Receptor
PDB id Resolution Class Description Source Keywords
3T34 2.41 Å NON-ENZYME: OTHER ARABIDOPSIS THALIANA DYNAMIN-RELATED PROTEIN 1A (ATDRP1A) IN PREFISSION STATE ARABIDOPSIS THALIANA DYNAMIN-LIKE PROTEIN 1A GTPASE MEMBRANE FISSION MOTOR PRO
Ref.: STRUCTURAL BASIS FOR MECHANOCHEMICAL ROLE OF ARABID THALIANA DYNAMIN-RELATED PROTEIN IN MEMBRANE FISSIO J MOL CELL BIOL V. 3 378 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALF A:1001;
B:1001;
Invalid;
Invalid;
none;
none;
submit data
102.975 Al F4 F[Al-...
GDP A:1000;
B:1000;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:1002;
B:1002;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
NA A:1003;
B:1003;
Part of Protein;
Part of Protein;
none;
none;
submit data
22.99 Na [Na+]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3T34 2.41 Å NON-ENZYME: OTHER ARABIDOPSIS THALIANA DYNAMIN-RELATED PROTEIN 1A (ATDRP1A) IN PREFISSION STATE ARABIDOPSIS THALIANA DYNAMIN-LIKE PROTEIN 1A GTPASE MEMBRANE FISSION MOTOR PRO
Ref.: STRUCTURAL BASIS FOR MECHANOCHEMICAL ROLE OF ARABID THALIANA DYNAMIN-RELATED PROTEIN IN MEMBRANE FISSIO J MOL CELL BIOL V. 3 378 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2X2F - GDP ALF n/a n/a
3 5D3Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3ZYC - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
5 2X2E - GDP ALF n/a n/a
6 4P4T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 4H1V - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4H1U - FLC C6 H5 O7 C(C(=O)[O-....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3T34; Ligand: GDP; Similar sites found: 347
This union binding pocket(no: 1) in the query (biounit: 3t34.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3FWY ADP 0.00004038 0.46258 0.955414
2 2HT6 GDP 0.000001167 0.4787 1.14943
3 1Y3A GDP 0.000003248 0.53314 1.51976
4 4AG5 ADP 0.0001659 0.52221 1.94444
5 1IHU ADP 0.000302 0.45224 1.94444
6 1IHU AF3 0.0002553 0.44953 1.94444
7 1X6V ADP 0.006236 0.40579 1.94444
8 2ZFI ADP 0.001543 0.45691 2.18579
9 1D2N ANP 0.003034 0.40184 2.20588
10 1QF5 GDP 0.00004962 0.52085 2.22222
11 1KK1 GNP 0.0000001612 0.50205 2.22222
12 1QF5 RPL 0.008735 0.44692 2.22222
13 4B1X LAB 0.0169 0.40995 2.22222
14 2FAH GDP 0.001055 0.40719 2.22222
15 1OS1 PYR 0.006302 0.40696 2.22222
16 1OS1 ATP 0.006183 0.40594 2.22222
17 1XMV ADP 0.00004621 0.43944 2.24719
18 3LZW FAD 0.04731 0.40317 2.40964
19 3VX3 ADP 0.0008376 0.42 2.41935
20 1SKQ GDP 0.00000003579 0.51698 2.5
21 1XKV ATP 0.0004314 0.41533 2.5
22 2C9O ADP 0.002099 0.40859 2.5
23 4ZNL BEF ADP 0.0001933 0.41682 2.55474
24 5WRJ A3P 0.004103 0.40733 2.64026
25 4ZG4 VO4 ADP 0.00178 0.42057 2.74869
26 4IEE AGS 0.005868 0.43314 2.77778
27 2J0V GDP 0.00001726 0.46312 2.83019
28 2A5F GTP 0.000002488 0.54034 2.85714
29 2JJK R15 0.00939 0.41466 2.95858
30 3Q72 GNP 0.0000004163 0.49052 3.01205
31 5I0H ADP BEF 0.001559 0.41268 3.05556
32 3HDY FDA 0.02544 0.40663 3.05556
33 3HDY GDU 0.02614 0.40608 3.05556
34 3HDY FAD 0.02614 0.40608 3.05556
35 1FP6 ADP 0.00007966 0.44207 3.11419
36 1DAK DPU 0.008791 0.41316 3.125
37 4GOX A3P 0.002576 0.41396 3.19489
38 2WKQ GTP 0.00006783 0.4789 3.31325
39 1DAR GDP 0.0000002326 0.50439 3.33333
40 1JI0 ATP 0.0008925 0.48031 3.33333
41 3EC1 GDP 0.00002387 0.4514 3.33333
42 1Z6T ADP 0.0007306 0.41429 3.33333
43 1YTM ATP 0.001607 0.41387 3.33333
44 1SVM ATP 0.01085 0.41359 3.33333
45 4OI4 ATP 0.002698 0.41313 3.33333
46 5KDO GDP 0.000002705 0.52298 3.35196
47 2RCN GDP 0.0000007864 0.48932 3.35196
48 2OFW ADX 0.005058 0.42069 3.36538
49 1SVK ALF GDP 0.0000008477 0.5711 3.39943
50 1NJF AGS 0.0005828 0.43655 3.6
51 1NJF ADP 0.0004599 0.43275 3.6
52 1D2E GDP 0.000003923 0.49223 3.61111
53 5FG3 GDP 0.000003012 0.46662 3.61111
54 1E2K TMC 0.01166 0.40577 3.62538
55 2CJW GDP 0.000001485 0.48834 3.64583
56 4QOS ADP 0.0007051 0.40631 3.77358
57 2QQ0 ANP 0.006892 0.4079 3.80435
58 2QQ0 TMP 0.007877 0.40541 3.80435
59 1BH2 GSP 0.000001421 0.55951 3.80952
60 1KY3 GDP 0.00005104 0.45476 3.84615
61 1F5N GNP 0.00003165 0.46978 3.88889
62 4PJ3 ANP 0.00154 0.40063 3.88889
63 2PEZ DAT 0.005079 0.41358 3.91061
64 2PEZ GGZ 0.005079 0.41358 3.91061
65 1F6B GDP 0.000005417 0.47387 4.0404
66 1TDF NAP 0.04104 0.4013 4.11392
67 2WIC GNP 0.00000003125 0.54465 4.11985
68 4NU0 AP5 0.004341 0.4225 4.14747
69 1ZIN AP5 0.006229 0.41777 4.14747
70 4RD0 GDP 0.000004573 0.52023 4.16667
71 4DCT GDP 0.00000471 0.47862 4.16667
72 2IYL GDP 0.00000179 0.47815 4.16667
73 2DPY ADP 0.002053 0.46165 4.16667
74 4PFO ADP 0.0007595 0.43943 4.16667
75 1W0J ADP 0.0006642 0.40954 4.16667
76 4X8O AP5 0.005713 0.42432 4.20561
77 2B8W ALF 5GP 0.00006875 0.48077 4.26829
78 1TAD ALF 0.000001579 0.55758 4.32099
79 1TAD GDP 0.000001579 0.55758 4.32099
80 1VG8 GNP 0.000006164 0.5285 4.34783
81 4B47 GDP 0.000001214 0.47775 4.44444
82 3IIJ ADP 0.0002761 0.40743 4.44444
83 2Y65 ADP 0.00005946 0.40129 4.44444
84 1S8F GDP 0.00004442 0.49458 4.51977
85 5HCN GCP 0.00005114 0.44249 4.5977
86 4U60 SIA GAL NGA 0.01277 0.4166 4.64286
87 4U60 SIA 0.01602 0.41158 4.64286
88 4U60 SIA GAL BGC NGA GAL 0.02181 0.40434 4.64286
89 1M7G AV2 0.00006338 0.41805 4.73934
90 1M7G ADX 0.003805 0.41764 4.73934
91 1M7G ADP 0.008219 0.40205 4.73934
92 1FQK GDP 0.0000008383 0.55732 4.7619
93 1FQJ GDP 0.0000008754 0.55654 4.7619
94 1H65 GDP 0.000001964 0.5358 4.81482
95 1JJV ATP 0.00003059 0.40928 4.85437
96 1VG1 GDP 0.000004506 0.47822 4.86486
97 2CHG ANP 0.001893 0.40361 4.86726
98 2ZR9 DTP 0.0003227 0.40621 4.87106
99 1D5C GDP 0.000002294 0.51248 4.93827
100 5KSZ GCP 0.0001724 0.43216 5
101 1VHT BA3 0.0002147 0.42115 5.04587
102 1UJ2 C5P 0.002303 0.42101 5.15873
103 1UJ2 ADP 0.002733 0.4179 5.15873
104 3DEF GDP 0.0000002184 0.5386 5.34351
105 1JXN MFU 0.03201 0.40138 5.3719
106 5CK5 GDP 0.00001625 0.44662 5.37975
107 1RYH GNP 0.00004071 0.45158 5.41872
108 2BEK ATP 0.006271 0.41552 5.44747
109 2F9L GDP 0.00003041 0.49322 5.52764
110 5N69 ADP 0.0004147 0.41711 5.52764
111 2XTN GTP 0.0000004364 0.56897 5.55556
112 4GBM A3P 0.003161 0.41029 5.57276
113 1WF3 GNP 0.0000006372 0.56968 5.64784
114 1DS6 GDP 0.0000106 0.45853 5.72917
115 1B7T ADP 0.000765 0.40423 5.76923
116 1I4D GDP 0.00002946 0.44055 5.80357
117 3A1S GDP 0.00001537 0.4617 5.81395
118 1AZT GSP 0.000001678 0.55646 5.83333
119 4NCN GTP 0.000008874 0.5152 5.83333
120 1IWE IMP 0.0003704 0.51078 5.83333
121 1G7S GDP 0.000007522 0.46967 5.83333
122 3ZQ6 ADP ALF 0.0002782 0.45937 5.8642
123 3GJ8 GDP 0.00001819 0.54401 5.88235
124 3SBD GNP 0.00003056 0.49743 5.88235
125 3GJ5 GDP 0.00002115 0.45587 5.88235
126 3GJ3 GDP 0.00001449 0.45324 5.88235
127 3GJ7 GDP 0.00001543 0.45188 5.88235
128 3GJ0 GDP 0.00001772 0.4517 5.88235
129 3GJ4 GDP 0.00001831 0.45104 5.88235
130 1G3Q ADP 0.00002989 0.44412 5.90717
131 1MH1 GNP 0.00003565 0.49666 5.91398
132 1GOJ ADP 0.00007097 0.54624 5.91549
133 1IBR GNP 0.00001863 0.50843 6.01852
134 3CH5 GDP 0.00001216 0.46336 6.01852
135 5BXQ GDP 0.00001285 0.46289 6.01852
136 4TTQ ATP 0.0001747 0.41433 6.04651
137 1MR3 G3D 0.000007511 0.46964 6.07735
138 2BVN GNP 0.000004798 0.48999 6.10687
139 1D8T GDP 0.000001172 0.4869 6.10687
140 1YRB GDP 0.00004339 0.45802 6.10687
141 4WZA ADP 0.004564 0.43934 6.11111
142 4WZA ACP 0.004722 0.43866 6.11111
143 3A4M ADP 0.00006599 0.40721 6.15385
144 2FJU GSP 0.00009029 0.46408 6.17978
145 4LPS GDP 0.000001265 0.49448 6.19835
146 3CX8 GSP 0.000002074 0.55258 6.21302
147 1HE1 GDP 0.00006633 0.48885 6.25
148 1G6O ADP 0.0003916 0.41275 6.36364
149 2HV8 GTP 0.00001028 0.5171 6.39535
150 1ZJ6 G3D 0.0000003642 0.51208 6.41711
151 3TMK T5A 0.008951 0.40542 6.48148
152 3UIE ANP 0.0004731 0.4088 6.5
153 2D7C GTP 0.000005039 0.52996 6.58683
154 1IN4 ADP 0.001115 0.41667 6.58683
155 1FZQ GDP 0.000005729 0.4659 6.62983
156 1Z83 AP5 0.0112 0.40003 6.63265
157 1NF3 GNP 0.0001056 0.47504 6.66667
158 4IOK ADP 0.003436 0.41526 6.66667
159 1YZG GDP 0.0000003819 0.51211 6.70391
160 4DID GDP 0.00003422 0.4502 6.73575
161 4U5X GNP 0.00004765 0.46828 6.74157
162 2NGR GDP 0.00001179 0.46871 6.80628
163 4ITR GDP 0.00005943 0.46516 6.80628
164 1A4R GDP 0.0001361 0.45016 6.80628
165 1A4R GNH 0.0001731 0.44144 6.80628
166 1GWN GTP 0.00002319 0.48701 6.82927
167 4DSU GDP 0.00004506 0.49241 6.87831
168 5UQW GDP 0.00006736 0.48113 6.87831
169 5KUT GDP 0.00001151 0.46537 6.87831
170 4MKF AP5 0.005086 0.42268 6.91244
171 1ZD9 GDP 0.000002862 0.51524 6.91489
172 3TK1 GDP 0.000007615 0.44092 6.9697
173 5TB5 GDP 0.000008577 0.47566 7.02703
174 5TAR GDP 0.00001925 0.47082 7.02703
175 4M9Q GNP 0.000002057 0.5344 7.04846
176 1Z08 GNP 0.00001336 0.5079 7.05882
177 2ZEJ GDP 0.00002923 0.50026 7.06522
178 2HCJ GDP 0.0000004154 0.4919 7.16418
179 1GUA GNP 0.00001768 0.50938 7.18563
180 3WXM GTP 0.00002168 0.50362 7.22222
181 1O3Y GTP 0.000004245 0.52836 7.22892
182 1J2J GTP 0.000005583 0.52347 7.22892
183 1OW3 GDP 0.00001263 0.48538 7.25389
184 1S9D GDP 0.000002132 0.489 7.31707
185 1RE0 GDP 0.000001137 0.47859 7.31707
186 1WA5 GTP 0.00002184 0.51308 7.38636
187 1GRN GDP 0.00001672 0.48099 7.38916
188 5IRC GDP 0.00001107 0.47484 7.52688
189 5HPY GDP 0.00001239 0.48499 7.56757
190 4D0N GDP 0.000005649 0.46679 7.56757
191 4K81 GTP 0.00001904 0.51003 7.60234
192 1M7B GTP 0.00003013 0.50351 7.6087
193 1KMQ GNP 0.00004032 0.48818 7.6087
194 2C5L GTP 0.00001866 0.5084 7.69231
195 5O2T GSP 0.00002834 0.50082 7.69231
196 5H56 TYD 0.005508 0.40944 7.69231
197 5H56 ADP 0.005508 0.40944 7.69231
198 3KTA AP5 0.00124 0.40099 7.69231
199 1QF9 ALF 0.005054 0.41849 7.73196
200 1QF9 ADP 0.005054 0.41849 7.73196
201 1QF9 C5P 0.005054 0.41849 7.73196
202 1TQ4 GDP 0.000004025 0.54092 7.77778
203 1P9B GDP 0.000006983 0.49477 7.77778
204 4HDO GNP 0.00002794 0.50108 7.78443
205 1KAO GDP 0.0000175 0.4801 7.78443
206 3KUD GDP 0.000004235 0.51627 7.83133
207 1WQ1 GDP 0.00001135 0.51081 7.83133
208 1NVV GNP 0.00002103 0.50623 7.83133
209 1NVU GTP 0.00002128 0.50602 7.83133
210 1CLU DBG 0.00009414 0.50029 7.83133
211 5UFQ GNP 0.000061 0.48495 7.83133
212 1M2O GNP 0.000004891 0.5305 7.89474
213 1TX4 ALF GDP 0.00004932 0.48458 7.9096
214 1W7J ADP BEF 0.0009567 0.41024 7.94702
215 2A9K GDP 0.00000498 0.49995 8.02139
216 2VB6 ADP BEF 0.002404 0.41519 8.05369
217 1VG0 GDP 0.000008401 0.48447 8.05556
218 1VG9 GDP 0.000005225 0.47659 8.05556
219 3MD0 GDP 0.000001481 0.46999 8.16901
220 2XTZ GSP 0.000003351 0.53732 8.19209
221 4V0K GDP 0.00001528 0.50776 8.28402
222 4MKG AP5 0.005171 0.42133 8.29493
223 2C77 GNP 0.0000004844 0.54989 8.33333
224 2C78 GNP 0.000001779 0.5363 8.33333
225 3AB3 GDP 0.000003292 0.51855 8.33333
226 5I34 GDP 0.0000004707 0.50794 8.33333
227 1RJ9 GCP 0.00009453 0.50144 8.33333
228 1UKZ ADP 0.01068 0.40094 8.37438
229 2A5J GDP 0.00001334 0.46908 8.37696
230 1LFD GNP 0.00001442 0.51098 8.38323
231 2C04 GCP 0.00002124 0.52139 8.41751
232 4NON GDP 0.00002395 0.50585 8.46154
233 2QEN ADP 0.0006363 0.41723 8.57143
234 1KSH GDP 0.000003211 0.52016 8.60215
235 2QN6 GDP 0.0000002332 0.49868 8.60215
236 1Z0A GDP 0.00001692 0.46566 8.62069
237 3FB4 AP5 0.003797 0.42723 8.7963
238 1YZQ GNP 0.000001783 0.55101 8.82353
239 1G16 GDP 0.0001748 0.45704 8.82353
240 3RAB GNP 0.000005019 0.53003 8.87574
241 1U8Z GDP 0.00002282 0.49834 8.92857
242 1Z0F GDP 0.00001499 0.46135 8.93855
243 2WOJ ADP ALF 0.001033 0.43557 9.03955
244 4XTR ATP 0.001022 0.43046 9.03955
245 4XTR ADP 0.0004543 0.428 9.03955
246 4XVU ATP 0.001181 0.42789 9.03955
247 1MKY GDP 0.0000003897 0.50315 9.16667
248 4IDN GNP 0.0001658 0.45743 9.16667
249 1YZN GNP 0.00001147 0.51723 9.18919
250 2HF9 GSP 0.000001683 0.57052 9.29204
251 3Q85 GNP 0.000004877 0.46807 9.46746
252 5KSP GDP 0.00002315 0.45334 9.47368
253 1PUJ GNP 0.0000008328 0.51651 9.57447
254 1S3G AP5 0.007816 0.41343 9.67742
255 1SVI GDP 0.000001288 0.48153 9.74359
256 5UWP GNP 0.00001624 0.51294 9.79021
257 5DIF GNP 0.00001502 0.51234 9.79021
258 5UWH GNP 0.00001521 0.51211 9.79021
259 5UWO GNP 0.00001589 0.51131 9.79021
260 5UWI GNP 0.00001645 0.51068 9.79021
261 5UWT GNP 0.00001683 0.51028 9.79021
262 5UWW GNP 0.00001695 0.51014 9.79021
263 5DI9 GNP 0.00002059 0.50861 9.79021
264 5DHF GNP 0.0000185 0.50856 9.79021
265 5UWS GNP 0.00002224 0.5072 9.79021
266 5UWJ GNP 0.00001666 0.48071 9.79021
267 1GP2 GDP 0.000004715 0.52649 9.85915
268 1CS4 GSP 0.000001984 0.50559 9.90566
269 2GCN GDP 0.0000939 0.46767 9.95025
270 2GCO GNP 0.00005556 0.45897 9.95025
271 4HAT GNP 0.00001781 0.51125 10
272 1UPT GTP 0.00001806 0.49643 10
273 1NRJ GTP 0.000004006 0.51646 10.0917
274 3T12 GDP ALF 0.0000002932 0.56785 10.101
275 3T1O GDP 0.0000001436 0.53474 10.101
276 4CVN ADP 0.00007945 0.40455 10.219
277 1ION ADP 0.00009858 0.43436 10.2881
278 1CXZ GSP 0.00004111 0.48262 10.4651
279 1ZC3 GNP 0.000002005 0.54888 10.6195
280 1KK8 BEF ADP 0.0005469 0.41909 10.7914
281 5M04 GDP 0.000003584 0.46188 10.8333
282 2NCD ADP 0.0002691 0.5113 11.1111
283 2WJG GDP 0.000000158 0.6522 11.1702
284 2BCG GDP 0.00001766 0.48617 11.6505
285 1R4A GNP 0.000005116 0.5274 11.7647
286 1EK0 GNP 0.00002544 0.50073 11.7647
287 2UZI GTP 0.00001527 0.50994 12.2807
288 3BC1 GNP 0.00000759 0.52257 12.3077
289 1GOT GDP 0.000008832 0.50515 12.3288
290 3REF GDP 0.00002945 0.48824 12.3711
291 4LC1 GDP 0.00001766 0.55195 12.4629
292 1G4U GDP 0.00005116 0.46799 12.5
293 1OIX GDP 0.000007053 0.52389 12.5654
294 1OIV GDP 0.00003039 0.49753 12.5654
295 2WJH GDP 0.0000005706 0.50424 12.6506
296 2WJH FLC 0.00001113 0.47035 12.6506
297 2ODE ALF GDP 0.000001228 0.56219 12.766
298 1G7C 5GP 0.000004337 0.46835 12.7778
299 1TU3 GNP 0.000003994 0.53415 12.8655
300 3DDC GNP 0.00002622 0.50223 12.8834
301 2W2X GSP 0.00003799 0.47864 12.9032
302 1X1R GDP 0.00002839 0.50079 12.9213
303 1R2Q GNP 0.000005493 0.54396 12.9412
304 3MJH GTP 0.000006532 0.52527 13.0952
305 1Z06 GNP 0.00002455 0.49925 13.2275
306 3KJI ADP 0.00001876 0.46834 13.7795
307 1E96 GTP 0.00005824 0.48579 13.7931
308 2V7Q ATP 0.0004286 0.4103 14
309 3ZFD ANP 0.000223 0.42225 14.7222
310 1YVD GNP 0.00001207 0.51419 14.7929
311 3QBT GNP 0.00001983 0.48494 15
312 2G77 GDP 0.0000007518 0.52856 15.1515
313 1Z0J GTP 0.0000065 0.52754 15.2542
314 3T5G GDP 0.000004139 0.48886 15.4696
315 3M1I GTP 0.00001822 0.50884 15.7068
316 1XTQ GDP 0.00002354 0.49779 15.8192
317 5L3R GCP 0.00001725 0.50559 15.9468
318 3E70 GDP 0.000003401 0.47902 16.1585
319 3ZIA ADP 0.001321 0.40001 16.3934
320 4HI0 GDP 0.000001115 0.53758 16.5829
321 5L3V GDP 0.000001797 0.49567 16.7224
322 3BFV ADP 0.00002623 0.43762 17.3432
323 4BQS ADP 0.00003211 0.53924 17.6136
324 4BQS K2Q 0.002297 0.43219 17.6136
325 5L3W GDP 0.00001067 0.47054 18.6275
326 4C4P GNP 0.00001012 0.5195 18.6916
327 5L3S GNP 0.00003694 0.49191 19.2568
328 2OM2 GDP 0.000002657 0.52261 19.4444
329 2GJ8 ALF GDP 0.000001026 0.56103 20.3488
330 2QTV GNP 0.00001591 0.50704 20.4082
331 3GUZ PAF 0.0235 0.40835 20.4545
332 2BME GNP 0.0000144 0.51101 20.9677
333 3PQC GDP 0.000008012 0.4821 21.0256
334 3ZS9 ADP ALF 0.0008116 0.43995 21.0526
335 2FH5 GTP 0.000002536 0.52434 21.6216
336 1NN5 ANP 0.007189 0.40584 21.8605
337 1Z2A GDP 0.000004558 0.52709 22.0238
338 1Z0K GTP 0.00002135 0.49953 22.093
339 3RWO GDP 0.00001022 0.5172 22.1622
340 2FFQ GSP 0.000001458 0.55466 22.807
341 4R98 GNH 0.0000002079 0.51368 23.6162
342 5XCO GDP 0.00001047 0.48286 23.8095
343 4BAS GNP 0.000001609 0.53816 25.1256
344 5UWR GNP 0.00001834 0.50872 25.9259
345 5UWU GNP 0.00001515 0.51218 30
346 5UWQ GNP 0.00001531 0.48195 31.8182
347 3W5J GDP 0.000004039 0.42758 35.2941
Pocket No.: 2; Query (leader) PDB : 3T34; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3t34.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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