Receptor
PDB id Resolution Class Description Source Keywords
3ZBQ 1.7 Å NON-ENZYME: OTHER PROTOFILAMENT OF TUBZ FROM BACTERIOPHAGE PHIKZ PSEUDOMONAS PHAGE PHIKZ VIRAL PROTEIN FTSZ TUBULIN TUBZ CYTOSKELETON
Ref.: STRUCTURE OF THE TUBULIN/FTSZ-LIKE PROTEIN TUBZ FRO PSEUDOMONAS BACTERIOPHAGE PHIKZ J.MOL.BIOL. V. 425 2164 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:999;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3ZBQ 1.7 Å NON-ENZYME: OTHER PROTOFILAMENT OF TUBZ FROM BACTERIOPHAGE PHIKZ PSEUDOMONAS PHAGE PHIKZ VIRAL PROTEIN FTSZ TUBULIN TUBZ CYTOSKELETON
Ref.: STRUCTURE OF THE TUBULIN/FTSZ-LIKE PROTEIN TUBZ FRO PSEUDOMONAS BACTERIOPHAGE PHIKZ J.MOL.BIOL. V. 425 2164 2013
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3ZBQ; Ligand: GDP; Similar sites found: 56
This union binding pocket(no: 1) in the query (biounit: 3zbq.bio1) has 22 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1ZGS XMM 0.0005542 0.49326 1.5015
2 1R37 NAD 0.01249 0.40599 2.1021
3 3F81 STT 0.01362 0.41918 2.18579
4 1MO9 FAD 0.04407 0.40808 2.4024
5 4PLG NAI 0.01549 0.40489 2.4024
6 3UOY NAP 0.04121 0.40445 2.4024
7 3UOY FAD 0.04121 0.40445 2.4024
8 3B5J 12D 0.02227 0.40485 2.46914
9 1O8B ABF 0.01563 0.40836 2.73973
10 1T26 NAI 0.01335 0.4126 2.79503
11 1X7D ORN 0.01334 0.40786 3.003
12 1X7D NAD 0.01144 0.40172 3.003
13 3MBI HSX 0.02121 0.40171 3.13589
14 1V59 FAD 0.01198 0.4174 3.3033
15 3CGD FAD 0.0451 0.40709 3.6036
16 3CGD NAD 0.0451 0.40709 3.6036
17 3CGD COA 0.0451 0.40709 3.6036
18 3GGO NAI 0.02395 0.40078 3.82166
19 3GGO ENO 0.02395 0.40078 3.82166
20 2VHW NAI 0.01519 0.40426 3.9039
21 3GD4 NAD 0.01895 0.42437 4.2042
22 3GD4 FAD 0.01277 0.42437 4.2042
23 1SOW NAD 0.01128 0.40569 4.2042
24 4OYA 1VE 0.02439 0.41273 4.5045
25 5BUK FAD 0.01985 0.40545 4.5045
26 2GND MAN MMA 0.01317 0.41659 5.15873
27 2PHW MAN MAN 0.01489 0.41385 5.15873
28 2PHF MAN MAN 0.01616 0.41202 5.15873
29 2PHR MAN MAN 0.01639 0.41171 5.15873
30 2PHR MAN MAN BMA MAN 0.01691 0.40665 5.15873
31 4ISS TAR 0.01426 0.41673 5.40541
32 3UCL NAP 0.04144 0.40487 6.00601
33 1T9D P22 0.02353 0.40361 6.00601
34 2UVO NDG 0.01388 0.41845 6.43275
35 2UVO NAG 0.01456 0.4156 6.43275
36 4EI7 GDP 0.0000009575 0.53285 6.60661
37 1LES GLC FRU 0.005176 0.43177 7.18232
38 3Q9T FAY 0.01367 0.435 7.20721
39 3CTY FAD 0.01321 0.41456 7.50751
40 5UAV TFB 0.01483 0.40474 7.50751
41 5UAV NDP 0.01483 0.40474 7.50751
42 3CB2 GDP 0.0000001319 0.58089 8.10811
43 1W5F G2P 0.000002303 0.50142 9.00901
44 4DXD GDP 0.0000003137 0.53235 9.09091
45 1RQ2 CIT 0.000000643 0.57499 9.42408
46 1OYY AGS 0.01427 0.40617 9.60961
47 5J60 FAD 0.01594 0.4072 10.3125
48 2R75 01G 0.000001617 0.49664 10.9467
49 5XDT MB3 0.0000003201 0.61063 11.6883
50 5XDT GDP 0.0000001644 0.61063 11.6883
51 1OFU GDP 0.000003253 0.53971 13.4454
52 2RHO GSP 0.000008125 0.53243 14.4615
53 2RHO GDP 0.000005838 0.50332 14.4615
54 1VBO MAN MAN MAN 0.003784 0.44206 15.4362
55 1VBO MAN 0.007027 0.4265 15.4362
56 2VAP GDP 0.00000004116 0.64174 16.2088
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