Receptor
PDB id Resolution Class Description Source Keywords
3T1O 1.9 Å EC: 3.6.5.2 MGLA BOUND TO GDP THERMUS THERMOPHILUS G DOMAIN CONTAINING PROTEIN BACTERIAL GTPASE BACTERIAL POLMOTILITY POLE LOCALISATION ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL ANALYSIS OF THE RAS-LIKE G PROTEIN MGLA COGNATE GAP MGLB AND IMPLICATIONS FOR BACTERIAL POL EMBO J. V. 30 4185 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:274;
B:274;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:197;
A:198;
A:199;
A:200;
B:197;
B:198;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
MPD A:5276;
Invalid;
none;
submit data
118.174 C6 H14 O2 C[C@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3T1O 1.9 Å EC: 3.6.5.2 MGLA BOUND TO GDP THERMUS THERMOPHILUS G DOMAIN CONTAINING PROTEIN BACTERIAL GTPASE BACTERIAL POLMOTILITY POLE LOCALISATION ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL ANALYSIS OF THE RAS-LIKE G PROTEIN MGLA COGNATE GAP MGLB AND IMPLICATIONS FOR BACTERIAL POL EMBO J. V. 30 4185 2011
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3T1O; Ligand: GDP; Similar sites found: 516
This union binding pocket(no: 1) in the query (biounit: 3t1o.bio2) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5HCN GCP 0.0000006633 0.5945 None
2 1Z2A GDP 0.000000005982 0.58078 None
3 2ZEJ GDP 0.00000002976 0.53164 None
4 4MKF AP5 0.0006302 0.48882 None
5 1CR1 TTP 0.000299 0.47619 None
6 1BO4 COA 0.006044 0.41621 None
7 2A5J GDP 0.00000005111 0.63612 1.04712
8 1Z0F GDP 0.00000001965 0.66498 1.11732
9 1Z0A GDP 0.00000002108 0.65343 1.14943
10 3FKQ ATP 0.00002958 0.48985 1.51515
11 4ZG4 VO4 ADP 0.0004939 0.4702 2.0202
12 4JLV ADP 0.000144 0.45484 2.0202
13 4TTQ ATP 0.0000385 0.5201 2.52525
14 4ZNL BEF ADP 0.00006825 0.48595 2.52525
15 5HR5 ADP 0.0004019 0.46576 2.52525
16 3FVQ ATP 0.0004068 0.42308 2.52525
17 4GBM A3P 0.0008444 0.401 2.52525
18 1A4R GNH 0.000002621 0.53561 2.6178
19 1A4R GDP 0.000002487 0.52546 2.6178
20 5KSP GDP 0.000001625 0.57656 2.63158
21 2RCN GDP 0.000000002306 0.71978 3.0303
22 1M7G AV2 0.000001141 0.60165 3.0303
23 4YDS ATP 0.00006677 0.52345 3.0303
24 2OFW ADX 0.0003515 0.49896 3.0303
25 2C04 GCP 0.00002178 0.49648 3.0303
26 3UIE ANP 0.0001417 0.48117 3.0303
27 3P4X ADP 0.00007491 0.46971 3.0303
28 3EWA ANP 0.0001331 0.46372 3.0303
29 4IEE AGS 0.001633 0.44848 3.0303
30 2JLR ANP 0.001397 0.42707 3.0303
31 1M7G ADP 0.00006423 0.40373 3.0303
32 2J5V PCA 0.0337 0.40266 3.0303
33 1M7G ADX 0.00003188 0.40139 3.0303
34 4KVA GTP 0.000002397 0.40069 3.0303
35 1PUJ GNP 0.000000000259 0.71648 3.53535
36 1G7C 5GP 0.00000002172 0.67372 3.53535
37 1JJ7 ADP 0.000001103 0.63663 3.53535
38 4KFU ACP 0.00000482 0.58708 3.53535
39 2PZE ATP 0.000007662 0.5863 3.53535
40 3BFV ADP 0.000006097 0.55795 3.53535
41 4WZ6 ATP 0.00001976 0.55749 3.53535
42 1V8K ANP 0.00002756 0.52697 3.53535
43 4Q1A 2XZ 0.001154 0.52695 3.53535
44 4Q1A UDP 0.001154 0.52695 3.53535
45 5KSZ GCP 0.00001562 0.52427 3.53535
46 1R0X ATP 0.00004516 0.52412 3.53535
47 4RZ3 ADP 0.00003264 0.5155 3.53535
48 1XP8 AGS 0.0001251 0.50265 3.53535
49 1SQ5 ADP 0.00007554 0.49967 3.53535
50 2QZ4 ADP 0.00005792 0.49865 3.53535
51 1R6B ADP 0.0001416 0.48709 3.53535
52 2XTN GTP 0.00001185 0.47451 3.53535
53 1G41 ADP 0.0002584 0.46942 3.53535
54 2OZE AGS 0.0002223 0.44671 3.53535
55 5WRI A3P 0.002663 0.43422 3.53535
56 2IXE ATP 0.0001586 0.4293 3.53535
57 2B8W ALF 5GP 0.0003043 0.41135 3.53535
58 1J99 AND 0.02055 0.40634 3.53535
59 3BFX A3P 0.002375 0.4045 3.53535
60 1AQU A3P 0.004053 0.40093 3.53535
61 3Q85 GNP 0.00000000183 0.72452 3.5503
62 1HTW ADP 0.00002501 0.50585 3.79747
63 3KTA AP5 0.000382 0.4509 3.84615
64 4BQS ADP 0.00003203 0.52388 3.97727
65 4BQS K2Q 0.0005873 0.48415 3.97727
66 2VVG ADP 0.000001888 0.61748 4.0404
67 3COB ADP 0.000003132 0.60008 4.0404
68 4FRZ ADP 0.00001217 0.56666 4.0404
69 1F9V ADP 0.00002076 0.55445 4.0404
70 4V03 ADP 0.000004645 0.54797 4.0404
71 3DC4 ADP 0.00004203 0.53348 4.0404
72 3BOS CDP 0.00002107 0.53248 4.0404
73 4D81 ADP 0.00006284 0.49986 4.0404
74 2CE7 ADP 0.00007026 0.49487 4.0404
75 2GDJ ANP 0.0001651 0.4902 4.0404
76 2Q2Y ADP 0.000688 0.48576 4.0404
77 2Q2Y MKR 0.0006954 0.48434 4.0404
78 3ZQ6 ADP ALF 0.000001984 0.46548 4.0404
79 3DZD ADP 0.0004167 0.45147 4.0404
80 2XAU ADP 0.002091 0.42853 4.0404
81 1YVD GNP 0.0000004562 0.50561 4.14201
82 1DS6 GDP 0.0000002961 0.62007 4.16667
83 1I4D GDP 0.0000005827 0.61582 4.16667
84 4CVN ADP 0.00003315 0.53862 4.18848
85 4ITR GDP 0.000001317 0.53619 4.18848
86 1XX6 ADP 0.0003185 0.47671 4.18848
87 1MH1 GNP 0.0000007853 0.6082 4.30108
88 4PPF FLC 0.000002932 0.60187 4.54545
89 2XT3 ADP 0.000003976 0.59586 4.54545
90 1HE1 GDP 0.000001964 0.52037 4.54545
91 2ZR9 DTP 0.00008305 0.50432 4.54545
92 1E96 GTP 0.000002597 0.48207 4.54545
93 1XKV ATP 0.0001484 0.48026 4.54545
94 5I0H ADP BEF 0.0002865 0.47705 4.54545
95 5X40 ACP 0.0006156 0.46573 4.54545
96 2FNA ADP 0.00004043 0.45306 4.54545
97 1Z6T ADP 0.0003019 0.44587 4.54545
98 4IDN GNP 0.0003617 0.41956 4.54545
99 1HE1 AF3 0.01179 0.41127 4.54545
100 1K6M AGS 0.0006363 0.40406 4.54545
101 1G3Q ADP 0.000001323 0.58067 4.64135
102 3IIJ ADP 0.00001968 0.53388 5
103 4LC1 GDP 0.00000003039 0.66682 5.05051
104 3LRE ADP 0.000005602 0.58907 5.05051
105 1YQT ADP 0.00002919 0.54762 5.05051
106 3KJI ADP 0.00003838 0.50956 5.05051
107 2KIN ADP 0.0000006913 0.48386 5.05051
108 2DPY ADP 0.0005578 0.47747 5.05051
109 4QOS ADP 0.0002038 0.47406 5.05051
110 1W5T ADP 0.001102 0.42363 5.05051
111 1W5T ANP 0.0006174 0.41886 5.05051
112 4P32 ADP 0.0007989 0.40453 5.05051
113 5MEX PAP 0.009769 0.40437 5.05051
114 5MEX SZZ 0.02743 0.40437 5.05051
115 1OFH ADP 0.0001772 0.47679 5.17241
116 1EK0 GNP 0.0000002339 0.50906 5.29412
117 1Y63 ADP 0.000004322 0.56501 5.43478
118 3WYA GDP 0.00000000001474 0.82354 5.55556
119 4P3Y GDP 0.0000000000638 0.80805 5.55556
120 3U6B GDP 0.00000000006647 0.80718 5.55556
121 3WY9 GDP 0.0000000001504 0.78997 5.55556
122 4G5G GDP 0.0000000001822 0.7719 5.55556
123 3U6K GDP 0.0000000002894 0.7624 5.55556
124 1D8T GDP 0.0000000003181 0.76046 5.55556
125 3TK1 GDP 0.000000005121 0.72868 5.55556
126 4RD0 GDP 0.000000001607 0.72294 5.55556
127 5GOE GDP 0.0000000008984 0.71511 5.55556
128 5JBQ GDP 0.0000000001516 0.71505 5.55556
129 2BVN GNP 0.0000000008683 0.69544 5.55556
130 1TQ4 GDP 0.00000007671 0.57077 5.55556
131 3FWY ADP 0.00000306 0.5296 5.55556
132 5MVR ADP 0.00001289 0.5073 5.55556
133 5L3W GDP 0.00004864 0.50206 5.55556
134 4FCW ADP 0.00007508 0.4998 5.55556
135 5IFS ADP 0.00006803 0.49551 5.55556
136 2Y65 ADP 0.000001369 0.49255 5.55556
137 5FTB ANP 0.00008862 0.49033 5.55556
138 5G41 AP5 0.0008095 0.48776 5.55556
139 2FAH GDP 0.00007599 0.48287 5.55556
140 4LJ9 ACP 0.0003227 0.47644 5.55556
141 2QEN ADP 0.00006718 0.47333 5.55556
142 2VF7 ADP 0.0003551 0.46867 5.55556
143 1VHT BA3 0.0005387 0.45505 5.55556
144 5GJC ATP 0.0002775 0.45017 5.55556
145 4R2I ANP 0.002018 0.44961 5.55556
146 1YTM ATP 0.0001233 0.44663 5.55556
147 3B7G ANP 0.001211 0.44409 5.55556
148 5FHD ADP ALF 0.000138 0.44069 5.55556
149 5XDR ADP 0.001916 0.4349 5.55556
150 5E5U MLI 0.00331 0.42883 5.55556
151 3V0H I3P 0.01027 0.41427 5.55556
152 2W2X GSP 0.000001157 0.52742 5.64516
153 3A4M ADP 0.000009382 0.56596 5.76923
154 2ZTS ADP 0.0004057 0.43087 5.9761
155 4J0Q GDP 0.0000000000173 0.83556 6.06061
156 3MD0 GDP 0.000000000392 0.76978 6.06061
157 3AB3 GDP 0.0000000001684 0.76469 6.06061
158 4PC3 GDP 0.00000000666 0.65714 6.06061
159 1T5C ADP 0.0000009937 0.63381 6.06061
160 1ZCB GDP 0.00000000004372 0.62248 6.06061
161 5KUT GDP 0.0000002193 0.59633 6.06061
162 2WMO GTP 0.000000571 0.58895 6.06061
163 1TAD GDP 0.00000000004547 0.58651 6.06061
164 1TAD ALF 0.00000000004547 0.58651 6.06061
165 3CX8 GSP 0.00000000007464 0.57962 6.06061
166 2NCD ADP 0.00001404 0.56335 6.06061
167 3NHB ADP 0.00002328 0.55309 6.06061
168 2ZFI ADP 0.00006313 0.50995 6.06061
169 2PL3 ADP 0.0005132 0.47289 6.06061
170 1U0J ADP 0.0005206 0.47259 6.06061
171 5MZN ADP 0.000813 0.46931 6.06061
172 2GK6 ADP 0.002868 0.44198 6.06061
173 4PX9 ADP 0.0004827 0.43676 6.06061
174 3RC3 ANP 0.004671 0.4263 6.06061
175 4RGQ 13P 0.02872 0.40435 6.06061
176 4DID GDP 0.0000003801 0.60566 6.21762
177 4DKX GDP 0.000000001535 0.72814 6.56566
178 4DCT GDP 0.00000001654 0.66843 6.56566
179 1BG2 ADP 0.0000002926 0.66438 6.56566
180 1GOJ ADP 0.000001414 0.62368 6.56566
181 2W58 ADP 0.000007094 0.59209 6.56566
182 1WDT GTP 0.00000005998 0.58415 6.56566
183 3B5J 12D 0.00003367 0.53828 6.56566
184 4LYA ATP 0.0001025 0.49356 6.56566
185 1NJF AGS 0.0002288 0.48372 6.56566
186 1NJF ADP 0.0003474 0.47097 6.56566
187 1OYY AGS 0.0008287 0.45707 6.56566
188 1I0B PEL 0.006937 0.40852 6.56566
189 3A1S GDP 0.000002446 0.56837 6.58915
190 4WOP CTP 0.001728 0.42398 6.66667
191 3SBD GNP 0.000003659 0.47565 6.95187
192 1LVG ADP 0.0000006366 0.62423 7.07071
193 1G6H ADP 0.000002297 0.61714 7.07071
194 3ZFD ANP 0.00007133 0.49458 7.07071
195 1H65 GDP 0.00001023 0.48236 7.07071
196 5M7P ADP 0.0003844 0.46895 7.07071
197 2ZPA ADP 0.0009131 0.4517 7.07071
198 1FNN ADP 0.0004197 0.43348 7.07071
199 2FSH ANP 0.003685 0.4313 7.07071
200 1NY5 ADP 0.0008257 0.42852 7.07071
201 2D7D ADP 0.003428 0.42788 7.07071
202 1TL2 NDG 0.01486 0.40623 7.07071
203 3GJX GTP 0.00000007654 0.65607 7.57576
204 3ZIA ATP 0.00003339 0.51602 7.57576
205 1XMV ADP 0.00004886 0.5084 7.57576
206 2WKQ GTP 0.000002107 0.50019 7.57576
207 3ZIA ADP 0.00005606 0.48719 7.57576
208 3DKP ADP 0.000319 0.47668 7.57576
209 4XFR CIT 0.01745 0.40403 7.57576
210 1UJ2 C5P 0.0001602 0.40096 7.57576
211 4YSX FAD 0.009366 0.4325 7.97872
212 2CBZ ATP 0.000000949 0.64761 8.01688
213 1D2E GDP 0.0000000006478 0.70023 8.08081
214 5M04 GDP 0.0000000006014 0.67259 8.08081
215 5FG3 GDP 0.0000000007672 0.67107 8.08081
216 2AWN ADP 0.000002949 0.6093 8.08081
217 4WZA ACP 0.00006482 0.55617 8.08081
218 4WZA ADP 0.00006482 0.55617 8.08081
219 4XTR ATP 0.00001032 0.54859 8.08081
220 4XVU ATP 0.00001222 0.54516 8.08081
221 4XTR ADP 0.000008572 0.54476 8.08081
222 1FP6 ADP 0.00001386 0.51423 8.08081
223 5LB3 ADP 0.0004126 0.47749 8.08081
224 3ZS9 ADP ALF 0.00001025 0.44296 8.08081
225 2WOJ ADP ALF 0.00001235 0.44083 8.08081
226 3H4S ADP 0.00000337 0.47813 8.14815
227 1ZC3 GNP 0.000000017 0.5381 8.57143
228 1UAD GNP 0.00000007419 0.52744 8.57143
229 1KO8 6PG 0.0004898 0.43235 8.57143
230 1WF3 GNP 0.00000004226 0.52122 8.58586
231 1OXV ANP 0.00005897 0.5185 8.58586
232 5IRN ADP 0.0000416 0.50798 8.58586
233 1IHU AF3 0.000006229 0.48524 8.58586
234 1IHU ADP 0.000007081 0.47457 8.58586
235 1B7T ADP 0.0005803 0.4536 8.58586
236 2C9O ADP 0.00008961 0.44928 8.58586
237 1KK8 BEF ADP 0.000461 0.43944 8.58586
238 4A4Z ANP 0.002157 0.43741 8.58586
239 1L2T ATP 0.0002248 0.41007 8.58586
240 1NF3 GNP 0.000001624 0.48558 8.59375
241 4QM7 GTP 0.0002065 0.48561 8.77193
242 3T5G GDP 0.00000003846 0.64168 8.83978
243 1U8Z GDP 0.000000006286 0.58267 8.92857
244 5BQ5 ADP BEF 0.0002219 0.47239 8.99471
245 1XTQ GDP 0.00000006663 0.54908 9.03955
246 3CNL GNP 0.0000000004632 0.76626 9.09091
247 4P4T GDP 0.000000109 0.57688 9.09091
248 5L3S GNP 0.000008228 0.55551 9.09091
249 5L3V GDP 0.000004922 0.54684 9.09091
250 5I34 GDP 0.000005611 0.53479 9.09091
251 2CHG ANP 0.00008328 0.46931 9.09091
252 4XGU ADP 0.0001837 0.45804 9.09091
253 4WEI GLC GAL 0.01189 0.41851 9.09091
254 1P9B GDP 0.00002621 0.49358 9.27602
255 5N69 ADP 0.000178 0.46554 9.54774
256 1G4U GDP 0.0000008878 0.54215 9.59596
257 4E03 ADP 0.00002759 0.51984 9.59596
258 5J1J ANP 0.000003062 0.4847 9.59596
259 2OBM ADP 0.000765 0.47795 9.59596
260 4KBF AMP 0.005872 0.42146 9.59596
261 1D2N ANP 0.001218 0.40738 9.59596
262 4YS0 ADP 0.003887 0.4035 9.59596
263 2X7I CIT 0.01264 0.401 9.59596
264 5H56 TYD 0.000136 0.50748 9.74359
265 5H56 ADP 0.000136 0.50748 9.74359
266 1MKY GDP 0.00000000004349 0.80132 10.101
267 3EC1 GDP 0.00000002296 0.66187 10.101
268 5CK5 GDP 0.00000004231 0.60274 10.101
269 2XTZ GSP 0.0000000004166 0.59253 10.101
270 1JJV ATP 0.00002148 0.55294 10.101
271 3T34 GDP 0.0000001436 0.53474 10.101
272 2D2F ADP 0.0001705 0.52559 10.101
273 4R43 GDP 0.000105 0.49951 10.101
274 2WJG GDP 0.00000000002349 0.81397 10.1064
275 1YRB GDP 0.00000002661 0.63193 10.6061
276 4YC7 GNP 0.000000734 0.59948 10.6061
277 4TMZ GSP 0.00000002735 0.56054 10.6061
278 4NCN GTP 0.00000003566 0.55747 10.6061
279 4IHQ ADP 0.00003599 0.52891 10.6061
280 2HF9 GSP 0.0000000102 0.62951 11.1111
281 4AG5 ADP 0.0001018 0.51915 11.1111
282 3TBK ANP 0.001508 0.45592 11.1111
283 2BEK ATP 0.0001275 0.43927 11.1111
284 3IUY AMP 0.0104 0.40094 11.1111
285 2WJH GDP 0.0000000006371 0.70591 11.4458
286 2WJH FLC 0.0000002499 0.6051 11.4458
287 4R98 GNH 0.00000000009463 0.72622 11.6162
288 1JI0 ATP 0.00006085 0.52546 11.6162
289 3IO3 ADP 0.000006932 0.50232 11.6162
290 5TSH ANP 0.00002813 0.49321 11.6162
291 1QF5 RPL 0.004287 0.48365 11.6162
292 3VX3 ADP 0.00004428 0.47417 11.6162
293 1G6O ADP 0.0002407 0.47081 11.6162
294 5TSH ADP 0.00008043 0.44794 11.6162
295 4PJ3 ANP 0.00138 0.42909 11.6162
296 3RLF ANP 0.0002655 0.41434 11.6162
297 4QRH 0O2 0.01187 0.40046 11.6162
298 1W7J ADP BEF 0.000408 0.44135 11.9205
299 4H1V GNP 0.0000003124 0.57385 12.1212
300 2IYL GDP 0.000006011 0.55824 12.1212
301 3EZ2 ADP 0.0000471 0.52324 12.1212
302 2WHX ADP 0.00009918 0.5211 12.1212
303 5VGR GDP 0.0003154 0.44647 12.1212
304 4OI4 ATP 0.0005544 0.40428 12.1212
305 2WIC GNP 0.000000000009115 0.81871 12.6263
306 4PFO ADP 0.000518 0.47296 12.6263
307 2VB6 ADP BEF 0.000479 0.47082 12.6263
308 4D0G GTP 0.00000008688 0.6425 13.0435
309 1GXU 2HP 0.001297 0.44376 13.1868
310 4ZKD GDP 0.00000001173 0.69463 13.6364
311 3E70 GDP 0.00000739 0.54623 13.6364
312 1IN4 ADP 0.0002115 0.4435 13.6364
313 1SVI GDP 0.0000001544 0.64382 13.8462
314 4HSE ADP 0.0001545 0.48534 14.1414
315 3B9Q MLI 0.00001534 0.56776 14.6465
316 4YMU ATP 0.00006722 0.51574 14.6465
317 2OG2 MLI 0.0001753 0.50908 14.6465
318 2GJ8 ALF GDP 0.000000022 0.53235 15.1163
319 3W5J GDP 0.00000001375 0.72606 15.1515
320 4LPS GDP 0.00000001042 0.67769 15.1515
321 2C77 GNP 0.0000000002119 0.6593 15.1515
322 2C78 GNP 0.000000000719 0.62558 15.1515
323 4U00 ADP 0.000004587 0.45799 15.1515
324 5L3R GCP 0.000004832 0.47453 15.3584
325 1GOT GDP 0.00000000002249 0.67961 15.6566
326 2FJU GSP 0.000001828 0.52177 15.6566
327 1SKQ GDP 0.000000000004157 0.86561 16.1616
328 1KK1 GNP 0.00000000001658 0.83645 16.1616
329 1X1R GDP 0.0000001552 0.50905 16.2921
330 1G7S GDP 0.0000000009709 0.72521 17.1717
331 3VMF GTP 0.00000001251 0.69054 17.1717
332 2IS6 ADP 0.00009884 0.50074 17.1717
333 5LTJ ADP 0.0004136 0.45238 17.1717
334 2ODE ALF GDP 0.00000000003626 0.81973 17.6768
335 4B47 GDP 0.0000000002087 0.78307 17.6768
336 5KDO GDP 0.000000000008765 0.71164 17.6768
337 2OM2 GDP 0.00000000002044 0.69942 17.6768
338 1GP2 GDP 0.00000000002916 0.65928 17.6768
339 1FQJ GDP 0.00000000002975 0.65869 17.6768
340 1FQK GDP 0.00000000003224 0.65823 17.6768
341 1Y3A GDP 0.00000000003492 0.65704 17.6768
342 1BH2 GSP 0.00000000004934 0.58478 17.6768
343 1SVK ALF GDP 0.00000000003579 0.57723 17.6768
344 2FH5 GTP 0.00000005103 0.57686 17.6768
345 5IRR GSP 0.000001249 0.5131 17.6768
346 1FQJ ALF 0.007962 0.42422 17.6768
347 1FQK ALF 0.009152 0.42101 17.6768
348 2X77 GDP 0.0000001034 0.63173 17.9894
349 1ION ADP 0.000005126 0.54605 18.1818
350 1AZT GSP 0.00000000004606 0.58484 19.1919
351 1CS4 GSP 0.0000000001535 0.57968 19.1919
352 1W0J ADP 0.00003786 0.50983 19.1919
353 2V7Q ATP 0.00003651 0.50767 19.1919
354 3Q9L ATP 0.00003669 0.48457 19.1919
355 2V7Q ADP 0.0002501 0.48168 19.1919
356 1W0J ADP BEF 0.0005233 0.4628 19.1919
357 2CK3 ANP 0.000682 0.42436 19.1919
358 4NON GDP 0.00000002151 0.52306 19.697
359 3QF7 ANP 0.0008493 0.41932 20
360 1GWN GTP 0.000001245 0.58609 20.202
361 5K5Z ANP 0.00009485 0.50571 20.202
362 4GOX A3P 0.0002347 0.42074 20.202
363 5WDR GNP 0.00000009643 0.65132 20.4678
364 5XCO GDP 0.0000001605 0.61737 20.4678
365 3REF GDP 0.0000008302 0.52086 20.6186
366 4HI0 GDP 0.0000000009913 0.63738 20.7071
367 4KVG GTP 0.0000004648 0.50109 20.8333
368 3X1Z GNP 0.000000114 0.65033 20.9581
369 1GUA GNP 0.0000001564 0.50786 20.9581
370 4HDQ GNP 0.0000003135 0.49947 20.9581
371 1B0U ATP 0.0008846 0.4358 21.2121
372 1ZD9 GDP 0.00000001073 0.6136 21.2766
373 1RRC ADP 0.00001393 0.45622 21.7172
374 1M7B GTP 0.000000972 0.52981 22.2826
375 3QBT GNP 0.0000002227 0.51321 22.4138
376 4LHW GNP 0.0000006686 0.49928 22.4138
377 3TNF GNP 0.0000003062 0.49023 22.4138
378 3WXM GTP 0.00000003016 0.67254 22.7273
379 5UFQ GNP 0.0000001821 0.63573 22.8916
380 3M1I GTP 0.00000003544 0.67189 23.2323
381 3WYF GTP 0.00000003709 0.51858 23.2323
382 5O2T GSP 0.0000002566 0.5001 23.7374
383 5J1S ATP 0.0003049 0.41022 23.7374
384 1DAR GDP 0.0000000004449 0.75357 24.2424
385 2HCJ GDP 0.0000000001016 0.70511 24.3243
386 1M2O GNP 0.0000001121 0.51979 24.7368
387 2NGR GDP 0.0000002944 0.61077 24.7475
388 2J0V GDP 0.0000007057 0.57519 24.7475
389 1GRN GDP 0.000001 0.55254 24.7475
390 2NGR AF3 0.01209 0.41072 24.7475
391 1GRN AF3 0.01425 0.40714 24.7475
392 5UQW GDP 0.0000002102 0.63021 24.8677
393 4DSU GDP 0.0000001177 0.51278 24.8677
394 3NKV GNP 0.0000003425 0.50819 25.1429
395 5TB5 GDP 0.0000000137 0.66186 25.4054
396 5TAR GDP 0.00000001776 0.63949 25.4054
397 3RWO GDP 0.00000003018 0.53719 25.9459
398 5SZH GNP 0.0000002189 0.63447 26.2626
399 4KAX GTP 0.0000000002676 0.64101 26.6272
400 5DI3 GNP 0.000000004056 0.60203 27.027
401 3TKL GTP 0.0000003124 0.5181 27.0408
402 1Z0J GTP 0.0000002941 0.50161 27.1186
403 2A9K GDP 0.00000003728 0.64971 27.2727
404 2W83 GTP 0.0000000003949 0.62041 27.2727
405 3CPJ GDP 0.0000003343 0.58498 27.2727
406 5H67 ATP 0.004411 0.40659 27.5
407 1NVU GTP 0.000000243 0.50541 27.7108
408 2QTV GNP 0.0000001883 0.52363 28.1437
409 3SFV GDP 0.0000002454 0.61864 28.1768
410 3PQC GDP 0.000007505 0.53859 28.2051
411 2J59 GTP 0.0000000004827 0.61776 28.3133
412 1O3Y GTP 0.0000000009992 0.60851 28.3133
413 1J2J GTP 0.000000007263 0.58056 28.3133
414 4K81 GTP 0.0000002046 0.49972 28.655
415 1KMQ GNP 0.0000006278 0.51596 28.8043
416 5E95 GDP 0.00000001936 0.62232 29.1667
417 4U5X GNP 0.000000473 0.55169 29.2135
418 3CH5 GDP 0.000000006543 0.687 29.2929
419 5UWP GNP 0.00000003519 0.67461 29.2929
420 5UWU GNP 0.0000000337 0.67293 29.2929
421 5UWT GNP 0.0000000364 0.67135 29.2929
422 5UWI GNP 0.00000003775 0.6706 29.2929
423 5DI9 GNP 0.0000000441 0.66995 29.2929
424 5UWR GNP 0.0000000436 0.66764 29.2929
425 5BXQ GDP 0.000000008036 0.66003 29.2929
426 5DIF GNP 0.00000003218 0.5293 29.2929
427 5UWJ GNP 0.00000003752 0.52758 29.2929
428 5UWW GNP 0.00000003891 0.52731 29.2929
429 5UWH GNP 0.00000003842 0.52721 29.2929
430 5UWQ GNP 0.00000003856 0.52696 29.2929
431 5DHF GNP 0.0000000403 0.52687 29.2929
432 5UWO GNP 0.00000004559 0.52557 29.2929
433 1IBR GNP 0.00000005234 0.52343 29.2929
434 4HAT GNP 0.00000003405 0.51938 29.2929
435 5UWS GNP 0.00000004234 0.51682 29.2929
436 1LFD GNP 0.0000001093 0.52335 29.3413
437 1G16 GDP 0.000000768 0.52165 29.4118
438 4XOI GTP 0.000001047 0.5975 29.4444
439 4YLG GDP 0.0000000002815 0.74651 29.4798
440 2UZI GTP 0.0000002492 0.62931 29.5181
441 3KUD GDP 0.00000005182 0.57683 29.5181
442 1WQ1 GDP 0.0000001431 0.5391 29.5181
443 1NVV GNP 0.0000002135 0.50529 29.5181
444 1WQ1 AF3 0.01083 0.42091 29.5181
445 1CXZ GSP 0.000001088 0.51786 29.6703
446 1UPT GTP 0.00000003228 0.56797 29.8246
447 3AQ4 GDP 0.000000000012 0.8132 29.8913
448 4XSH GSP 0.000000504 0.55191 30.1676
449 4V0K GDP 0.0000000009797 0.59419 30.1775
450 2CJW GDP 0.0000000007061 0.74408 30.2083
451 1OIX GDP 0.00000007439 0.65406 30.3665
452 1MR3 G3D 0.0000000001872 0.75818 30.3867
453 5EE5 GTP 0.0000000339 0.66147 30.4094
454 1TX4 ALF GDP 0.0000007544 0.51346 30.5085
455 3GJ3 GDP 0.000000004659 0.70533 30.8081
456 3GJ7 GDP 0.0000000066 0.69818 30.8081
457 3GJ0 GDP 0.000000007483 0.6956 30.8081
458 3GJ4 GDP 0.00000001069 0.68827 30.8081
459 3GJ8 GDP 0.000000006465 0.68725 30.8081
460 3GJ5 GDP 0.000000007185 0.68513 30.8081
461 2A5F GTP 0.00000000003726 0.63868 30.8571
462 1OIV GDP 0.00000008061 0.65241 30.8901
463 1NRJ GTP 0.00000007397 0.57169 31.3131
464 1JWY GDP 0.00000001662 0.63997 31.8182
465 1JWY ADP 0.0001848 0.48176 31.8182
466 3WYG GTP 0.00000001563 0.52718 31.8681
467 3PCR GTP 0.000000002315 0.59647 32.0988
468 1OW3 GDP 0.0000003583 0.60488 32.1244
469 1R2Q GNP 0.00000002299 0.47777 32.3529
470 4ZI2 GNP 0.00000000967 0.58958 32.6316
471 1R4A GNP 0.000000002262 0.58659 32.7273
472 2HT6 GDP 0.0000000002165 0.7823 32.7586
473 4GOJ GNP 0.000000005056 0.59883 32.8042
474 1RE0 GDP 0.00000000001294 0.84168 32.9268
475 1S9D GDP 0.00000000001642 0.80692 32.9268
476 1WA5 GTP 0.00000004179 0.49211 32.9545
477 3N5C GDP 0.00000000001351 0.82532 33.3333
478 2QN6 GDP 0.00000000002947 0.82433 33.3333
479 5IRC GDP 0.000002145 0.56308 33.3333
480 5HPY GDP 0.00000031 0.60775 33.5135
481 2G77 GDP 0.00000001119 0.63006 33.8384
482 1FZQ GDP 0.000000001018 0.73658 34.2541
483 2EW1 GNP 0.0000003063 0.61987 34.3434
484 2BCG GDP 0.0000001816 0.56931 34.3434
485 1YZQ GNP 0.00000005488 0.5215 34.7059
486 2D7C GTP 0.00000005134 0.53031 34.7305
487 2FFQ GSP 0.00000003656 0.67126 35.0877
488 1TU3 GNP 0.00000007583 0.52784 35.443
489 1Z06 GNP 0.00000009383 0.53451 35.4497
490 1YZN GNP 0.0000005097 0.49436 35.6757
491 5JCZ GDP 0.0000001769 0.56668 35.7542
492 2HV8 GTP 0.0000001778 0.63622 36.0465
493 4LX0 BEF GDP 0.0000001904 0.63733 36.1582
494 3DOE GTP 0.000000001474 0.60158 36.4583
495 2Y8E GNP 0.00000004888 0.53254 36.8715
496 1Z0K GTP 0.0000001218 0.54311 37.7907
497 1VG0 GDP 0.0000000466 0.6417 37.8788
498 1VG8 GNP 0.00000009895 0.51345 37.8788
499 1Z08 GNP 0.0000000558 0.5518 38.2353
500 5JCP GDP ALF 0.0000001992 0.5796 38.3838
501 3E5H GNP 0.0000002675 0.51449 38.764
502 1D5C GDP 0.00000005417 0.60275 38.8889
503 1KAO GDP 0.00000004046 0.60804 38.9222
504 1KSH GDP 0.000000006951 0.6901 39.2473
505 1KY3 GDP 0.0000002255 0.59174 39.5604
506 1YZG GDP 0.00000000002804 0.7962 39.6648
507 1F6B GDP 0.000000003222 0.70119 39.899
508 2GCO GNP 0.0000002676 0.5751 40.2985
509 2GCN GDP 0.0000004421 0.53164 40.2985
510 1VG1 GDP 0.000000006594 0.68685 40.5405
511 1VG9 GDP 0.00000001715 0.64442 40.5405
512 1ZJ6 G3D 0.00000000002753 0.79657 40.6417
513 3LXR GDP 0.0000004157 0.59515 41.6216
514 1S8F GDP 0.0000000405 0.51602 42.9379
515 3RAB GNP 0.00000009424 0.52582 43.1953
516 2EFE GNH 0.0000003834 0.58257 43.6464
517 5WRJ A3P 0.002581 0.4384 50
Pocket No.: 2; Query (leader) PDB : 3T1O; Ligand: GDP; Similar sites found: 4
This union binding pocket(no: 2) in the query (biounit: 3t1o.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3BER AMP 0.01131 0.40329 3.0303
2 2YVF FAD 0.03557 0.41553 9.09091
3 2YVF NAD 0.03652 0.41553 9.09091
4 4GDX GLU 0.02441 0.40116 11.6162
Feedback