Receptor
PDB id Resolution Class Description Source Keywords
3omg 1.85 Å EC: 7.-.-.- STRUCTURE OF HUMAN SND1 EXTENDED TUDOR DOMAIN IN COMPLEX WIT SYMMETRICALLY DIMETHYLATED ARGININE PIWIL1 PEPTIDE R14ME2S HOMO SAPIENS STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1 TDRD11PIWIL1/MIWI STRUCTURAL GENOMICS CONSORTIUM SGC P100 EXTETUDOR DOMAIN TRANSCRIPTION REGULATION SYMMETRICALLY DIMETARGININE PEPTIDES DERIVED FROM PIWIL1 TRANSCRIPTION
Ref.: STRUCTURAL BASIS FOR RECOGNITION OF ARGININE METHYL PROTEINS BY THE EXTENDED TUDOR DOMAIN. PROC.NATL.ACAD.SCI.USA V. 107 18398 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ARG GLY ARG ALA 2MR GLY GLN GLU C:2;
D:3;
 Valid;
Valid;
 none;
none;
 submit data
599.718 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3OMC 1.77 Å EC: 7.-.-.- STRUCTURE OF HUMAN SND1 EXTENDED TUDOR DOMAIN IN COMPLEX WIT SYMMETRICALLY DIMETHYLATED ARGININE PIWIL1 PEPTIDE R4ME2S HOMO SAPIENS STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1 TDRD11PIWIL1/MIWI STRUCTURAL GENOMICS CONSORTIUM SGC P100 EXTETUDOR DOMAIN TRANSCRIPTION REGULATION SYMMETRICALLY DIMETARGININE PEPTIDES DERIVED FROM PIWIL1 TRANSCRIPTION REGULA
Ref.: STRUCTURAL BASIS FOR RECOGNITION OF ARGININE METHYL PROTEINS BY THE EXTENDED TUDOR DOMAIN. PROC.NATL.ACAD.SCI.USA V. 107 18398 2010
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 319 families.
1 3OMC - THR GLY 2MR ALA ARG ALA ARG ALA n/a n/a
2 3OMG - ARG GLY ARG ALA 2MR GLY GLN GLU n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 271 families.
1 3OMC - THR GLY 2MR ALA ARG ALA ARG ALA n/a n/a
2 3OMG - ARG GLY ARG ALA 2MR GLY GLN GLU n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 223 families.
1 3OMC - THR GLY 2MR ALA ARG ALA ARG ALA n/a n/a
2 3OMG - ARG GLY ARG ALA 2MR GLY GLN GLU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ARG GLY ARG ALA 2MR GLY GLN GLU; Similar ligands found: 5
No: Ligand ECFP6 Tc MDL keys Tc
1 ARG GLY ARG ALA 2MR GLY GLN GLU 1 1
2 ARG ASP ARG ALA ALA LYS LEU 0.418182 0.803922
3 GLU ARG GLY SER GLY ARG 0.415929 0.792453
4 ARG ARG ARG ARG ARG ARG ARG ARG 0.414141 0.869565
5 ARG ARG ARG ARG ARG ARG ARG ARG ARG ARG 0.414141 0.869565
Similar Ligands (3D)
Ligand no: 1; Ligand: ARG GLY ARG ALA 2MR GLY GLN GLU; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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