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Receptor
PDB id Resolution Class Description Source Keywords
3ZBQ 1.7 Å NON-ENZYME: OTHER PROTOFILAMENT OF TUBZ FROM BACTERIOPHAGE PHIKZ PSEUDOMONAS PHAGE PHIKZ VIRAL PROTEIN FTSZ TUBULIN TUBZ CYTOSKELETON
Ref.: STRUCTURE OF THE TUBULIN/FTSZ-LIKE PROTEIN TUBZ FRO PSEUDOMONAS BACTERIOPHAGE PHIKZ J.MOL.BIOL. V. 425 2164 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:999;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3ZBQ 1.7 Å NON-ENZYME: OTHER PROTOFILAMENT OF TUBZ FROM BACTERIOPHAGE PHIKZ PSEUDOMONAS PHAGE PHIKZ VIRAL PROTEIN FTSZ TUBULIN TUBZ CYTOSKELETON
Ref.: STRUCTURE OF THE TUBULIN/FTSZ-LIKE PROTEIN TUBZ FRO PSEUDOMONAS BACTERIOPHAGE PHIKZ J.MOL.BIOL. V. 425 2164 2013
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3ZBQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3ZBP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3ZBQ; Ligand: GDP; Similar sites found with APoc: 112
This union binding pocket(no: 1) in the query (biounit: 3zbq.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 2ZFZ ARG None
2 4WG0 CHD None
3 1ZGS XMM 1.5015
4 5YSN 5AD 1.5015
5 4D52 GIV 1.5873
6 3E1T FAD 1.8018
7 4PLT OXM 1.81269
8 4PLT NAI 1.81269
9 1XXR MAN 1.86335
10 2ZXI FAD 2.1021
11 1R37 NAD 2.1021
12 3AB1 FAD 2.1021
13 5GVR LMR 2.13675
14 3F81 STT 2.18579
15 4TVD BGC 2.4024
16 5TWB FAD 2.4024
17 1MO9 FAD 2.4024
18 1MO9 KPC 2.4024
19 4PLG NAI 2.4024
20 4PLG OXM 2.4024
21 3UOY NAP 2.4024
22 3UOY FAD 2.4024
23 3B5J 12D 2.46914
24 4A59 AMP 2.7027
25 2CE7 ADP 2.7027
26 1O8B ABF 2.73973
27 1T26 NAI 2.79503
28 1T26 GBD 2.79503
29 1JQY A32 2.91262
30 1X7D ORN 3.003
31 1X7D NAD 3.003
32 3V1S 0LH 3.10559
33 3MBI HSX 3.13589
34 4EKV BTN 3.14465
35 5H9P TD2 3.16456
36 1OFS SUC 3.20856
37 1V59 FAD 3.3033
38 3CGD FAD 3.6036
39 3CGD NAD 3.6036
40 3CGD COA 3.6036
41 4YKG NAD 3.6036
42 3GGO NAI 3.82166
43 3GGO ENO 3.82166
44 3S5W NAP 3.9039
45 1BW9 NAD 3.9039
46 2VHW NAI 3.9039
47 3GD4 FAD 4.2042
48 1SOW NAD 4.2042
49 5ODQ FAD 4.28571
50 4OYA 1VE 4.5045
51 5BUK FAD 4.5045
52 6BYF CIT 4.70588
53 4MIG G3F 4.8048
54 4J51 N75 4.90798
55 1IXI 2HP 4.98442
56 2V7B BEZ 5.10397
57 2GND MAN MMA 5.15873
58 2PHW MAN MAN 5.15873
59 2PHF MAN MAN 5.15873
60 2PHR MAN MAN 5.15873
61 1Q8P MAN MMA 5.15873
62 2PHR MAN MAN BMA MAN 5.15873
63 3AI3 SOE 5.32319
64 4ISS TAR 5.40541
65 1GXS BEZ 5.92593
66 2BQP GLC 5.98291
67 3UCL NAP 6.00601
68 1T9D P22 6.00601
69 4M52 FAD 6.00601
70 4M52 M52 6.00601
71 2UVO NDG 6.43275
72 2UVO NAG 6.43275
73 4CM9 YGL 6.59722
74 4EI7 GDP 6.60661
75 4M00 SUC 6.60661
76 1LES GLC FRU 7.18232
77 3CTY FAD 7.50751
78 1NAA 6FA 7.50751
79 1NAA ABL 7.50751
80 5UAV TFB 7.50751
81 5UAV NDP 7.50751
82 2QX0 PH2 7.54717
83 1PZG A3D 7.55287
84 1GET NAP 7.80781
85 3CB2 GDP 8.10811
86 3N29 GOL 8.10811
87 2VQ5 HBA 8.45771
88 6GAS FAD 8.45921
89 1W5F G2P 9.00901
90 4DXD GDP 9.09091
91 3ITJ CIT 9.30931
92 1RQ2 CIT 9.42408
93 1OYY AGS 9.60961
94 3ZXE PGZ 9.77444
95 5XFI NAG NAG BMA MAN MAN NAG GAL NAG 9.80392
96 6GAR FAD 10.0287
97 5V6F MAN BMA MAN 10.1449
98 5J60 FAD 10.3125
99 5NM7 GLY 10.5263
100 3R7F CP 10.5263
101 2R75 01G 10.9467
102 2CHT TSA 11.0236
103 5XDT MB3 11.6883
104 5XDT GDP 11.6883
105 5AEW BNL 12.234
106 1OFU GDP 13.4454
107 6CED EYA 14.0187
108 2RHO GDP 14.4615
109 2RHO GSP 14.4615
110 1VBO MAN MAN MAN 15.4362
111 1VBO MAN 15.4362
112 2VAP GDP 16.2088
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