289 4BLW SAH 4.16667
290 1KOL NAD 4.16667
291 4XUC 43G 4.16667
292 4XUC SAM 4.16667
293 1E5Q NDP 4.16667
294 4E5N NAD 4.16667
295 3V1Y NAD 4.16667
296 5JLB SAH 4.16667
297 4Z0H NAD 4.16667
298 2HNK SAH 4.1841
299 5ZZ6 ADP 4.32692
300 5ZZ6 NAD 4.32692
301 2PX8 SAH 4.46097
302 1Q7L GLY 4.54545
303 4RDI ATP 4.62963
304 5F2K SAH 4.62963
305 5F2K OCA 4.62963
306 4D79 ATP 4.62963
307 1E1M FAD 4.62963
308 1E1M NAP 4.62963
309 3LST SAH 4.62963
310 1QO8 FAD 4.62963
311 2Q7V FAD 4.62963
312 5NMX NAP 4.62963
313 1V8B NAD 4.62963
314 1Q9I FAD 4.62963
315 1Q9I TEO 4.62963
316 3LCV SAM 4.62963
317 5NMX FAD 4.62963
318 3RNM FAD 4.62963
319 4EMI FAD 4.62963
320 4RDH AMP 4.62963
321 4EMI NAD 4.62963
322 4Z24 FAD 4.62963
323 4EMJ FAD 4.62963
324 5KMS NAD 4.62963
325 1FP1 SAH 4.62963
326 5E1M PRO PRO LYS ARG ILE ALA 4.62963
327 5E1M SAH 4.62963
328 3P2E SAH 4.62963
329 1G60 SAM 4.62963
330 4B4U NAP 4.62963
331 3OZ2 FAD 4.62963
332 3WGT QSC 4.62963
333 3WGT FAD 4.62963
334 6C5B SAH 4.62963
335 2YX1 SFG 4.62963
336 2B9W FAD 4.62963
337 5KOX FAD 4.62963
338 5KOX RFP 4.62963
339 5KMS FAD 4.62963
340 4EIP FAD 4.62963
341 1DL5 SAH 4.62963
342 1HYH NAD 4.62963
343 1J0X NAD 4.62963
344 1S7G APR 4.62963
345 5HXI FAD 4.62963
346 1DJN ADP 4.62963
347 5HXI 5HN 4.62963
348 5KOK S9T 4.78589
349 5KOK SAH 4.78589
350 5KOK R9T 4.78589
351 3H2B SAH 4.92611
352 1JG3 ADN 5.09259
353 1Q1R FAD 5.09259
354 5FJN FAD 5.09259
355 5FJN BE2 5.09259
356 3NJ4 NAD 5.09259
357 4K5S FAD 5.09259
358 4K5S PM0 5.09259
359 5ULP KB1 5.09259
360 2IVD FAD 5.09259
361 1X7D ORN 5.09259
362 2Q0L FAD 5.09259
363 1X7D NAD 5.09259
364 1XDS SAM 5.09259
365 5JWC FAD 5.09259
366 1QZZ SAM 5.09259
367 3NJ4 AFX 5.09259
368 6BGC BGC 5.09259
369 4N14 WR7 5.09259
370 3NKS FAD 5.09259
371 4FN4 NAD 5.09259
372 1PR9 NAP 5.09259
373 4D5G FAD 5.09259
374 4D5G TPP 5.09259
375 4ZVV NAD 5.09259
376 4ZVV GN0 5.09259
377 4A9C B5F 5.09259
378 3OJO NAD 5.09259
379 1DSS NAD 5.09259
380 3D3W NAP 5.09259
381 5JE8 NAD 5.09259
382 1GY8 NAD 5.09259
383 3H8V ATP 5.13699
384 3WH2 FLC 5.44218
385 6GKV SAH 5.55556
386 5FUB SAH 5.55556
387 4MOP 2H5 5.55556
388 3CTY FAD 5.55556
389 1D4D FAD 5.55556
390 5N5D SAM 5.55556
391 5BVA FAD 5.55556
392 4B63 ORN 5.55556
393 4B63 NAP 5.55556
394 4B63 FAD 5.55556
395 4TM3 FAD 5.55556
396 1JQ3 AAT 5.55556
397 1GET NAP 5.55556
398 1GET FAD 5.55556
399 2HQM FAD 5.55556
400 4D7E FAD 5.55556
401 2Y6Q FAD 5.55556
402 2Y6Q I7T 5.55556
403 2ZXI FAD 5.55556
404 4DMG SAM 5.55556
405 1FP2 SAH 5.55556
406 3BGD PM6 5.55556
407 3BGD SAH 5.55556
408 2BZG SAH 5.55556
409 1XHL NDP 5.55556
410 2NYA MGD 5.55556
411 2VPY MGD 5.55556
412 3RIY NAD 5.55556
413 3SJU NDP 5.55556
414 5DF1 58X 5.55556
415 5DF1 NAP 5.55556
416 2ZFU SAH 5.5814
417 4GQB 0XU 6.01852
418 5FA5 MTA 6.01852
419 1UWK NAD 6.01852
420 1UWK URO 6.01852
421 5VN0 FAD 6.01852
422 5JCA NDP 6.01852
423 5JCA FAD 6.01852
424 2XVE FAD 6.01852
425 6F97 FAD 6.01852
426 2A14 SAH 6.01852
427 3S1S SAH 6.01852
428 5VN0 NAI 6.01852
429 1R37 NAD 6.01852
430 1X14 NAD 6.01852
431 2DPM SAM 6.01852
432 4YKG FAD 6.01852
433 4YKG NAD 6.01852
434 2Q28 ADP 6.01852
435 2C31 ADP 6.01852
436 2C31 TZD 6.01852
437 2F7C CCU 6.01852
438 5D4V SAH 6.01852
439 4M52 FAD 6.01852
440 2HZL PYR 6.01852
441 3QVP FAD 6.01852
442 1WDI CIT 6.01852
443 1E6E FAD 6.25
444 3FPZ AHZ 6.48148
445 2VVM FAD 6.48148
446 2VVL FAD 6.48148
447 5J60 FAD 6.48148
448 1ZK7 FAD 6.48148
449 4OPC PGT 6.48148
450 4OPC FDA 6.48148
451 3X0V FAD 6.48148
452 2RGO FAD 6.48148
453 1V59 NAD 6.48148
454 4XQC 13D 6.48148
455 4XQC NAD 6.48148
456 4NTC FAD 6.48148
457 2Q1S NAI 6.48148
458 5MZI FYK 6.48148
459 5MZI FAD 6.48148
460 1V59 FAD 6.48148
461 5Y77 FAD 6.48148
462 1EFV FAD 6.48148
463 1EFV AMP 6.48148
464 5Y8L HUI 6.48148
465 5Y8L NAD 6.48148
466 4J56 FAD 6.48148
467 2WA2 SAM 6.48148
468 5W7R SAH 6.48148
469 4L2I FAD 6.48148
470 1EK6 UPG 6.48148
471 1MV8 NAD 6.48148
472 1MUU NAD 6.48148
473 1EK6 NAI 6.48148
474 5ICE 2H4 6.48148
475 5ICE SAH 6.48148
476 1J49 NAD 6.48148
477 1Z3C SA8 6.94444
478 5TWB FAD 6.94444
479 4D04 FAD 6.94444
480 4D04 NAP 6.94444
481 2UYQ SAM 6.94444
482 1REO FAD 6.94444
483 3HDY FDA 6.94444
484 3HDY GDU 6.94444
485 3HDY FAD 6.94444
486 3UOY FAD 6.94444
487 3UOY NAP 6.94444
488 4NTD FAD 6.94444
489 5E72 SAM 6.94444
490 3NUG NAD 6.94444
491 3LKZ SFG 6.94444
492 5FWA J7C 6.94444
493 2NVK NAP 6.94444
494 1GTE FAD 6.94444
495 2JHP SAH 6.94444
496 5THQ NDP 6.94444
497 5L95 AMP 6.94444
498 1O97 FAD 6.94444
499 2NVK FAD 6.94444
500 1O97 AMP 6.94444
501 9LDB NAD 6.94444
502 9LDT NAD 6.94444
503 1BZL GCG 6.94444
504 1O94 ADP 6.94444
505 1WDK NAD 6.94444
506 3GJB AKG 6.94444
507 1BZL FAD 6.94444
508 3H9E NAD 6.94444
509 1LSS NAD 7.14286
510 5GM1 SAH 7.40741
511 3UCL FAD 7.40741
512 3UCL NAP 7.40741
513 3UCL CYH 7.40741
514 4FWE FAD 7.40741
515 4ZCC NAI 7.40741
516 4ZCC FAD 7.40741
517 3QJ4 FAD 7.40741
518 3ICT FAD 7.40741
519 1TPY SAH 7.40741
520 3ICR FAD 7.40741
521 5KVA SAM 7.40741
522 3ICS FAD 7.40741
523 5BW4 SAM 7.40741
524 3OND ADN 7.40741
525 3OND NAD 7.40741
526 2O07 SPD 7.40741
527 2O07 MTA 7.40741
528 5NA1 FAD 7.40741
529 3ICT ADP 7.40741
530 3ICS ADP 7.40741
531 5O9F 9ON 7.40741
532 5O9F NAD 7.40741
533 3GEG NAD 7.40741
534 4PLT NAI 7.40741
535 4PLT OXM 7.40741
536 4PVR ASP 7.40741
537 1NVM NAD 7.40741
538 6FDF SAH 7.40741
539 2GV8 FAD 7.87037
540 2GVC FAD 7.87037
541 1VQW FAD 7.87037
542 6B3A SAM 7.87037
543 2NPX FAD 7.87037
544 2NPX NAD 7.87037
545 3SQP FAD 7.87037
546 3L9W AMP 7.87037
547 3A27 SAM 7.87037
548 3L9W GSH 7.87037
549 1I1N SAH 7.87037
550 1YBH FAD 7.87037
551 3F8D FAD 7.87037
552 1RJW ETF 7.87037
553 5EJ2 NAD 7.87037
554 3NZ1 3NY 7.87037
555 3ABI NAD 7.87037
556 5MGZ SAH 8.33333
557 1Y8Q ATP 8.33333
558 5G3U FDA 8.33333
559 5G3U ITW 8.33333
560 3AD8 NAD 8.33333
561 5DNK SAH 8.33333
562 4Y9D NAI 8.33333
563 4RPL 3UC 8.33333
564 4RPL FAD 8.33333
565 4YUW 4JU 8.33333
566 4YUW S4M 8.33333
567 1KYZ SAH 8.33333
568 1F3L SAH 8.33333
569 2JB2 FAD 8.33333
570 2JB2 PHE 8.33333
571 3AD8 PYC 8.33333
572 3AD8 FAD 8.33333
573 5ZBC FAD 8.33333
574 1SOW NAD 8.33333
575 1H2B NAJ 8.33333
576 1FL2 FAD 8.33333
577 3GFB NAD 8.33333
578 4JGT PYR 8.3612
579 3FZG SAM 8.5
580 5T67 SAH 8.7963
581 5T67 JHZ 8.7963
582 6B92 SAH 8.7963
583 6GFK SAH 8.7963
584 3AXB PRO 8.7963
585 3AXB FAD 8.7963
586 3AB1 FAD 8.7963
587 2R4J 13P 8.7963
588 2R4J FAD 8.7963
589 5K7U SAM 8.7963
590 2ZIF SAM 8.7963
591 3QFA FAD 8.7963
592 5ODQ FAD 8.7963
593 1Q19 SSC 8.7963
594 1SQF SAM 8.7963
595 2GAG NAD 9.09091
596 2GAG FOA 9.09091
597 2GAG FAD 9.09091
598 5XNC MTA 9.25926
599 1PS9 FAD 9.25926
600 5I39 FAD 9.25926
601 1RP0 AHZ 9.25926
602 2ZJ1 NAD 9.25926
603 2ZJ1 ARJ 9.25926
604 1UAY ADN 9.25926
605 1GPE FAD 9.25926
606 4ZM4 PLP 9.25926
607 1VKO NAD 9.25926
608 4GUS FAD 9.72222
609 4HSU FAD 9.72222
610 4MO2 FDA 9.72222
611 4GUT FAD 9.72222
612 4MO2 FAD 9.72222
613 5JCM ISD 9.72222
614 5JCM FAD 9.72222
615 5JCM NAD 9.72222
616 3GCZ SAM 9.72222
617 5O4J 9KH 9.72222
618 5O4J SAH 9.72222
619 5O4J PJL 9.72222
620 2VYN NAD 9.72222
621 4OBW SAM 10.1852
622 3JWH SAH 10.1852
623 6ARJ BW4 10.1852
624 5DWQ SFG 10.1852
625 6ARJ SAH 10.1852
626 5DX8 SFG 10.1852
627 5DXA SFG 10.1852
628 1Q0S SAH 10.1852
629 5DX0 SFG 10.1852
630 5DX1 SFG 10.1852
631 5GWT SIN 10.1852
632 5GWT NAD 10.1852
633 3GMB FAD 10.1852
634 1QAN SAH 10.6481
635 2YG3 FAD 10.6481
636 2DKH FAD 10.6481
637 2DKH 3HB 10.6481
638 1IY8 NAD 10.6481
639 1XG5 NAP 10.6481
640 4J1Q NDP 10.6481
641 1RYI FAD 11.1111
642 1RYI GOA 11.1111
643 3C3Y SAH 11.1111
644 4II2 ATP 11.1111
645 1MO9 FAD 11.1111
646 1KNR FAD 11.1111
647 1MO9 KPC 11.1111
648 1JNR FAD 11.1111
649 3CH6 311 11.1111
650 3CH6 NAP 11.1111
651 1RM0 NAI 11.1111
652 2VT3 ATP 11.1628
653 2WET FAD 11.5741
654 2WSB NAD 11.5741
655 3EVG SAH 11.5741
656 1XKQ NDP 11.5741
657 2P41 SAH 11.5741
658 5U19 SAH 12.037
659 5U19 827 12.037
660 4DSG UDP 12.037
661 4DSG FAD 12.037
662 5HSA FAS 12.037
663 5N6C NAD 12.037
664 1SC6 NAD 12.037
665 4YSX FAD 12.234
666 3MB5 SAM 12.5
667 1KYQ NAD 12.5
668 5TUK FAD 12.5
669 6GAR FAD 12.963
670 3MAG SAH 13.4259
671 4CNK FAD 13.4259
672 5X62 SAH 13.4259
673 3MCT SAH 13.4259
674 3PT9 SAH 13.4259
675 5BSZ SAH 13.8889
676 5XLX SAH 13.8889
677 2DFV NAD 13.8889
678 5O0J 8BR 14.3519
679 4YRY NAD 14.8148
680 2OBF SAH 14.8148
681 2OBF F83 14.8148
682 4YRY FAD 14.8148
683 4YMH SAH 14.8148
684 2OOR NAD 14.9425
685 5LOG SAH 15.2778
686 1T26 NAI 15.2778
687 1T26 GBD 15.2778
688 2IID FAD 15.7407
689 2IID PHE 15.7407
690 5ERG SAM 16.2037
691 5TS5 FAD 16.2037
692 3TKA SAM 16.2037
693 4AZW SAM 16.6667
694 5W7M SAH 16.6667
695 1BC5 SAH 16.6667
696 5FQ0 FLC 16.6667
697 1XCL SAH 17.1296
698 5GSN NAP 17.1296
699 5GSN FAD 17.1296
700 5GSN MMZ 17.1296
701 5YJI 8WO 17.5926
702 5YJI SAH 17.5926
703 6F7L FAD 17.5926
704 2G5C NAD 17.5926
705 5XWV NDP 17.5926
706 5XWV 8H6 17.5926
707 4R6W PC 18.0556
708 4R6W SAH 18.0556
709 3BXO SAM 18.0556
710 4KRG SAH 18.0556
711 3T7S SAM 18.5185
712 1P1C SAH 18.593
713 5FA8 SAM 18.6335
714 3OU2 SAH 19.4444
715 5JE0 SAH 19.4444
716 5JE0 AZ8 19.4444
717 6HL8 GUA 19.4444
718 3GGO ENO 19.9074
719 3GGO NAI 19.9074
720 1XTP SAI 20.3704
721 5F8F SFG 20.3704
722 3ZNN 4WL 20.3704
723 3ZNN FAD 20.3704
724 5E9W SAH 20.8333
725 5W7K SAH 20.8333
726 1VE3 SAM 20.8333
727 5WP4 SAH 20.8333
728 5E8J SAH 20.8333
729 1L3I SAH 21.875
730 2PXX SAH 22.3256
731 2YVJ NAI 23.1481
732 2YVF NAD 23.1481
733 2YVJ FAD 23.1481
734 4PNE SAH 24.0741
735 5THY SAH 24.537
736 5THZ SAH 24.537
737 3Q87 SAM 24.7059
738 4MIG G3F 25.9259
739 2XVM SAH 27.6382
740 4A6D SAM 27.7778
741 4NEC SAH 32.4074
742 6F5Z SAH 34.4262
Pocket No.: 2; Query (leader) PDB : 3OFK; Ligand: SAH; Similar sites found with APoc: 201
This union binding pocket(no: 2) in the query (biounit: 3ofk.bio4) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 1PL6 NAD None
2 2FKA BEF None
3 1PL6 572 None
4 2YY7 NAD 0.925926
5 2HJR APR 0.925926
6 3LU1 NAD 0.925926
7 1E3W NAD 1.38889
8 4BUZ OCZ 1.38889
9 4BUZ NAD 1.38889
10 4BUZ OAD 1.38889
11 1E6W NAD 1.38889
12 2BGM NAJ 1.38889
13 6AA8 NAD 1.38889
14 3U31 NAD 1.38889
15 1YC5 NCA 1.38889
16 1SB8 UD2 1.38889
17 1SB8 NAD 1.38889
18 2A9W UMP 1.38889
19 1ZH8 NAP 1.38889
20 5DN9 NAD 1.85185
21 3WDM ADN 1.85185
22 3OA2 NAD 1.85185
23 2GN3 MMA 1.85185
24 2NAD NAD 1.85185
25 2GMM MAN MAN 1.85185
26 2FR1 NDP 2.31481
27 4B16 NAG 2.31481
28 1GV0 NAD 2.31481
29 4K26 NDP 2.31481
30 4K26 SFF 2.31481
31 1LDN NAD 2.31481
32 1FK8 NAD 2.31481
33 1EU1 MGD 2.31481
34 2GSD NAD 2.31481
35 1I2B USQ 2.31481
36 1I2B UPG 2.31481
37 1I2B NAD 2.31481
38 3RJ5 NAD 2.31481
39 2AQJ TRP 2.77778
40 2AQJ FAD 2.77778
41 2E5V FAD 2.77778
42 6CEP OXM 2.77778
43 4FC7 COA 2.77778
44 4FC7 NAP 2.77778
45 3Q9T FAY 2.77778
46 1GZ6 NAI 2.77778
47 3ZV6 4HB 2.77778
48 3ZV6 NAD 2.77778
49 5NII FAD 2.77778
50 6EQS BV8 2.77778
51 1F8F NAD 2.77778
52 3A28 NAD 2.77778
53 1EDO NAP 2.77778
54 2RBK VN4 2.77778
55 6DNT NAD 3.24074
56 1XSE NDP 3.24074
57 5WKC FAD 3.24074
58 1T9D PYD 3.24074
59 1T9D 1MM 3.24074
60 1T9D P25 3.24074
61 6GNC FAD 3.24074
62 1ZBQ NAD 3.24074
63 2VAP GDP 3.24074
64 1HKU NAD 3.24074
65 3O03 NAP 3.24074
66 1T9D FAD 3.24074
67 3WMX NAD 3.24074
68 1TDF NAP 3.24074
69 1TDF FAD 3.24074
70 2O4C NAD 3.24074
71 5JAQ NAI 3.24074
72 1D1T NAD 3.24074
73 1SAY PYR 3.60111
74 3VPH NAD 3.7037
75 5Z21 NAI 3.7037
76 4RQU NAD 3.7037
77 2AG5 NAD 3.7037
78 1PZG A3D 3.7037
79 4O0L NDP 3.7037
80 1KQF MGD 3.7037
81 3AFN NAP 3.7037
82 2Q1W NAD 3.7037
83 1C1X NAD 4.16667
84 4NBW NAD 4.16667
85 3V1U NAD 4.16667
86 5A3B APR 4.16667
87 1V5F TPP 4.16667
88 1V5F FAD 4.16667
89 1VL8 NAP 4.16667
90 4ZRN UPG 4.16667
91 2JAH NDP 4.16667
92 4ZRN NAD 4.16667
93 2FZW NAD 4.16667
94 1BXG NAD 4.16667
95 5MLR NAP 4.16667
96 5MLR GRQ 4.16667
97 4Y7E BMA BMA BMA 4.16667
98 3KO8 NAD 4.16667
99 6CI9 NAP 4.16667
100 1KEW TYD 4.62963
101 1KEW NAD 4.62963
102 1DLJ NAI 4.62963
103 1J5P NAD 4.62963
104 6CZ7 MGD 4.62963
105 3CIF NAD 4.62963
106 1S7G NAD 4.62963
107 3CIF G3H 4.62963
108 1HDG NAD 4.62963
109 4KM2 ATR 5.02793
110 1LDM NAD 5.09259
111 3HB5 NAP 5.09259
112 3U4C NDP 5.09259
113 1UDB NAD 5.09259
114 1UDB UFG 5.09259
115 3FWN ATR 5.09259
116 2WYV NAD 5.09259
117 2V6G NAP 5.09259
118 1A27 NAP 5.09259
119 2B4Q NAP 5.09259
120 5EZ7 FAD 5.09259
121 3SJ7 NDP 5.09259
122 5UAO FAD 5.55556
123 1DMR PGD 5.55556
124 6F9Q NAD 5.55556
125 4TQG NDP 5.55556
126 4ZA2 NAD 5.55556
127 4EDF UPG 5.55556
128 2IVF MGD 5.60748
129 4J7U YTZ 5.90278
130 4J7U NAP 5.90278
131 1R6D DAU 6.01852
132 1R6D NAD 6.01852
133 3L4S NAD 6.01852
134 3L4S 3PG 6.01852
135 1WVG APR 6.01852
136 1Z6Z NAP 6.02837
137 6BWL NAD 6.48148
138 5K8P 6R8 6.48148
139 6DEN TP9 6.94444
140 6DEN G8A 6.94444
141 6DEN FAD 6.94444
142 3EVF SAH 6.94444
143 3EVF GTA 6.94444
144 4GLL NAD 7.40741
145 2WPF WPF 7.40741
146 2WPF FAD 7.40741
147 1U7T TDT 7.40741
148 1BXK NAD 7.40741
149 1LLU NAD 7.40741
150 4JJF N2I 7.40741
151 4JJF FE9 7.40741
152 3ML1 MGD 7.40741
153 2GN4 UD1 7.40741
154 6HKE MLT 7.40741
155 1U7T NAD 7.40741
156 6HKE LMR 7.40741
157 4I5I NAD 7.40741
158 4BJZ FAD 7.87037
159 4BJZ P3A 7.87037
160 1GUZ NAD 7.87037
161 1NJR XYL 7.87037
162 5N0J FAD 7.97721
163 1OAA OAA 8.33333
164 1A5Z NAD 8.33333
165 1RKX NAD 8.33333
166 5OJI NAP 8.7963
167 5OJI ISN 8.7963
168 1U1I NAD 8.7963
169 1OBB NAD 8.7963
170 5IL1 SAM 8.96226
171 2JAP NDP 9.25926
172 3K5I AIR 9.25926
173 3T31 FAD 10.1852
174 3T31 DCQ 10.1852
175 4E70 N7I 10.1852
176 6EL3 NAP 10.1852
177 3P9C SAH 10.1852
178 2AG8 NAP 10.1852
179 2VTD LKM 10.6481
180 1I36 NAP 10.6481
181 2B4R NAD 10.6481
182 2B4R AES 10.6481
183 3Q3C NAD 11.0368
184 1RM0 D6P 11.1111
185 3O26 NDP 11.1111
186 2WDQ TEO 11.3043
187 1JXN MFU 12.037
188 5N53 8NB 13.3333
189 1ORR NAD 13.4259
190 3OID NDP 13.8889
191 5Z20 NAI 13.8889
192 3KB6 LAC 14.3519
193 1G0N NDP 14.8148
194 1G0N PHH 14.8148
195 1R27 MGD 16.6667
196 1E3I CXF 17.5926
197 1JG0 UMP 19.4444
198 3QV1 NAD 19.5122
199 4KXQ APR 20
200 2YVF FAD 23.1481
201 3EYA FAD 33.7963
Pocket No.: 3; Query (leader) PDB : 3OFK; Ligand: SAH; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 3ofk.bio2) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 2HIM ASN 1.38889
2 2GNB MAN 1.85185
3 3KYF 5GP 5GP 2.31481
4 1LYX PGA 3.24074
5 2A8X FAD 6.01852
6 4A6F SEP 7.5
7 3KP6 SAL 7.94702
8 3CF6 SP1 11.1111
Pocket No.: 4; Query (leader) PDB : 3OFK; Ligand: SAH; Similar sites found with APoc: 15
This union binding pocket(no: 4) in the query (biounit: 3ofk.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 2V3V MGD 2.77778
2 4UP3 NDP 2.77778
3 3PA8 621 2.77778
4 2JBH 5GP 3.24074
5 4XZ3 ACP 3.7037
6 1PZM 5GP 3.79147
7 2Y91 98J 4.16667
8 6B74 BEN 4.62963
9 4AGS GSH 4.62963
10 2Q0L NAP 5.09259
11 4P83 U5P 5.49451
12 4JX1 CAH 7.9646
13 1G8K MGD 8.33333
14 2P3V SRT 12.037
15 3MBI HSX 12.963
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