Receptor
PDB id Resolution Class Description Source Keywords
4BJ0 1 Å EC: 3.2.1.8 XYLOGLUCAN BINDING MODULE (CBM4-2 X2-L110F) IN COMPLEX WITH XYLOSES RHODOTHERMUS MARINUS HYDROLASE XYLOGLUCAN CBM4-2 X2 L110F CH-PI INTERACTION ENGINEERED CONSTRUCT
Ref.: CARBOHYDRATE BINDING MODULE RECOGNITION OF XYLOGLUC DEFINED BY POLAR CONTACTS WITH BRANCHING XYLOSES AN INTERACTIONS. PROTEINS V. 82 3466 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:1167;
 Part of Protein;
 none;
 submit data
40.078 Ca [Ca+2...
BGC BGC XYS BGC XYS XYS B:1;
 Valid;
 none;
 Ka = 151000 M^-1
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2Y64 1.4 Å EC: 3.2.1.8 XYLOPENTAOSE BINDING MUTATED (X-2 L110F) CBM4-2 CARBOHYDRATE MODULE FROM A THERMOSTABLE RHODOTHERMUS MARINUS XYLANASE RHODOTHERMUS MARINUS HYDROLASE
Ref.: STRUCTURAL BASIS FOR CARBOHYDRATE-BINDING SPECIFICI COMPARATIVE ASSESSMENT OF TWO ENGINEERED CARBOHYDRATE-BINDING MODULES. GLYCOBIOLOGY V. 22 948 2012
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 34 families.
1 2Y64 Kd = 1.68 uM XYP XYP XYP XYP XYP n/a n/a
2 2Y6K - XYP XYP XYP XYP n/a n/a
3 4BJ0 Ka = 151000 M^-1 BGC BGC XYS BGC XYS XYS n/a n/a
4 2Y6L Kd = 43 uM XYP XYP XYP XYP XYP n/a n/a
5 2Y6G Kd ~ 1 mM BGC BGC BGC n/a n/a
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 32 families.
1 2Y64 Kd = 1.68 uM XYP XYP XYP XYP XYP n/a n/a
2 2Y6K - XYP XYP XYP XYP n/a n/a
3 4BJ0 Ka = 151000 M^-1 BGC BGC XYS BGC XYS XYS n/a n/a
4 2Y6L Kd = 43 uM XYP XYP XYP XYP XYP n/a n/a
5 2Y6G Kd ~ 1 mM BGC BGC BGC n/a n/a
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 2Y64 Kd = 1.68 uM XYP XYP XYP XYP XYP n/a n/a
2 2Y6K - XYP XYP XYP XYP n/a n/a
3 4BJ0 Ka = 151000 M^-1 BGC BGC XYS BGC XYS XYS n/a n/a
4 2Y6L Kd = 43 uM XYP XYP XYP XYP XYP n/a n/a
5 2Y6G Kd ~ 1 mM BGC BGC BGC n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BGC BGC XYS BGC XYS XYS; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BGC BGC XYS BGC XYS XYS; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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