Receptor
PDB id Resolution Class Description Source Keywords
3WY9 2.3 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STA AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA PYROCOCCUS HORIKOSHII OT3 MULTI-DOMAIN GTPASE AMINOACYL-TRNA DELIVERY GTP AMINOACYSTALK PROTEIN TRANSLATION-RIBOSOMAL PROTEIN COMPLEX
Ref.: MOLECULAR INSIGHTS INTO THE INTERACTION OF THE RIBO STALK PROTEIN WITH ELONGATION FACTOR 1 ALPHA NUCLEIC ACIDS RES. 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:500;
B:500;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3WY9 2.3 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STA AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA PYROCOCCUS HORIKOSHII OT3 MULTI-DOMAIN GTPASE AMINOACYL-TRNA DELIVERY GTP AMINOACYSTALK PROTEIN TRANSLATION-RIBOSOMAL PROTEIN COMPLEX
Ref.: MOLECULAR INSIGHTS INTO THE INTERACTION OF THE RIBO STALK PROTEIN WITH ELONGATION FACTOR 1 ALPHA NUCLEIC ACIDS RES. 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3WY9; Ligand: GDP; Similar sites found: 494
This union binding pocket(no: 1) in the query (biounit: 3wy9.bio2) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1Z0A GDP 0.000000000007432 0.85336 None
2 1BO4 COA 0.004437 0.42252 None
3 4HSE ADP 0.00003524 0.52631 1.25945
4 2DPY ADP 0.0001428 0.4979 1.38249
5 3CV2 OXL 0.01161 0.40064 1.38249
6 1SVK ALF GDP 0.0000000001511 0.83291 1.41643
7 3UIE ANP 0.00001895 0.54243 1.5
8 1Y3A GDP 0.0000000002017 0.80781 1.51976
9 2OM2 GDP 0.0000000001052 0.62819 1.53846
10 2A5J GDP 0.00000000002828 0.72442 1.57068
11 1BH2 GSP 0.0000000006504 0.79754 1.5873
12 4IEE AGS 0.003084 0.42737 1.63265
13 2Z5F A3P 0.001121 0.46539 1.67785
14 1VHT BA3 0.000132 0.50151 1.83486
15 3RC3 ANP 0.002847 0.42903 1.84332
16 1VG8 GNP 0.00000000004269 0.85195 1.93237
17 4IDN GNP 0.0001057 0.51859 1.96937
18 4P32 ADP 0.0001581 0.50986 2.00803
19 1XKV ATP 0.0001169 0.50408 2.07373
20 1VG1 GDP 0.000000000004642 0.85797 2.16216
21 2ZFI ADP 0.000004471 0.54395 2.18579
22 1D2N ANP 0.001206 0.4638 2.20588
23 3E7O 35F 0.02519 0.4106 2.22222
24 1DAK DPU 0.0001093 0.54706 2.23214
25 1DAK ADP 0.005853 0.48301 2.23214
26 3DEF GDP 0.000001412 0.60048 2.29008
27 2FAH GDP 0.00001183 0.5554 2.30415
28 3VM7 GLC 0.01861 0.40165 2.30415
29 1QF5 GDP 0.00006408 0.56759 2.32019
30 2HV8 GTP 0.0000000002161 0.81297 2.32558
31 2BEK ATP 0.0002131 0.40848 2.33463
32 2ZE7 DST 0.009033 0.42834 2.37154
33 2ZE7 AMP 0.008445 0.42834 2.37154
34 2ZPT A3P 0.0126 0.44626 2.37288
35 2D7C GTP 0.0000000002224 0.81235 2.39521
36 2F3R G5P 0.0165 0.4214 2.41546
37 1VKJ A3P 0.003567 0.44037 2.45614
38 3B5J 12D 0.00004906 0.50147 2.46914
39 5HGZ ACO 0.01606 0.41411 2.46914
40 3FYH ADP 0.0001236 0.51939 2.48447
41 2RCN GDP 0.00000000003801 0.80864 2.51397
42 4R43 GDP 0.00001417 0.52366 2.53456
43 1K6M AGS 0.0001729 0.51002 2.5463
44 1T5C ADP 0.0000001728 0.54795 2.5788
45 2AWN ADP 0.0000006883 0.50537 2.62467
46 1VM6 NAD 0.02633 0.40452 2.63158
47 1AQU A3P 0.001333 0.45742 2.6936
48 3TK1 GDP 0.00000000001421 0.79798 2.72727
49 1Q19 APC 0.01121 0.41731 2.76498
50 4TMK T5A 0.006926 0.44229 2.8169
51 3DKP ADP 0.0004045 0.47235 2.85714
52 3QXC ATP 0.00002475 0.55878 2.89256
53 3BOS CDP 0.000008964 0.55152 2.89256
54 4QM7 GTP 0.00007097 0.50852 2.92398
55 2JAQ DCP 0.004492 0.43897 2.92683
56 1G16 GDP 0.000000001344 0.76312 2.94118
57 5HR5 ADP 0.00009375 0.51409 2.99539
58 2BIF ANP 0.000322 0.51169 2.99539
59 2BIF SIN 0.0005292 0.51169 2.99539
60 5HR5 FLC 0.03243 0.406 2.99539
61 1U0J ADP 0.0005912 0.46147 2.99625
62 2F9L GDP 0.0000000001543 0.81365 3.01508
63 2GDJ ANP 0.0001212 0.4974 3.0303
64 3H86 AP5 0.0002437 0.51944 3.125
65 1ZJ6 G3D 0.00000000000991 0.8421 3.20856
66 5CK5 GDP 0.000000008183 0.6922 3.22581
67 3VX3 ADP 0.0001226 0.51081 3.22581
68 2XAU ADP 0.0003556 0.48062 3.22581
69 1YZG GDP 0.00000000001104 0.83984 3.35196
70 2C04 GCP 0.00001967 0.47876 3.367
71 1CR1 TTP 0.00004275 0.53589 3.37838
72 1GWN GTP 0.000000002591 0.74545 3.41463
73 5MEX SZZ 0.004368 0.45745 3.41615
74 5MEX PAP 0.001679 0.45462 3.41615
75 5GJC ATP 0.00008101 0.50577 3.45622
76 2IS6 ADP 0.0001527 0.49259 3.45622
77 2W58 ADP 0.00000853 0.48662 3.46535
78 3FWY ADP 0.0000006754 0.61937 3.50318
79 4GOX A3P 0.00007032 0.52963 3.51438
80 1FL2 FAD 0.04077 0.4087 3.54839
81 1Z4O GL1 0.01701 0.40982 3.61991
82 3MD0 GDP 0.00000000001951 0.81674 3.66197
83 1OIV GDP 0.0000000001485 0.82124 3.66492
84 1OIX GDP 0.0000000001764 0.81745 3.66492
85 1IWE IMP 0.00006505 0.59922 3.68664
86 4OI4 ATP 0.0001193 0.51812 3.68664
87 5KUT GDP 0.000000002278 0.72826 3.7037
88 1ION ADP 0.00001147 0.55301 3.7037
89 4LPS GDP 0.00000003004 0.62386 3.71901
90 1JI0 ATP 0.00003003 0.53096 3.75
91 2J0V GDP 0.000000003538 0.71904 3.77358
92 4KFU ACP 0.00000556 0.53045 3.77358
93 3DC4 ADP 0.0000254 0.51268 3.77907
94 1M7G AV2 0.000001167 0.58991 3.79147
95 1M7G ADX 0.000008631 0.58991 3.79147
96 1M7G ADP 0.00002259 0.5647 3.79147
97 1G3Q ADP 0.000005026 0.52737 3.79747
98 1M7B GTP 0.000000002032 0.58678 3.80435
99 1YRB GDP 0.00000000001994 0.83739 3.81679
100 4LC1 GDP 0.0000000002158 0.73807 3.91705
101 5I34 GDP 0.000003338 0.57565 3.91705
102 1FEC FAD 0.04778 0.41064 3.91705
103 1NJF ADP 0.00001997 0.54977 4
104 1NJF AGS 0.00002651 0.5486 4
105 4ZNL BEF ADP 0.00002832 0.53088 4.0146
106 1LVG ADP 0.0000004181 0.59454 4.0404
107 2IXE ATP 0.0001235 0.51521 4.05904
108 3GJ5 GDP 0.00000000003047 0.81858 4.0724
109 3GJ4 GDP 0.0000000000479 0.80383 4.0724
110 3DZD ADP 0.0001192 0.50639 4.07609
111 3QKT ANP 0.0002973 0.50017 4.12979
112 1Z2A GDP 0.0000000008268 0.5737 4.14747
113 2ZPA ADP 0.0002108 0.49918 4.14747
114 1A4R GNH 0.000000001058 0.75722 4.18848
115 1A4R GDP 0.000000001349 0.75588 4.18848
116 2QZ4 ADP 0.00002637 0.53546 4.19847
117 2IYL GDP 0.000002249 0.58026 4.22535
118 2XTZ GSP 0.00000000003827 0.85106 4.23729
119 2PL3 ADP 0.0004688 0.46625 4.23729
120 1PUJ GNP 0.00000000005154 0.81724 4.25532
121 4Q1A 2XZ 0.000241 0.58326 4.28571
122 4Q1A UDP 0.000241 0.58326 4.28571
123 3RWO GDP 0.0000000001271 0.82465 4.32432
124 1F2U ATP 0.0004759 0.49347 4.37788
125 1OYY AGS 0.003855 0.42545 4.37788
126 3MGB PAP 0.005082 0.43272 4.38871
127 1Z0F GDP 0.00000000001024 0.84142 4.46927
128 4U5X GNP 0.000000007664 0.71859 4.49438
129 2G77 GDP 0.00000000001016 0.69587 4.54545
130 1SQ5 ADP 0.000006172 0.52201 4.54545
131 2G77 AF3 0.006844 0.42064 4.54545
132 3P4X ADP 0.00004044 0.51679 4.60048
133 4DID GDP 0.000000002939 0.72293 4.60526
134 4IOK XPO 0.0001274 0.51873 4.60829
135 4IOK ADP 0.0001645 0.51873 4.60829
136 1JJ7 ADP 0.000001104 0.62585 4.61538
137 1FNN ADP 0.0002004 0.42514 4.62725
138 4TTQ ATP 0.00006895 0.50912 4.65116
139 1R2Q GNP 0.0000000002079 0.83621 4.70588
140 1Z06 GNP 0.00000000004423 0.84445 4.7619
141 4DSU GDP 0.0000000001187 0.82937 4.7619
142 5UQW GDP 0.00000000009905 0.82679 4.7619
143 3MJH GTP 0.0000000001107 0.57044 4.7619
144 1GOJ ADP 0.00000007787 0.68605 4.78873
145 1P72 ADP 0.0002379 0.51703 4.79042
146 1O3Y GTP 0.0000000001485 0.81448 4.81928
147 1OS1 PYR 0.000172 0.52116 4.83871
148 1OS1 ATP 0.0001595 0.52116 4.83871
149 5TB5 GDP 0.00000000004596 0.81496 4.86486
150 5TAR GDP 0.00000000005046 0.69122 4.86486
151 1RE0 GDP 0.000000000005539 0.8427 4.87805
152 1F9V ADP 0.000002126 0.54619 4.89914
153 1WF3 GNP 0.0000000002706 0.81115 4.98339
154 2NCD ADP 0.000001188 0.60821 5
155 3A4M ADP 0.000003486 0.55271 5
156 2OG2 MLI 0.00001195 0.42453 5.01393
157 3BFX A3P 0.0002425 0.42117 5.06757
158 2JLR ANP 0.0001631 0.49973 5.06912
159 2WOJ ADP ALF 0.00001386 0.57159 5.08475
160 3ZS9 ADP ALF 0.0000108 0.4211 5.08475
161 1QF9 ALF 0.0007017 0.49808 5.15464
162 1QF9 ADP 0.0007017 0.49808 5.15464
163 1QF9 C5P 0.0007017 0.49808 5.15464
164 4XVU ATP 0.00001149 0.56913 5.21739
165 5XCO GDP 0.00000000006759 0.8115 5.26316
166 5KSP GDP 0.000000008803 0.69996 5.26316
167 4QOS ADP 0.0002301 0.44688 5.28302
168 5KSZ GCP 0.0000001082 0.65131 5.29954
169 5O2T GSP 0.0000000002974 0.80907 5.32544
170 1Q20 A3P 0.00419 0.45368 5.35117
171 1Q20 PLO 0.00419 0.45368 5.35117
172 1UKZ ADP 0.0005656 0.49896 5.41872
173 3COB ADP 0.0000002437 0.56481 5.42005
174 1G6H ADP 0.000003156 0.50222 5.44747
175 4AF0 IMP 0.01445 0.41339 5.52995
176 3T1O GDP 0.0000000001504 0.78997 5.55556
177 2XTN GTP 0.00000195 0.60779 5.55556
178 5L3W GDP 0.000005182 0.56976 5.55556
179 2GWH A3P 0.001735 0.4518 5.7047
180 3T12 GDP ALF 0.0000000003211 0.59726 5.88235
181 5TIV A3P 0.003782 0.46604 5.92885
182 3B9Q MLI 0.00002602 0.56138 5.96026
183 2PZ8 APC 0.01214 0.41557 5.99078
184 5BW4 SAM 0.02224 0.40391 5.99251
185 2QG6 NMN 0.0003025 0.50523 6.03015
186 5L3R GCP 0.000001742 0.46585 6.14334
187 3REF GDP 0.000000008864 0.54984 6.18557
188 4H1V GNP 0.0000003642 0.54273 6.23306
189 2A5F GTP 0.0000000002109 0.81025 6.28571
190 1H65 GDP 0.00000282 0.59721 6.2963
191 1TU3 GNP 0.0000000001326 0.82372 6.32911
192 2XT3 ADP 0.0000004617 0.55456 6.39535
193 2UZI GTP 0.0000000002802 0.80726 6.45161
194 1CLU DBG 0.000000001888 0.80079 6.45161
195 1NVV GNP 0.0000000004901 0.79803 6.45161
196 3DDC GNP 0.0000000007006 0.79014 6.45161
197 4K81 GTP 0.000000001657 0.77397 6.45161
198 4PX9 ADP 0.0001606 0.48835 6.50685
199 1U8Z GDP 0.0000000001778 0.58754 6.54762
200 3T5G GDP 0.00000000001641 0.83666 6.62983
201 2CJW GDP 0.00000000001096 0.83449 6.77083
202 1XTQ GDP 0.00000000004995 0.83824 6.77966
203 3GJ3 GDP 0.00000000001658 0.82588 6.78733
204 3GJ0 GDP 0.0000000000341 0.77482 6.78733
205 1KO8 6PG 0.0003601 0.48769 6.85714
206 3W5J GDP 0.0000001823 0.57446 6.86275
207 4R3L COA 0.04163 0.40731 6.93642
208 5BXQ GDP 0.00000000003697 0.81454 6.94444
209 3CH5 GDP 0.00000000004503 0.8104 6.94444
210 1IBR GNP 0.00000000135 0.77565 6.94444
211 1NY5 ADP 0.0001467 0.50453 6.97674
212 1XMV ADP 0.00001897 0.53927 7.02247
213 4QRH 0O2 0.006938 0.42598 7.14286
214 2A9K GDP 0.00000000009722 0.80816 7.17489
215 3Q72 GNP 0.00000000004136 0.80124 7.22892
216 4ITR GDP 0.000000004387 0.73056 7.27848
217 1T8U A3P 0.001703 0.45635 7.35294
218 1T8U UAP SGN IDS SGN 0.005531 0.45418 7.35294
219 5MZN ADP 0.0009658 0.44347 7.37327
220 3KUD GDP 0.0000000001674 0.80457 7.40741
221 2HT6 GDP 0.000000000001189 0.87444 7.47126
222 5CUQ NSC 0.03899 0.40287 7.49064
223 3BD9 A3P 0.004521 0.42463 7.5
224 1KSH GDP 0.000000000002668 0.89389 7.52688
225 3GJ8 GDP 0.00000000003359 0.74742 7.6087
226 3RAB GNP 0.00000000003897 0.85066 7.69231
227 2HF9 GSP 0.00000002489 0.58286 7.9646
228 1ZD9 GDP 0.0000000001927 0.63549 7.97872
229 1LFD GNP 0.0000000002847 0.80691 8.04598
230 3FVQ ATP 0.0001305 0.51181 8.07799
231 3Q85 GNP 0.000000000001269 0.87929 8.28402
232 4V0K GDP 0.0000000003001 0.57323 8.28402
233 1X1R GDP 0.0000000007689 0.78809 8.29493
234 2I4I AMP 0.01513 0.40543 8.39329
235 4WOP CTP 0.0006808 0.47615 8.44444
236 2GJ8 ALF GDP 0.00000000005983 0.56574 8.52535
237 1YQT ADP 0.00001756 0.50659 8.52535
238 1FZQ GDP 0.000000000001969 0.87016 8.75576
239 2FFQ GSP 0.00000000006601 0.84232 8.77193
240 1YZQ GNP 0.00000000005966 0.84456 8.82353
241 1ZC3 GNP 0.0000000002471 0.81317 8.84956
242 2B8T THM 0.004999 0.43489 8.96861
243 2ODE ALF GDP 0.0000000001192 0.83533 8.98618
244 4R2I ANP 0.0009397 0.44417 9.04762
245 3QBT GNP 0.0000000001003 0.56947 9.1954
246 3EC1 GDP 0.00000000005554 0.80601 9.21409
247 4HAT GNP 0.000000001007 0.78501 9.21659
248 5DIF GNP 0.0000000009945 0.7824 9.21659
249 5UWP GNP 0.00000000114 0.78227 9.21659
250 5UWW GNP 0.000000001124 0.77969 9.21659
251 5UWU GNP 0.000000001176 0.77869 9.21659
252 5UWI GNP 0.0000000013 0.77649 9.21659
253 5UWR GNP 0.000000001446 0.77414 9.21659
254 5UWH GNP 0.00000000164 0.77135 9.21659
255 5DHF GNP 0.000000001656 0.77114 9.21659
256 5UWO GNP 0.000000001695 0.77062 9.21659
257 5DI9 GNP 0.000000002109 0.76862 9.21659
258 5UWQ GNP 0.000000001141 0.53508 9.21659
259 5UWJ GNP 0.000000001429 0.53284 9.21659
260 1JJV ATP 0.00001212 0.51632 9.2233
261 4KOT CE3 0.04373 0.40523 9.25926
262 3ZQ6 ADP ALF 0.000007539 0.58504 9.375
263 4P4T GDP 0.00000005124 0.55644 9.375
264 4U00 ADP 0.000002935 0.50364 9.375
265 1YTM ATP 0.00001493 0.45256 9.375
266 3TBK ANP 0.001399 0.43716 9.375
267 2D2F ADP 0.000116 0.4298 9.375
268 1GUA GNP 0.000000001111 0.53367 9.58084
269 1OFH ADP 0.00004959 0.52215 9.77011
270 5UFQ GNP 0.0000000001278 0.82453 9.83607
271 3GJ7 GDP 0.00000000003026 0.81338 10.2041
272 4X8O AP5 0.0008504 0.5028 10.2804
273 2GCO GNP 0.000000004481 0.72641 10.4478
274 2GCN GDP 0.000000009 0.72187 10.4478
275 1D5C GDP 0.00000000004946 0.82258 10.4938
276 1P9B GDP 0.000008588 0.5651 10.5991
277 5KDO GDP 0.0000000003231 0.61454 10.8108
278 4XTR ADP 0.000006537 0.57373 10.8108
279 4XTR ATP 0.0000093 0.57373 10.8108
280 5HCN GCP 0.000000001908 0.73197 10.8295
281 1OE0 TTP 0.002704 0.45506 10.8696
282 4BAS GNP 0.000000000902 0.77177 11.0553
283 2OFW ADX 0.00003603 0.5687 11.0577
284 5IRC GDP 0.0000000622 0.66298 11.2903
285 4D0N GDP 0.000000001707 0.72956 11.3514
286 5HPY GDP 0.000000004491 0.72636 11.3514
287 1KMQ GNP 0.00000001503 0.71384 11.413
288 3FB4 AP5 0.0005081 0.50918 11.5741
289 1MR3 G3D 0.00000000007558 0.79956 11.6022
290 1S9D GDP 0.00000000001832 0.75814 11.8227
291 3CX8 GSP 0.0000000001807 0.82606 11.9816
292 3A1S GDP 0.00000003604 0.62328 11.9816
293 3ZFD ANP 0.0000143 0.54837 11.9816
294 1S3G AP5 0.0006179 0.50467 11.9816
295 3B7G ANP 0.001013 0.45599 12.1739
296 1UJ2 ADP 0.00003894 0.54877 12.3016
297 1UJ2 C5P 0.00004641 0.54489 12.3016
298 1ZIN AP5 0.0003957 0.51493 12.4424
299 4D81 ADP 0.00001787 0.54664 12.5
300 2RGX AP5 0.0008636 0.49924 12.5
301 2GMV PEP 0.004763 0.44686 12.5
302 2GMV UN8 0.004403 0.44577 12.5
303 1NHX FTB 0.009783 0.44484 12.5
304 1NHX PEP 0.009485 0.44464 12.5
305 4HUT ATP 0.02264 0.4118 12.5
306 3JVH HHV 0.02469 0.41337 12.5683
307 1NRJ GTP 0.00000002674 0.69508 12.6728
308 3IUY AMP 0.006147 0.41818 12.7193
309 1CXZ GSP 0.000000006916 0.72758 12.7907
310 2PEZ DAT 0.00001755 0.57574 12.8492
311 2PEZ GGZ 0.00001755 0.57574 12.8492
312 1SVI GDP 0.0000000003587 0.75669 13.1336
313 1KY3 GDP 0.0000000001602 0.79319 13.1868
314 4HI0 GDP 0.00000001398 0.56524 13.5678
315 1NVU GTP 0.0000000004615 0.79936 14.4578
316 1Z0K GTP 0.000000000125 0.81824 14.4928
317 1NN5 ANP 0.00007277 0.54208 14.8837
318 1TAD ALF 0.00000000014 0.83175 15.625
319 1TAD GDP 0.00000000014 0.83175 15.625
320 1KAO GDP 0.00000000008707 0.81051 15.625
321 1W0J ADP 0.000004415 0.5763 15.625
322 2V7Q ATP 0.000005375 0.56899 15.625
323 2VVG ADP 0.00000006014 0.56553 15.625
324 1W0J ADP BEF 0.0001194 0.51138 15.625
325 2V7Q ADP 0.00009759 0.5019 15.625
326 2CK3 ANP 0.0001449 0.426 15.625
327 1KUV CA5 0.01734 0.42027 15.625
328 1CJW COT 0.01545 0.41914 15.625
329 3ZL8 ADP 0.01933 0.40374 15.625
330 1R4A GNP 0.0000000001498 0.81773 15.6863
331 4C4P GNP 0.0000000001882 0.81917 15.8879
332 4DCT GDP 0.000000000005258 0.85536 16.3594
333 3PQC GDP 0.000000005212 0.63646 16.5899
334 4MKG AP5 0.0002837 0.52259 16.5899
335 4MKF AP5 0.0003854 0.51674 17.5115
336 1GXU 2HP 0.003444 0.42841 17.5824
337 2BME GNP 0.0000000001687 0.81842 17.7419
338 1GP2 GDP 0.0000000003014 0.58583 18.3099
339 1UPT GTP 0.0000000002557 0.79911 18.3333
340 4HDO GNP 0.000000000898 0.78465 18.75
341 2NGR GDP 0.000000001719 0.73416 18.75
342 1NF3 GNP 0.000000007892 0.73384 18.75
343 1GRN GDP 0.000000003764 0.73013 18.75
344 1OW3 GDP 0.000000009659 0.71002 18.75
345 2Y65 ADP 0.0000001394 0.57403 18.75
346 4AG5 ADP 0.00002363 0.54227 18.75
347 4NON GDP 0.0000000002544 0.53699 18.75
348 2CHG ANP 0.00003365 0.53596 18.75
349 1TX4 ALF GDP 0.00000003401 0.52766 18.75
350 3RLF ANP 0.0001235 0.51736 18.75
351 2ZR9 DTP 0.00006457 0.51048 18.75
352 2WHX ADP 0.00001958 0.50449 18.75
353 4YMU ATP 0.0001192 0.4945 18.75
354 5LB3 ADP 0.0002095 0.48286 18.75
355 4YS0 ADP 0.001364 0.45693 18.75
356 4KBF AMP 0.004251 0.42075 18.75
357 1G7S GDP 0.0000000000001353 0.84397 19.1244
358 1YZN GNP 0.0000000004168 0.54432 20
359 2C5L GTP 0.0000000002486 0.81303 21.875
360 1M2O GNP 0.0000000005508 0.7924 21.875
361 2QTV GNP 0.000000001989 0.7611 21.875
362 2ZEJ GDP 0.0000000076 0.73747 21.875
363 1FP6 ADP 0.000005801 0.57051 21.875
364 4BQS K2Q 0.0001238 0.53624 21.875
365 4BQS ADP 0.00001108 0.5266 21.875
366 2QQ0 THM 0.0001423 0.52539 21.875
367 2QQ0 ANP 0.0001641 0.52539 21.875
368 2QQ0 TMP 0.0001832 0.52292 21.875
369 4ZG4 VO4 ADP 0.0001166 0.5186 21.875
370 4GBM A3P 0.0005291 0.48564 21.875
371 1W7J ADP BEF 0.00005314 0.44826 21.875
372 1Z6T ADP 0.000127 0.43562 21.875
373 2D7D ADP 0.002788 0.4322 21.875
374 2FSH ANP 0.003607 0.42414 21.875
375 2VOS ADP 0.0159 0.40968 21.875
376 3BC1 GNP 0.00000000007498 0.83626 22.0339
377 1DAR GDP 0.00000000000326 0.85968 22.5806
378 4R98 GNH 0.000000002019 0.72608 23.2472
379 1ZUI SKM 0.0002443 0.52078 23.8095
380 1YVD GNP 0.0000000004429 0.79719 24.8521
381 1MKY GDP 0.0000000000003421 0.90654 25
382 4NCN GTP 0.00000000004366 0.84117 25
383 1S8F GDP 0.0000000000888 0.83888 25
384 1VG9 GDP 0.00000000001786 0.82976 25
385 1VG0 GDP 0.00000000003046 0.8284 25
386 1F6B GDP 0.00000000007929 0.79856 25
387 2BCG GDP 0.0000000001939 0.63562 25
388 1IHU AF3 0.000003784 0.59083 25
389 1IHU ADP 0.000004246 0.59083 25
390 3E70 GDP 0.000001682 0.59 25
391 1BG2 ADP 0.00000003848 0.57258 25
392 3IIJ ADP 0.000005461 0.56182 25
393 3NHB ADP 0.00001081 0.56003 25
394 4CVN ADP 0.000008393 0.55799 25
395 3H4S ADP 0.0000004009 0.55552 25
396 4FRZ ADP 0.000002138 0.54548 25
397 5TSH ANP 0.00002894 0.52716 25
398 4WZ6 ATP 0.0000127 0.51217 25
399 1B0U ATP 0.0001428 0.50255 25
400 5X40 ACP 0.0002553 0.50153 25
401 1W5T ANP 0.0002426 0.49842 25
402 5TSH ADP 0.00008957 0.47901 25
403 1W5T ADP 0.0005475 0.47642 25
404 1G6O ADP 0.00007576 0.46432 25
405 1G3M PCQ 0.004653 0.4571 25
406 1G3M A3P 0.004653 0.4571 25
407 1NST A3P 0.001554 0.45414 25
408 1J99 AND 0.005928 0.44582 25
409 2C9O ADP 0.00006009 0.43324 25
410 2GK6 ADP 0.00217 0.4277 25
411 1Z0J GTP 0.0000000006275 0.5409 25.4237
412 2WJG GDP 0.00000000001103 0.79708 26.0638
413 5UWT GNP 0.000000001767 0.76971 26.087
414 5FG3 GDP 0.00000000000004308 0.94284 26.4977
415 5UWS GNP 0.000000001882 0.77115 27.2727
416 1GOT GDP 0.0000000002016 0.80427 28.125
417 2WIC GNP 0.0000000003392 0.70681 28.125
418 4WZA ACP 0.0000447 0.58513 28.125
419 4WZA ADP 0.0000447 0.58513 28.125
420 2KIN ADP 0.00000006 0.56529 28.125
421 3ZIA ADP 0.000007601 0.56477 28.125
422 3BFV ADP 0.000006301 0.55885 28.125
423 3ZIA ATP 0.000009879 0.55293 28.125
424 3KJI ADP 0.00002669 0.53813 28.125
425 3KTA AP5 0.00006278 0.51999 28.125
426 1WA5 GTP 0.000000001385 0.49572 28.125
427 2B8W ALF 5GP 0.0003767 0.49499 28.125
428 5WRJ A3P 0.0004921 0.48913 28.125
429 5WRI A3P 0.0005444 0.48304 28.125
430 4IHQ ADP 0.0002439 0.47973 28.125
431 1XX6 ADP 0.0003357 0.47622 28.125
432 2WJH GDP 0.00000000005172 0.8075 29.5181
433 2WJH FLC 0.0000001439 0.6453 29.5181
434 1AZT GSP 0.0000000001086 0.83741 31.25
435 3AB3 GDP 0.0000000000445 0.83316 31.25
436 1TQ4 GDP 0.0000000003124 0.60815 31.25
437 1Z08 GNP 0.0000000006901 0.5758 31.25
438 1WQ1 GDP 0.000000000989 0.57001 31.25
439 2QEN ADP 0.000007621 0.56765 31.25
440 2Q2Y MKR 0.00009059 0.54754 31.25
441 2Q2Y ADP 0.00009596 0.54754 31.25
442 1V8K ANP 0.00001397 0.54231 31.25
443 1CS4 GSP 0.0000000003093 0.53777 31.25
444 2CE7 ADP 0.00002721 0.5348 31.25
445 1KK8 BEF ADP 0.00004946 0.52774 31.25
446 5I0H ADP BEF 0.00006622 0.52644 31.25
447 1B7T ADP 0.00004941 0.52223 31.25
448 1OXV ANP 0.00004416 0.51498 31.25
449 5BQ5 ADP BEF 0.00009893 0.46214 31.25
450 1P3D ANP 0.006464 0.42751 31.25
451 1GQY ACP 0.01179 0.40879 31.25
452 4PSW COA 0.01559 0.40283 31.5789
453 3QF7 ANP 0.0002375 0.49662 32
454 2FH5 GTP 0.00000000004781 0.83161 32.243
455 1JWY GDP 0.00000001941 0.69143 34.375
456 1IN4 ADP 0.00001769 0.55236 34.375
457 5H56 ADP 0.0001012 0.53301 34.375
458 5H56 TYD 0.0001012 0.53301 34.375
459 4PFO ADP 0.00007739 0.53166 34.375
460 1JWY ADP 0.00002987 0.52977 34.375
461 2VB6 ADP BEF 0.00009612 0.52282 34.375
462 4FCW ADP 0.00005337 0.51762 34.375
463 3TMK T5A 0.0002602 0.51026 34.375
464 2VF7 ADP 0.0001102 0.50244 34.375
465 4LJ9 ACP 0.0001515 0.49275 34.375
466 4RD0 GDP 0.000000000001506 0.91049 34.6988
467 2QN6 GDP 0.0000000000001963 0.91158 35.5072
468 5M04 GDP 0.000000000005644 0.84231 37.5
469 1DS6 GDP 0.0000000005268 0.754 37.5
470 1MH1 GNP 0.000000004153 0.75082 37.5
471 2W2X GSP 0.00000000337 0.73978 37.5
472 1I4D GDP 0.0000000009444 0.73672 37.5
473 2FJU GSP 0.000000004255 0.73475 37.5
474 1E96 GTP 0.000000007853 0.73394 37.5
475 3SBD GNP 0.00000001568 0.71874 37.5
476 1FQJ GDP 0.00000000008535 0.59834 37.5
477 1FQK GDP 0.0000000002903 0.58685 37.5
478 1HE1 GDP 0.000000003109 0.57854 37.5
479 1G4U GDP 0.00000001099 0.57723 37.5
480 2WKQ GTP 0.000000007803 0.54207 37.5
481 1R6B ADP 0.00006743 0.51272 37.5
482 4PJ3 ANP 0.001881 0.44784 37.5
483 1RYH GNP 0.0203 0.41301 37.5
484 4B47 GDP 0.00000000000006473 0.93446 40.625
485 1EK0 GNP 0.0000000005318 0.79317 40.625
486 3M1I GTP 0.000000001674 0.7709 40.625
487 4A4Z ANP 0.001207 0.44961 40.625
488 1KK1 GNP 0.000000000001472 0.87003 41.2195
489 5L3S GNP 0.000001613 0.61441 43.75
490 5L3V GDP 0.0000007705 0.60993 43.75
491 1G41 ADP 0.00003866 0.5274 43.75
492 5N69 ADP 0.00004643 0.52639 43.75
493 1XP8 AGS 0.00003997 0.51703 43.75
494 1J2J GTP 0.0000000005386 0.57765 44.4444
495 1RRC ADP 0.000006279 0.50797 50
Pocket No.: 2; Query (leader) PDB : 3WY9; Ligand: GDP; Similar sites found: 8
This union binding pocket(no: 2) in the query (biounit: 3wy9.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1QF5 RPL 0.01226 0.47064 2.32019
2 1W78 ADP 0.02136 0.40481 2.60664
3 1W78 PD8 0.04566 0.40422 2.60664
4 1MAR ZST 0.03118 0.44153 2.85714
5 1MAR NAP 0.03118 0.44153 2.85714
6 5EP2 AZU 0.02279 0.40014 5.07812
7 2J5V PCA 0.03553 0.40103 6.81199
8 1QHG ATP 0.01347 0.40596 31.25
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