Receptor
PDB id Resolution Class Description Source Keywords
3T3O 2.5 Å EC: 3.-.-.- MOLECULAR BASIS FOR THE RECOGNITION AND CLEAVAGE OF RNA (CUG BIFUNCTIONAL 5'-3' EXO/ENDORIBONUCLEASE RNASE J THERMUS THERMOPHILUS HB27 PROTEIN-RNA COMPLEX METALLO-BETA-LACTAMASE RNASE J ENDORIBONUCLEASE 5-prime -3-prime EXORIBONUCLEASE METAL DEPENDENT HYRNA HYDROLASE HYDROLASE-RNA COMPLEX
Ref.: MOLECULAR BASIS FOR THE RECOGNITION AND CLEAVAGE OF THE BIFUNCTIONAL 5'-3' EXO/ENDORIBONUCLEASE RNASE J STRUCTURE V. 19 1252 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:701;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
OMC OMU OMG OMG U B:901;
Valid;
none;
submit data n/a n/a n/a n/a
ZN A:600;
Part of Protein;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3BK2 2.1 Å EC: 3.-.-.- CRYSTAL STRUCTURE ANALYSIS OF THE RNASE J/UMP COMPLEX THERMUS THERMOPHILUS RNASE J ENDORIBONUCLEASE EXORIBONUCLEASE METAL DEPENDENT HYDROLASE METALLO-BETA-LACTAMASE HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE DUAL ACTIVITY OF RNASE NAT.STRUCT.MOL.BIOL. V. 15 206 2008
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3T3O - OMC OMU OMG OMG U n/a n/a
2 3BK2 - U5P C9 H13 N2 O9 P C1=CN(C(=O....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3T3O - OMC OMU OMG OMG U n/a n/a
2 3BK2 - U5P C9 H13 N2 O9 P C1=CN(C(=O....
3 4XWT - U5P C9 H13 N2 O9 P C1=CN(C(=O....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3T3O - OMC OMU OMG OMG U n/a n/a
2 3BK2 - U5P C9 H13 N2 O9 P C1=CN(C(=O....
3 4XWT - U5P C9 H13 N2 O9 P C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OMC OMU OMG OMG U; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3BK2; Ligand: U5P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3bk2.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3BK2; Ligand: U5P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3bk2.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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