Receptor
PDB id Resolution Class Description Source Keywords
3RYC 2.1 Å NON-ENZYME: OTHER TUBULIN: RB3 STATHMIN-LIKE DOMAIN COMPLEX OVIS ARIES ALPHA-TUBULIN BETA-TUBULIN GTPASE MICROTUBULE STATHMIN SSUBTILISIN TUBULIN CELL CYCLE
Ref.: THE DETERMINANTS THAT GOVERN MICROTUBULE ASSEMBLY F ATOMIC STRUCTURE OF GTP-TUBULIN. J.MOL.BIOL. V. 412 35 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:600;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
GTP A:600;
D:600;
C:600;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
523.18 C10 H16 N5 O14 P3 c1nc2...
MG A:601;
C:601;
D:601;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
SO4 A:452;
A:453;
A:454;
A:455;
B:456;
B:457;
C:452;
C:453;
D:456;
D:457;
E:146;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3RYC 2.1 Å NON-ENZYME: OTHER TUBULIN: RB3 STATHMIN-LIKE DOMAIN COMPLEX OVIS ARIES ALPHA-TUBULIN BETA-TUBULIN GTPASE MICROTUBULE STATHMIN SSUBTILISIN TUBULIN CELL CYCLE
Ref.: THE DETERMINANTS THAT GOVERN MICROTUBULE ASSEMBLY F ATOMIC STRUCTURE OF GTP-TUBULIN. J.MOL.BIOL. V. 412 35 2011
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 3RYI - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 3RYC - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 3RYI - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 3RYC - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 3RYC - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Ligand no: 2; Ligand: GTP; Similar ligands found: 147
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 GNP 0.809524 0.973684
9 GCP 0.797619 0.973684
10 5GP 0.797468 0.986486
11 G 0.797468 0.986486
12 GMV 0.764706 0.973684
13 G2R 0.764045 0.961039
14 G5P 0.755319 0.973684
15 GTG 0.752688 0.936709
16 G2P 0.747126 0.961039
17 G3A 0.744681 0.973684
18 GDD 0.741935 0.961039
19 GKE 0.741935 0.961039
20 GDC 0.741935 0.961039
21 0O2 0.736264 0.986486
22 GP2 0.729412 0.961039
23 6CK 0.726316 0.936709
24 Y9Z 0.723404 0.902439
25 GPG 0.717391 0.961039
26 GFB 0.715789 0.961039
27 GDR 0.715789 0.961039
28 GDP MG 0.712644 0.923077
29 GDP BEF 0.704545 0.9
30 GPD 0.704082 0.925
31 JB2 0.693878 0.961039
32 GKD 0.693878 0.961039
33 GCP G 0.692308 0.935065
34 GDX 0.686869 0.973684
35 ALF 5GP 0.685393 0.888889
36 GTP MG 0.681319 0.923077
37 BEF GDP 0.681319 0.888889
38 GH3 0.681319 0.973333
39 YGP 0.677083 0.901235
40 G3D 0.67033 0.986486
41 GDP AF3 0.659574 0.888889
42 GDP ALF 0.659574 0.888889
43 DGT 0.659341 0.923077
44 GMP 0.658228 0.88
45 G4P 0.655914 0.986486
46 JB3 0.653846 0.948718
47 NGD 0.647619 0.961039
48 CAG 0.642202 0.880952
49 2MD 0.62963 0.891566
50 G G 0.622449 0.935065
51 MGP 0.619565 0.961039
52 U2G 0.616822 0.936709
53 6G0 0.612903 0.961039
54 MGD 0.612613 0.891566
55 TPG 0.608696 0.840909
56 CG2 0.605505 0.936709
57 GDP 7MG 0.601942 0.911392
58 FEG 0.601852 0.879518
59 ZGP 0.59633 0.869048
60 MD1 0.591304 0.891566
61 PGD 0.591304 0.925
62 3GP 0.590909 0.946667
63 GPX 0.581633 0.946667
64 DGI 0.580645 0.923077
65 IDP 0.576087 0.972973
66 DBG 0.567797 0.948718
67 FE9 0.555556 0.776596
68 2GP 0.555556 0.96
69 G4M 0.547619 0.880952
70 BGO 0.544643 0.924051
71 I2C FE2 CMO CMO 0.538462 0.808989
72 ATP 0.537634 0.92
73 G1G 0.533898 0.925
74 AQP 0.531915 0.92
75 5FA 0.531915 0.92
76 G A A A 0.525862 0.923077
77 U A G G 0.521368 0.935065
78 01G 0.518868 0.902439
79 ITT 0.510638 0.868421
80 P2G 0.510638 0.883117
81 GGM 0.504274 0.901235
82 G1R G1R 0.504065 0.924051
83 DGP 0.5 0.910256
84 PGD O 0.5 0.850575
85 MGO 0.5 0.864198
86 P1G 0.5 0.871795
87 DG 0.5 0.910256
88 GTA 0.495495 0.936709
89 B4P 0.489362 0.894737
90 AP5 0.489362 0.894737
91 IMP 0.489362 0.959459
92 7DT 0.484536 0.906667
93 G G U 0.482143 0.935065
94 GPC 0.479339 0.879518
95 G C 0.478992 0.9
96 BA3 0.478723 0.894737
97 ADP 0.473684 0.92
98 G2Q 0.471698 0.961039
99 G7M 0.46875 0.948052
100 25L 0.458716 0.907895
101 A2D 0.457447 0.894737
102 RGT 0.45045 0.909091
103 AGS 0.45 0.873418
104 SAP 0.45 0.873418
105 SGP 0.44898 0.82716
106 U G A 0.448529 0.888889
107 A4P 0.445378 0.869048
108 G G G RPC 0.442623 0.875
109 ACQ 0.441176 0.896104
110 ANP 0.441176 0.896104
111 8GT 0.441176 0.875
112 APC G U 0.44 0.886076
113 G U34 0.438017 0.888889
114 6AD 0.436893 0.841463
115 G G G C 0.433071 0.9125
116 UP5 0.432203 0.873418
117 35G 0.431373 0.933333
118 C2E 0.431373 0.921053
119 PCG 0.431373 0.933333
120 A G C C 0.429688 0.911392
121 5GP 5GP 0.427184 0.883117
122 TAT 0.427184 0.884615
123 APR 0.425743 0.894737
124 AR6 0.425743 0.894737
125 AN2 0.424242 0.907895
126 7DD 0.424242 0.906667
127 DG DG 0.423423 0.865854
128 AD9 0.421569 0.896104
129 M33 0.42 0.883117
130 7D4 0.42 0.835443
131 UCG 0.419847 0.911392
132 H6Y 0.419048 0.946667
133 G C C C 0.416667 0.924051
134 ACP 0.415842 0.896104
135 T5A 0.414634 0.802326
136 MGQ 0.412844 0.935897
137 ADQ 0.412844 0.871795
138 A1R 0.412844 0.839506
139 MGT 0.411215 0.823529
140 A G U 0.410072 0.888889
141 93A 0.41 0.833333
142 A22 0.407407 0.907895
143 CA0 0.405941 0.896104
144 ATF 0.40566 0.884615
145 AGO 0.404762 0.888889
146 MGV 0.401786 0.890244
147 CGP 0.4 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3RYC; Ligand: GTP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3ryc.bio1) has 29 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3RYC; Ligand: GTP; Similar sites found: 119
This union binding pocket(no: 2) in the query (biounit: 3ryc.bio1) has 32 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1A27 EST 0.02029 0.40213 3.4965
2 1RTW MP5 0.04289 0.40339 4.09091
3 1BZL FAD 0.01835 0.40973 4.1958
4 2PUL ACP 0.01825 0.40432 4.1958
5 1XXR MAN 0.01161 0.43004 4.34783
6 5TE1 7A2 0.01186 0.42889 4.8951
7 4M2K PLP 0.02724 0.40999 4.8951
8 2Q8M AMP 0.02078 0.40846 4.8951
9 4YZ5 DAN 0.01973 0.40271 4.8951
10 4S00 AKR 0.03099 0.40807 4.94382
11 2FMD MAN MAN 0.01162 0.43227 5
12 2WME NAP 0.005783 0.42081 5.32151
13 4TV1 36M 0.01577 0.42682 5.39326
14 4TUZ 36J 0.01916 0.41022 5.39326
15 3UUA 0CZ 0.02937 0.40449 5.39326
16 4MGA 27L 0.03112 0.40247 5.39326
17 4MGD 27N 0.02473 0.40126 5.39326
18 2VNO GAL GAL FUC 0.02485 0.41668 5.55556
19 2GZM DGL 0.01237 0.42793 5.59441
20 2OG7 AHB 0.04264 0.4041 5.59441
21 2E2P ADP 0.007682 0.42597 5.68562
22 1NF8 BOG 0.02266 0.41751 5.7971
23 2BES RES 0.0186 0.41087 5.81395
24 2YVF FAD 0.007807 0.40988 5.88235
25 2YVF NAD 0.008107 0.40988 5.88235
26 1M26 GAL A2G 0.0194 0.41335 6.01504
27 5CC2 CKA 0.01409 0.4032 6.03774
28 2OG2 MLI 0.02171 0.42979 6.06742
29 3B9Q MLI 0.03809 0.41309 6.29139
30 1T9D P22 0.02835 0.41313 6.29371
31 2HK9 ATR 0.03009 0.40395 6.29371
32 4CIB 7UZ 0.04658 0.40158 6.29371
33 2YVJ NAI 0.006914 0.41728 6.42202
34 4ZGM 32M 0.04177 0.40246 6.55738
35 3N8K D1X 0.01252 0.42341 6.65188
36 1W5F G2P 0.00000003226 0.61536 6.79887
37 5CXI 5TW 0.01258 0.41202 6.89655
38 2I74 MAN MAN MAN MAN 0.01993 0.42302 6.99301
39 1W62 PYC 0.03075 0.41123 6.99301
40 1WPQ 13P 0.04505 0.40048 6.99301
41 4XCP PLM 0.0414 0.40314 7.05882
42 1UNQ 4IP 0.02377 0.41841 7.2
43 1RQ2 CIT 0.00000004363 0.63023 7.69231
44 2RHO GSP 0.00000006548 0.54051 7.69231
45 2RHO GDP 0.000005204 0.42848 7.69231
46 1QVJ RP5 0.03078 0.4109 7.69231
47 1TUU AMP 0.02747 0.40979 7.69231
48 4DNJ ANN 0.03448 0.40341 7.69231
49 4MG8 27J 0.02427 0.40165 7.86517
50 1VBO MAN 0.003264 0.46155 8.05369
51 1VBO MAN MAN MAN 0.00657 0.44548 8.05369
52 1WQ1 AF3 0.008232 0.44342 8.39161
53 2J5V PCA 0.03591 0.42132 8.39161
54 2J5V RGP 0.04013 0.40602 8.39161
55 1IXI 2HP 0.04161 0.40421 9.09091
56 2HJR CIT 0.0353 0.40406 9.09091
57 1QD0 RR6 0.01756 0.41211 9.375
58 4D86 ADP 0.006824 0.41425 9.53437
59 4Q6R SIN 0.01577 0.41892 9.79021
60 3F8D FAD 0.009894 0.41124 9.79021
61 1MO9 KPC 0.01718 0.40543 9.79021
62 1MO9 FAD 0.01677 0.40537 9.79021
63 3KOX Z98 0.01455 0.40901 9.91736
64 5HUA FK5 0.013 0.4268 10.4348
65 3MMH SME 0.0123 0.42381 10.4895
66 2CJP VPR 0.02703 0.41625 10.4895
67 4OUE IPT 0.0422 0.40986 10.4895
68 1QMG APX 0.006163 0.40705 10.4895
69 2GBB CIT 0.03835 0.40215 10.4895
70 5LJW ANP 0.03512 0.4005 10.4895
71 2GND MAN 0.006691 0.44532 11.1111
72 2PHX MAN MAN 0.006995 0.44454 11.1111
73 2GN3 MMA 0.02671 0.4321 11.1111
74 2GN3 MAN 0.02732 0.42911 11.1111
75 2PHW MAN MAN MAN BMA MAN MAN MAN 0.01512 0.41925 11.1111
76 1Q8P MAN MMA 0.02668 0.41455 11.1111
77 2PHR MAN MAN BMA MAN 0.02488 0.41205 11.1111
78 2GMP NAG MAN 0.0308 0.41064 11.1111
79 2PHF MAN MAN BMA MAN 0.02856 0.40891 11.1111
80 2PHT MAN MAN MAN BMA MAN 0.02578 0.4074 11.1111
81 2PHR MAN MAN 0.0389 0.4057 11.1111
82 2PHU MAN MAN MAN BMA MAN 0.02873 0.40498 11.1111
83 1R6N 434 0.03023 0.4101 11.3744
84 1XX6 ADP 0.04409 0.40485 11.5183
85 1FHX 4IP 0.03493 0.40824 11.6279
86 3G4Q MCH 0.02004 0.40925 11.6438
87 3TDC 0EU 0.008361 0.44694 11.8881
88 2RI1 GLP 0.03541 0.40918 11.8881
89 4DXD GDP 0.000000005269 0.64721 11.9101
90 5XDT GDP 0.00000002456 0.61374 11.9101
91 5XDT MB3 0.00000003444 0.56821 11.9101
92 3IB1 IMN 0.03382 0.40899 12.4638
93 2ZGY GDP 0.009173 0.4117 12.5874
94 4KJU 1RH 0.0256 0.41441 12.7907
95 4LAY I63 0.02534 0.41576 13.2867
96 3N9R TD3 0.03458 0.40085 13.2867
97 1LOB MMA 0.02947 0.40819 13.4615
98 3CM2 X23 0.0153 0.42754 13.8462
99 5X2N ALA 0.01401 0.43609 13.986
100 3VGL ANP 0.01729 0.40544 14.3302
101 1ECM TSA 0.01425 0.42473 14.6789
102 4EI7 GDP 0.000000002744 0.67366 14.6853
103 2QCX PF1 0.00957 0.44005 14.6853
104 2R75 01G 0.0000000009448 0.66288 14.7929
105 5N6Y HCA 0.04089 0.40173 15.0442
106 2VAP GDP 0.000000001118 0.65317 15.1099
107 1OFU GDP 0.0000004351 0.60075 15.3125
108 1IZC PYR 0.04944 0.40184 15.3846
109 1FM9 9CR 0.004121 0.42401 16.0839
110 5BWD FUM 0.03526 0.41026 16.6667
111 4PJ3 ANP 0.02059 0.40182 16.7832
112 3ITJ CIT 0.01066 0.41086 18.1818
113 5KOD IAC 0.03247 0.40889 18.8811
114 3QVI K95 0.02682 0.40292 18.8811
115 2Q0L NAP 0.01958 0.40286 20.979
116 3ICT ADP 0.01761 0.41206 21.6783
117 3ICS ADP 0.03064 0.40002 21.6783
118 1JQY A32 0.02334 0.41352 22.3301
119 1LOJ U 0.02195 0.40999 32.1839
Pocket No.: 3; Query (leader) PDB : 3RYC; Ligand: GDP; Similar sites found: 77
This union binding pocket(no: 3) in the query (biounit: 3ryc.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3NOJ PYR 0.02465 0.41047 2.52101
2 2WPF WPF 0.03986 0.40623 3.32594
3 2WPF FAD 0.04263 0.40442 3.32594
4 3I0O SMI 0.03174 0.4052 3.4965
5 2WT9 NIO 0.0131 0.42307 3.82979
6 1RTW MP5 0.02704 0.40663 4.09091
7 1XXR MAN 0.01149 0.42339 4.34783
8 1E4I NFG 0.007765 0.41344 4.8951
9 1SO0 GAL 0.03601 0.40005 4.94186
10 2WME NAP 0.006777 0.40934 5.32151
11 4MGA 27L 0.01246 0.4192 5.39326
12 3UUA 0CZ 0.0166 0.40929 5.39326
13 3V1S 0LH 0.01399 0.4143 5.59441
14 5L7G LYS SER LEU LEU GLN GLN LEU LEU THR GLU 0.02529 0.40403 5.90164
15 4Q3F TLA 0.007832 0.42138 5.98291
16 1UZ4 IFL 0.02454 0.40869 6.29371
17 4ZGM 32M 0.0299 0.41281 6.55738
18 3N8K D1X 0.02356 0.4017 6.65188
19 1W5F G2P 0.000005343 0.50983 6.79887
20 5CXI 5TW 0.00723 0.41514 6.89655
21 1ZGS XMM 0.01368 0.42686 6.99301
22 5X7Q GLC GLC GLC GLC 0.0182 0.42205 6.99301
23 1W62 PYC 0.02716 0.40652 6.99301
24 2PZI AXX 0.01939 0.40217 6.99301
25 2I74 MAN MAN MAN MAN 0.03726 0.40062 6.99301
26 1RQ2 CIT 0.0000003016 0.58078 7.69231
27 2RHO GSP 0.000004675 0.52074 7.69231
28 2RHO GDP 0.000002342 0.47722 7.69231
29 1TUU AMP 0.01889 0.41052 7.69231
30 1RL4 BL5 0.04516 0.40957 7.69231
31 2DC1 CIT 0.03333 0.40103 7.69231
32 1VBO MAN MAN MAN 0.003423 0.45449 8.05369
33 1VBO MAN 0.002978 0.44925 8.05369
34 2BQP GLC 0.002986 0.45584 8.97436
35 1IXI 2HP 0.0119 0.42762 9.09091
36 5LY1 PPI 0.03387 0.40669 9.09091
37 4D86 ADP 0.006932 0.40561 9.53437
38 3F8D FAD 0.02415 0.4075 9.79021
39 5HUA FK5 0.01826 0.41127 10.4348
40 1Q8Q MAN MMA 0.005376 0.44371 11.1111
41 1Q8S MAN MMA 0.006248 0.44003 11.1111
42 2PHX MAN MAN 0.007036 0.43638 11.1111
43 2GNM MAN 0.00704 0.4288 11.1111
44 1Q8P MAN MMA 0.01123 0.42664 11.1111
45 2PHF MAN MAN BMA MAN 0.0112 0.42211 11.1111
46 2PHT MAN MAN MAN BMA MAN 0.01097 0.41825 11.1111
47 2PHR MAN MAN BMA MAN 0.01365 0.41772 11.1111
48 2PHU MAN MAN 0.01587 0.41575 11.1111
49 1Q8O MAN MMA 0.01843 0.41543 11.1111
50 2PHU MAN MAN MAN BMA MAN 0.01361 0.41359 11.1111
51 2PHR MAN MAN 0.02026 0.41321 11.1111
52 2PHW MAN MAN 0.02158 0.41177 11.1111
53 2PHT MAN MAN MAN 0.0222 0.41144 11.1111
54 2PHF MAN MAN 0.0237 0.40963 11.1111
55 1UKG MMA 0.01999 0.40435 11.1111
56 2GND MAN MMA 0.03005 0.4042 11.1111
57 2PHW MAN MAN MAN BMA MAN MAN MAN 0.02268 0.40254 11.1111
58 2Q8H TF4 0.02662 0.40201 11.1888
59 3HP9 CF1 0.0264 0.40039 11.1888
60 1WHT BZS 0.02715 0.40683 11.7647
61 2RI1 GLP 0.03248 0.40584 11.8881
62 4DXD GDP 0.00000008606 0.57991 11.9101
63 5XDT GDP 0.0000000946 0.5684 11.9101
64 5XDT MB3 0.0000001813 0.51089 11.9101
65 1U08 PLP 0.01297 0.41463 12.1762
66 1WB4 SXX 0.03331 0.40162 12.5874
67 4LAY I63 0.03019 0.4041 13.2867
68 4LAX FK5 0.03591 0.40011 13.2867
69 4EI7 GDP 0.00000001338 0.62962 14.6853
70 2QCX PF1 0.0151 0.42093 14.6853
71 4RL4 PPV 0.04235 0.40472 14.6853
72 2R75 01G 0.00000007793 0.56333 14.7929
73 2VAP GDP 0.000000155 0.54264 15.1099
74 1OFU GDP 0.0000001289 0.61025 15.3125
75 4GN8 ASO 0.02318 0.40596 16.7832
76 3ITJ CIT 0.02008 0.40275 18.1818
77 1JQY A32 0.009939 0.42941 22.3301
Pocket No.: 4; Query (leader) PDB : 3RYC; Ligand: GTP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3ryc.bio1) has 29 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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