Receptor
PDB id Resolution Class Description Source Keywords
4IDN 2.25 Å EC: 3.6.5.- HUMAN ATLASTIN-1 1-446, C-HIS6, GPPNHP HOMO SAPIENS GTPASE GTP/GDP BINDING HYDROLASE
Ref.: STRUCTURAL BASIS FOR CONFORMATIONAL SWITCHING AND G LOADING OF THE LARGE G PROTEIN ATLASTIN. EMBO J. V. 32 369 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:502;
A:502;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
GNP A:501;
B:501;
Valid;
Valid;
none;
none;
Kd = 5.77 uM
522.196 C10 H17 N6 O13 P3 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4IDN 2.25 Å EC: 3.6.5.- HUMAN ATLASTIN-1 1-446, C-HIS6, GPPNHP HOMO SAPIENS GTPASE GTP/GDP BINDING HYDROLASE
Ref.: STRUCTURAL BASIS FOR CONFORMATIONAL SWITCHING AND G LOADING OF THE LARGE G PROTEIN ATLASTIN. EMBO J. V. 32 369 2013
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 4IDQ - GDP ALF n/a n/a
3 4IDO - GDP ALF n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 4IDQ - GDP ALF n/a n/a
4 4IDO - GDP ALF n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 4IDQ - GDP ALF n/a n/a
4 4IDO - GDP ALF n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 GDP 0.839506 0.973684
3 GP3 0.82716 0.948718
4 GTP 0.809524 0.973684
5 GNH 0.807229 0.986842
6 G1R 0.77907 0.961039
7 GCP 0.77907 0.948718
8 GSP 0.770115 0.925
9 5GP 0.756098 0.960526
10 G 0.756098 0.960526
11 G2R 0.747253 0.936709
12 GMV 0.747126 0.948718
13 GAV 0.714286 0.936709
14 GP2 0.712644 0.936709
15 G2P 0.711111 0.936709
16 Y9Z 0.708333 0.880952
17 GDP MG 0.696629 0.9
18 GDD 0.690722 0.936709
19 GDC 0.690722 0.936709
20 GKE 0.690722 0.936709
21 GDP BEF 0.688889 0.878049
22 G5P 0.686869 0.948718
23 GPG 0.684211 0.936709
24 GTG 0.683673 0.91358
25 GFB 0.683673 0.936709
26 GDR 0.683673 0.936709
27 JB2 0.68 0.936709
28 GKD 0.68 0.936709
29 G3A 0.676768 0.948718
30 6CK 0.676768 0.91358
31 GDX 0.673267 0.948718
32 ALF 5GP 0.67033 0.86747
33 GTP MG 0.666667 0.9
34 BEF GDP 0.666667 0.86747
35 YGP 0.663265 0.879518
36 GCP G 0.659574 0.911392
37 GPD 0.656863 0.902439
38 GDP AF3 0.645833 0.86747
39 GDP ALF 0.645833 0.86747
40 JB3 0.641509 0.925
41 DBG 0.640351 0.974359
42 G3D 0.638298 0.960526
43 G4P 0.625 0.960526
44 GMP 0.621951 0.857143
45 NGD 0.62037 0.936709
46 GGM 0.618182 0.925926
47 0O2 0.616162 0.960526
48 G G 0.61 0.911392
49 2MD 0.603604 0.870588
50 CAG 0.60177 0.904762
51 U2G 0.590909 0.91358
52 FEG 0.590909 0.858824
53 GDP 7MG 0.590476 0.888889
54 MGD 0.587719 0.870588
55 ZGP 0.585586 0.848837
56 CG2 0.580357 0.91358
57 ANP 0.568421 0.922078
58 PGD 0.567797 0.902439
59 MD1 0.567797 0.870588
60 3GP 0.56044 0.922078
61 TPG 0.558333 0.822222
62 GH3 0.55 0.948052
63 FE9 0.546219 0.778947
64 GPX 0.539216 0.922078
65 G4M 0.539062 0.860465
66 DGI 0.536082 0.9
67 BGO 0.535088 0.901235
68 IDP 0.53125 0.947368
69 DGT 0.53 0.9
70 2GP 0.526882 0.935065
71 G1R G1R 0.520325 0.901235
72 I2C FE2 CMO CMO 0.516667 0.811111
73 U A G G 0.512605 0.911392
74 AGO 0.504202 0.91358
75 G A A A 0.504202 0.9
76 P2G 0.5 0.860759
77 G1G 0.5 0.902439
78 MGP 0.49505 0.936709
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 DGP 0.474227 0.8875
83 DG 0.474227 0.8875
84 G G U 0.473684 0.911392
85 IMP 0.463918 0.934211
86 G2Q 0.462963 0.936709
87 GPC 0.459677 0.858824
88 G C 0.459016 0.878049
89 GTA 0.448276 0.91358
90 G7M 0.444444 0.924051
91 MAP 0.439252 0.898734
92 G G G RPC 0.435484 0.853659
93 B4P 0.434343 0.871795
94 AP5 0.434343 0.871795
95 ADP 0.434343 0.896104
96 A2D 0.43299 0.871795
97 U G A 0.431655 0.86747
98 G G G C 0.426357 0.890244
99 SGP 0.425743 0.807229
100 AU1 0.425743 0.922078
101 BA3 0.424242 0.871795
102 35G 0.423077 0.909091
103 PCG 0.423077 0.909091
104 A G C C 0.423077 0.888889
105 C2E 0.423077 0.897436
106 APC G U 0.421875 0.864198
107 ATP 0.421569 0.896104
108 ACQ 0.419048 0.873418
109 5GP 5GP 0.419048 0.860759
110 AQP 0.417476 0.896104
111 5FA 0.417476 0.896104
112 01G 0.417391 0.880952
113 UNP 0.415842 0.810127
114 AN2 0.415842 0.909091
115 6AD 0.415094 0.821429
116 ITT 0.411765 0.846154
117 M33 0.411765 0.860759
118 G C C C 0.410448 0.901235
119 G U34 0.408 0.86747
120 ACP 0.407767 0.873418
121 APR 0.403846 0.871795
122 AR6 0.403846 0.871795
123 DG DG 0.403509 0.845238
124 A4P 0.403226 0.848837
125 UCG 0.402985 0.888889
126 AD9 0.4 0.873418
127 SAP 0.4 0.851852
128 AGS 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4IDN; Ligand: GNP; Similar sites found: 480
This union binding pocket(no: 1) in the query (biounit: 4idn.bio1) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2XT3 ADP 0.00001474 0.41124 1.16279
2 4NCN GTP 0.00002404 0.50245 1.31291
3 1FP6 ADP 0.0004301 0.42302 1.38408
4 1F6B GDP 0.000162 0.42675 1.51515
5 4IEE AGS 0.001273 0.46461 1.53173
6 2ZE7 AMP 0.006602 0.40337 1.58103
7 2ZE7 DST 0.007164 0.40337 1.58103
8 3WXM GTP 0.00003688 0.49892 1.59574
9 4GOX A3P 0.001075 0.43325 1.59744
10 1NJF ADP 0.0004139 0.4367 1.6
11 1NJF AGS 0.0008404 0.4358 1.6
12 5FTB ANP 0.0004267 0.47115 1.61663
13 5FHD ADP ALF 0.0004731 0.45035 1.61663
14 5JCP GDP ALF 0.000226 0.47348 1.67064
15 2C04 GCP 0.004521 0.40114 1.6835
16 1G3Q ADP 0.001096 0.45705 1.68776
17 3BFX A3P 0.002508 0.42321 1.68919
18 3LRE ADP 0.00000611 0.60534 1.69014
19 2QEN ADP 0.0002301 0.44041 1.71429
20 4TMZ GSP 0.00002312 0.50316 1.73913
21 1AZT GSP 0.00005092 0.4987 1.74129
22 3Q85 GNP 0.00007375 0.42558 1.75055
23 5J1J ANP 0.0005487 0.4455 1.75439
24 4AG5 ADP 0.00003726 0.55504 1.78571
25 1IN4 ADP 0.0006168 0.42933 1.79641
26 1NST A3P 0.0021 0.40446 1.84615
27 3ZQ6 ADP ALF 0.0009727 0.44037 1.85185
28 3EC1 GDP 0.0004134 0.41343 1.89702
29 1HTW ADP 0.0003021 0.41798 1.89873
30 3DEF GDP 0.00002292 0.47087 1.9084
31 1TQ4 GDP 0.0005999 0.43628 1.93705
32 3WY9 GDP 0.0001057 0.51859 1.96937
33 1WDT GTP 0.00002652 0.48402 1.96937
34 1IHU ADP 0.002059 0.4214 1.96937
35 1IHU AF3 0.002098 0.41922 1.96937
36 3WYA GDP 0.0001429 0.41865 1.96937
37 1X6V ADP 0.006703 0.40748 1.96937
38 4YS0 ADP 0.006938 0.40742 1.96937
39 2AWN ADP 0.000002376 0.40195 2.09974
40 1PUJ GNP 0.00003922 0.46088 2.12766
41 2ZEJ GDP 0.002309 0.42437 2.17391
42 3EWA ANP 0.000179 0.41639 2.17391
43 2J5V PCA 0.04795 0.40277 2.17984
44 2FAH GDP 0.0008485 0.41485 2.18818
45 1NHX PEP 0.01421 0.40757 2.18818
46 1NHX FTB 0.01487 0.40757 2.18818
47 1W0J ADP 0.000241 0.43054 2.20588
48 1W0J ADP BEF 0.0007484 0.42706 2.20588
49 4NZ6 DGL 0.01914 0.41167 2.23642
50 1MKY GDP 0.00006811 0.4274 2.2779
51 5GOE GDP 0.0002802 0.47964 2.36967
52 4M9Q GNP 0.0000254 0.49914 2.407
53 5FG3 GDP 0.00009517 0.4185 2.407
54 2BCG GDP 0.0004753 0.4546 2.42826
55 1KK1 GNP 0.0001154 0.41456 2.43902
56 3DZD ADP 0.00178 0.40052 2.44565
57 4HSE ADP 0.00007053 0.43859 2.51889
58 1SVK ALF GDP 0.00004102 0.50453 2.54958
59 4ZNL BEF ADP 0.0001464 0.42351 2.55474
60 3ZFD ANP 0.00001129 0.47551 2.5641
61 4OI4 ATP 0.0004604 0.44869 2.6087
62 3NHB ADP 0.00006539 0.40377 2.61438
63 3P4X ADP 0.0002605 0.40323 2.66344
64 5L3V GDP 0.0003697 0.41845 2.67559
65 4LYA ATP 0.0001917 0.4255 2.68336
66 1YZN GNP 0.00003382 0.46083 2.7027
67 1Y3A GDP 0.0008435 0.43766 2.73556
68 4MKF AP5 0.005117 0.42569 2.76498
69 4MKG AP5 0.005862 0.422 2.76498
70 4DKX GDP 0.00008868 0.51548 2.77778
71 1Z0F GDP 0.0001484 0.42363 2.7933
72 4R43 GDP 0.0003659 0.4855 2.84464
73 4WZA ACP 0.00163 0.4635 2.84464
74 4WZA ADP 0.00163 0.4635 2.84464
75 2VF7 ADP 0.0005775 0.40495 2.84464
76 1BH2 GSP 0.0000558 0.49699 2.85714
77 4Q1A 2XZ 0.02206 0.43974 2.85714
78 4Q1A UDP 0.02206 0.43974 2.85714
79 3FWY ADP 0.000558 0.42551 2.86624
80 3BOS CDP 0.00002546 0.44649 2.89256
81 4FCW ADP 0.0004282 0.41444 2.89389
82 2RGX AP5 0.005731 0.42447 2.91262
83 1D2N ANP 0.001324 0.42198 2.94118
84 5GJC ATP 0.0002672 0.41029 2.94118
85 2IXE ATP 0.002328 0.41734 2.95203
86 2CBZ ATP 0.000009254 0.601 2.95359
87 2EW1 GNP 0.00002671 0.50053 2.98507
88 1WF3 GNP 0.0000003583 0.58666 2.99003
89 2XTN GTP 0.0000008534 0.56323 2.99145
90 3UIE ANP 0.0006797 0.40916 3
91 2QG6 NMN 0.002333 0.42573 3.01508
92 2F9L GDP 0.00113 0.42327 3.01508
93 4QOS ADP 0.0005339 0.46664 3.01887
94 2GWH A3P 0.007463 0.40601 3.02013
95 2ZPT A3P 0.02293 0.40602 3.05085
96 5TSH ANP 0.000107 0.42053 3.06346
97 1OS1 PYR 0.01043 0.40051 3.06346
98 4YDS ATP 0.00008936 0.52965 3.07018
99 4DCT GDP 0.00008537 0.50975 3.07018
100 1JJ7 ADP 0.00002062 0.57583 3.07692
101 3Q9L ATP 0.001232 0.44079 3.07692
102 2WOJ ADP ALF 0.000928 0.44124 3.10734
103 3ZS9 ADP ALF 0.000994 0.43997 3.10734
104 4RD0 GDP 0.00007013 0.48076 3.13253
105 1OIV GDP 0.001094 0.43651 3.14136
106 1G7S GDP 0.00034 0.48123 3.28228
107 1JWY ADP 0.00001155 0.46566 3.28228
108 1JWY GDP 0.0004933 0.42042 3.28228
109 2WKQ GTP 0.00007082 0.48278 3.31325
110 5JCZ GDP 0.0000936 0.48526 3.35196
111 2Y8E GNP 0.0000269 0.47206 3.35196
112 2OFW ADX 0.009882 0.4108 3.36538
113 5IFS ADP 0.0004301 0.41667 3.37553
114 1XTQ GDP 0.0003811 0.45213 3.38983
115 3IO3 ADP 0.02082 0.40001 3.44828
116 3B7G ANP 0.0005436 0.40839 3.47826
117 1YQT ADP 0.00004109 0.40635 3.50109
118 3QKT ANP 0.00213 0.42254 3.53982
119 2ODE ALF GDP 0.00003912 0.50363 3.5461
120 3PQC GDP 0.00002082 0.46411 3.58974
121 5L3W GDP 0.001141 0.40261 3.59477
122 1FNN ADP 0.0008936 0.4233 3.59897
123 3TK1 GDP 0.00007133 0.41366 3.63636
124 4YMU ATP 0.0002118 0.40223 3.63636
125 1GOJ ADP 0.000005642 0.40991 3.66197
126 1OIX GDP 0.0001044 0.47976 3.66492
127 1Z06 GNP 0.00002444 0.50436 3.7037
128 3PCR GTP 0.00002857 0.4993 3.7037
129 5L3S GNP 0.0002681 0.46051 3.71622
130 5HR5 ADP 0.00009891 0.45333 3.71991
131 1U0J ADP 0.0003691 0.40142 3.74532
132 2J0V GDP 0.0001593 0.42391 3.77358
133 2PL3 ADP 0.0008283 0.47393 3.81356
134 4D81 ADP 0.0004298 0.42221 3.88693
135 5IRN ADP 0.0003641 0.4254 3.93873
136 1R6B ADP 0.0002016 0.4232 3.93873
137 1UKZ ADP 0.009463 0.4061 3.94089
138 2ZR9 DTP 0.000111 0.42219 4.01146
139 3TNF GNP 0.00003862 0.502 4.02299
140 4LHW GNP 0.0000599 0.45969 4.02299
141 3CPJ GDP 0.000315 0.42765 4.03587
142 3FYH ADP 0.001922 0.42443 4.03727
143 1H65 GDP 0.0002559 0.45733 4.07407
144 2ZFI ADP 0.00005772 0.43757 4.09836
145 5CK5 GDP 0.00005752 0.42167 4.11392
146 3B5J 12D 0.000307 0.50216 4.11523
147 1Z08 GNP 0.001589 0.42612 4.11765
148 4LC1 GDP 0.00009643 0.42378 4.1543
149 4ZKD GDP 0.00008349 0.48581 4.15755
150 2QZ4 ADP 0.0003343 0.41858 4.19847
151 1OXV ANP 0.0001915 0.40482 4.24929
152 3QBT GNP 0.00003012 0.46989 4.28571
153 1D5C GDP 0.0001501 0.44706 4.32099
154 2DPY ADP 0.0001962 0.51213 4.3379
155 3DC4 ADP 0.00001419 0.43389 4.36047
156 2FFQ GSP 0.00003567 0.50154 4.37637
157 3E70 GDP 0.0005517 0.40659 4.37637
158 4OHY ANP 0.0002797 0.44072 4.40835
159 4R98 GNH 0.0001301 0.42036 4.42804
160 1E96 GTP 0.00005855 0.49041 4.4335
161 3VX3 ADP 0.0006579 0.42989 4.43548
162 5X40 ACP 0.0008108 0.43838 4.45205
163 2PEZ DAT 0.008627 0.40664 4.46927
164 2PEZ GGZ 0.008627 0.40664 4.46927
165 3RLF ANP 0.001063 0.43344 4.47368
166 4WZ6 ATP 0.0001172 0.5291 4.48276
167 4A4Z ANP 0.0008421 0.46787 4.51354
168 4BAS GNP 0.00003059 0.49578 4.52261
169 3T1O GDP 0.0003617 0.41956 4.54545
170 1JI0 ATP 0.00008238 0.53146 4.58333
171 5N69 ADP 0.00002446 0.46952 4.59519
172 2HT6 GDP 0.00005608 0.421 4.5977
173 1SKQ GDP 0.00007209 0.41962 4.5977
174 3T5G GDP 0.0001238 0.43607 4.60526
175 1NF3 GNP 0.00006514 0.48844 4.61538
176 5M7P ADP 0.0008511 0.42328 4.62555
177 1UPT GTP 0.00003194 0.49499 4.67836
178 5EE5 GTP 0.00003447 0.49362 4.67836
179 1YZQ GNP 0.00003665 0.50104 4.70588
180 1A4R GDP 0.0004904 0.43396 4.71204
181 1A4R GNH 0.0003557 0.43288 4.71204
182 4RZ3 ADP 0.0008512 0.42191 4.74576
183 1Z2A GDP 0.0001411 0.46005 4.7619
184 2XTZ GSP 0.00004567 0.49498 4.80226
185 4PFO ADP 0.000187 0.46903 4.814
186 1R4A GNP 0.0000436 0.49376 4.84848
187 4J0Q GDP 0.00005807 0.42216 4.84988
188 1JJV ATP 0.0001005 0.40002 4.85437
189 5DI3 GNP 0.00004342 0.48943 4.86486
190 4WOP CTP 0.001622 0.41859 4.88889
191 2GDJ ANP 0.0002561 0.41466 4.92424
192 4YC7 GNP 0.0001094 0.47271 4.97238
193 3A4M ADP 0.00005416 0.41422 5
194 5I0H ADP BEF 0.00002845 0.49017 5.03282
195 3EZ2 ADP 0.002115 0.45358 5.03282
196 1Z6T ADP 0.0007242 0.42001 5.03282
197 2Z5F A3P 0.00347 0.40549 5.03356
198 4NU0 AP5 0.00379 0.4283 5.06912
199 1S3G AP5 0.004635 0.42657 5.06912
200 3FB4 AP5 0.005461 0.42338 5.09259
201 2JLR ANP 0.001073 0.40918 5.09978
202 1V8K ANP 0.00005261 0.43974 5.12195
203 2FH5 GTP 0.00002568 0.49227 5.14019
204 3NKV GNP 0.00003976 0.49753 5.14286
205 2A5J GDP 0.0002072 0.48572 5.2356
206 1VG8 GNP 0.00005802 0.49254 5.31401
207 3U6B GDP 0.0000541 0.53313 5.32995
208 5JBQ GDP 0.00009057 0.42452 5.32995
209 4P3Y GDP 0.00005938 0.42223 5.32995
210 4G5G GDP 0.0001176 0.42159 5.32995
211 3U6K GDP 0.0001642 0.41865 5.32995
212 2BVN GNP 0.00007795 0.45139 5.34351
213 1D8T GDP 0.0001003 0.42335 5.34351
214 1ZJ6 G3D 0.000196 0.4926 5.34759
215 4LPS GDP 0.0008184 0.40081 5.3719
216 5G41 AP5 0.007047 0.42325 5.38117
217 1RYH GNP 0.0001042 0.43885 5.41872
218 3GJ4 GDP 0.0001507 0.41833 5.42986
219 3GJ5 GDP 0.0002654 0.41696 5.42986
220 4YLG GDP 0.0002936 0.43653 5.47046
221 1ZIN AP5 0.004927 0.42539 5.52995
222 1BG2 ADP 0.000004478 0.41158 5.53846
223 4TTQ ATP 0.00009419 0.42748 5.5814
224 4C4P GNP 0.00009132 0.48415 5.60748
225 4U5X GNP 0.0001491 0.45401 5.61798
226 3REF GDP 0.0002798 0.45571 5.6701
227 1QF9 ADP 0.009006 0.41047 5.6701
228 1QF9 ALF 0.009006 0.41047 5.6701
229 1QF9 C5P 0.009006 0.41047 5.6701
230 2PZE ATP 0.00003122 0.40088 5.67686
231 1VG0 GDP 0.0005023 0.42064 5.68928
232 1YTM ATP 0.002394 0.42037 5.68928
233 1DS6 GDP 0.0001412 0.41909 5.72917
234 1I4D GDP 0.0001691 0.40877 5.72917
235 1Z0A GDP 0.0002818 0.42186 5.74713
236 1F9V ADP 0.00004935 0.40889 5.76369
237 1ZCB GDP 0.0001311 0.47558 5.80111
238 4GOJ GNP 0.00002043 0.50309 5.82011
239 5BQ5 ADP BEF 0.0004506 0.47006 5.82011
240 1W5T ANP 0.003572 0.40487 5.82524
241 1GWN GTP 0.00007964 0.47227 5.85366
242 3GJ0 GDP 0.0001962 0.49868 5.88235
243 3SBD GNP 0.0000693 0.48731 5.88235
244 2FNA ADP 0.0002814 0.45561 5.88235
245 3GJ3 GDP 0.0001834 0.41581 5.88235
246 1MH1 GNP 0.0001582 0.47398 5.91398
247 4KAX GTP 0.00002203 0.50172 5.91716
248 4DID GDP 0.0002213 0.41896 5.92105
249 3M1I GTP 0.00005871 0.49232 5.93607
250 1VG1 GDP 0.0002019 0.42001 5.94595
251 1VG9 GDP 0.0002941 0.41653 5.94595
252 1G4U GDP 0.0009508 0.44152 5.97826
253 2NGR GDP 0.00003678 0.44663 5.98291
254 1T5C ADP 0.000004209 0.41369 6.01719
255 3GJX GTP 0.00008774 0.48489 6.01852
256 5BXQ GDP 0.0003357 0.41379 6.01852
257 1FZQ GDP 0.00007086 0.42912 6.07735
258 1SVI GDP 0.00006128 0.42266 6.15385
259 3VMF GTP 0.00002571 0.50556 6.16622
260 2FJU GSP 0.00004585 0.4814 6.17978
261 3CX8 GSP 0.00004368 0.50157 6.21302
262 1S8F GDP 0.0008685 0.44412 6.21469
263 2HV8 GTP 0.0001006 0.48045 6.25
264 1HE1 GDP 0.0002993 0.45881 6.25
265 1HE1 AF3 0.004133 0.44421 6.25
266 2HCJ GDP 0.00005956 0.42322 6.26866
267 4CVN ADP 0.00008767 0.53007 6.28272
268 1XX6 ADP 0.00005622 0.40412 6.28272
269 5DHF GNP 0.00006142 0.49149 6.29371
270 5UWI GNP 0.00006562 0.49026 6.29371
271 5UWP GNP 0.00007295 0.49018 6.29371
272 5DIF GNP 0.00006601 0.49015 6.29371
273 5UWR GNP 0.00006797 0.48961 6.29371
274 5UWT GNP 0.00006962 0.48917 6.29371
275 5DI9 GNP 0.00008195 0.48801 6.29371
276 5UWW GNP 0.00008897 0.48463 6.29371
277 5UWU GNP 0.00008915 0.48459 6.29371
278 5UWS GNP 0.0001072 0.48302 6.29371
279 5UWH GNP 0.00006183 0.45204 6.29371
280 5UWJ GNP 0.00007146 0.44998 6.29371
281 5UWQ GNP 0.00007941 0.44833 6.29371
282 4LX0 BEF GDP 0.00005801 0.49254 6.32318
283 4B47 GDP 0.00007048 0.42132 6.33609
284 2BIF ANP 0.0008656 0.45163 6.34573
285 2BIF SIN 0.001511 0.45163 6.34573
286 2GJ8 ALF GDP 0.000001226 0.51427 6.39535
287 4HAT GNP 0.00006883 0.49126 6.42857
288 2W58 ADP 0.000001086 0.42246 6.43564
289 1YRB GDP 0.0003156 0.42821 6.48855
290 1M7B GTP 0.00006781 0.47497 6.52174
291 1ZUI SKM 0.001001 0.45152 6.54762
292 1LVG ADP 0.00005074 0.41807 6.56566
293 2VVG ADP 0.00000835 0.40692 6.57143
294 3T12 GDP ALF 0.00009363 0.47553 6.61765
295 3Q72 GNP 0.00003277 0.42822 6.62651
296 1SVM ATP 0.008555 0.42117 6.6313
297 1Z83 AP5 0.005805 0.41541 6.63265
298 1R0X ATP 0.000171 0.40217 6.64336
299 5H56 TYD 0.003052 0.42364 6.66667
300 5H56 ADP 0.003052 0.42364 6.66667
301 5K5Z ANP 0.001406 0.43016 6.6879
302 2VB6 ADP BEF 0.0001438 0.46988 6.71141
303 4FRZ ADP 0.00003499 0.41218 6.73575
304 4PC3 GDP 0.0008367 0.4133 6.73759
305 1IBR GNP 0.00006035 0.49181 6.78337
306 2IS6 ADP 0.0001052 0.42081 6.78337
307 1DAR GDP 0.0003448 0.40793 6.78337
308 5TIV A3P 0.01751 0.40344 6.78337
309 4PPF FLC 0.000007575 0.59755 6.85714
310 1GRN GDP 0.0001288 0.44942 6.89655
311 2GCO GNP 0.0001578 0.44575 6.96517
312 2GCN GDP 0.001289 0.42805 6.96517
313 3RWO GDP 0.0006349 0.44653 7.02703
314 1G16 GDP 0.001341 0.42734 7.05882
315 2J59 GTP 0.00002285 0.50337 7.22892
316 1O3Y GTP 0.00002327 0.50304 7.22892
317 1D2E GDP 0.0002511 0.43096 7.30479
318 4NON GDP 0.001107 0.4396 7.30769
319 3AB3 GDP 0.0006248 0.43566 7.31707
320 1RE0 GDP 0.0001062 0.41573 7.31707
321 2X77 GDP 0.0001788 0.4945 7.40741
322 1TAD GDP 0.00007357 0.49183 7.40741
323 1TAD ALF 0.00007357 0.49183 7.40741
324 4DSU GDP 0.0006125 0.44893 7.40741
325 1KSH GDP 0.00002938 0.48981 7.52688
326 4HI0 GDP 0.001053 0.42614 7.53769
327 4D0N GDP 0.0001125 0.41983 7.56757
328 3CNL GNP 0.00002694 0.43212 7.63359
329 1YVD GNP 0.00003951 0.49765 7.69231
330 2EFE GNH 0.0009116 0.41214 7.73481
331 2CJW GDP 0.0001253 0.50816 7.8125
332 2Y65 ADP 0.000004129 0.4288 7.94521
333 5J1S ATP 0.0009642 0.43707 7.94979
334 3WYF GTP 0.00008215 0.48797 7.98319
335 5TB5 GDP 0.0002482 0.42408 8
336 2KIN ADP 0.000005318 0.40998 8
337 5MVR ADP 0.0002482 0.41735 8.02469
338 2C5L GTP 0.00004372 0.49778 8.09249
339 2RCN GDP 0.0001171 0.41954 8.10056
340 5TAR GDP 0.0003435 0.47034 8.10811
341 1F2U ATP 0.002601 0.42216 8.10811
342 1KMQ GNP 0.00006497 0.48435 8.15217
343 1FQK ALF 0.0008238 0.4876 8.16327
344 1FQJ GDP 0.0001397 0.47041 8.16327
345 1FQK GDP 0.0001764 0.45591 8.16327
346 1TU3 GNP 0.00003266 0.50115 8.18713
347 4K81 GTP 0.000056 0.49509 8.18713
348 5XCO GDP 0.0001377 0.44156 8.18713
349 5L3R GCP 0.0002556 0.44174 8.19113
350 2CK3 ADP 0.0008843 0.4368 8.21918
351 2CK3 ANP 0.0008333 0.42531 8.21918
352 4PX9 ADP 0.001647 0.40114 8.21918
353 1R2Q GNP 0.00005291 0.50631 8.23529
354 1NY5 ADP 0.001563 0.40766 8.26873
355 5O2T GSP 0.00004798 0.45626 8.28402
356 4XOI GTP 0.00009032 0.48043 8.33333
357 5SZH GNP 0.00005716 0.49282 8.37438
358 1LFD GNP 0.00002566 0.50559 8.38323
359 1NVV GNP 0.00003179 0.50367 8.43373
360 1NVU GTP 0.00004374 0.49777 8.43373
361 3KUD GDP 0.0001014 0.46761 8.43373
362 1WQ1 GDP 0.0001909 0.46472 8.43373
363 1CLU DBG 0.0007491 0.46429 8.43373
364 1CS4 GSP 0.00003407 0.45413 8.44444
365 1L2T ATP 0.001649 0.42723 8.51064
366 1KO8 6PG 0.0005599 0.43093 8.57143
367 1Y63 ADP 0.0001153 0.42203 8.69565
368 1Z0K GTP 0.0000387 0.4825 8.72093
369 2ZPA ADP 0.0002592 0.44413 8.75274
370 4XVU ATP 0.001031 0.434 8.75576
371 4XTR ATP 0.001032 0.43398 8.75576
372 4XTR ADP 0.001172 0.41884 8.75576
373 5WDR GNP 0.00005225 0.49448 8.77193
374 3W5J GDP 0.00000209 0.43423 8.82353
375 3IIJ ADP 0.0001154 0.42182 8.88889
376 3A1S GDP 0.00003352 0.44815 8.91473
377 2OBM ADP 0.001713 0.47332 8.93372
378 4V03 ADP 0.001173 0.40151 8.94942
379 3FVQ ATP 0.0007983 0.43132 8.97155
380 2G77 GDP 0.00003967 0.46965 9.02439
381 2BME GNP 0.00002504 0.50604 9.13978
382 2A5F GTP 0.00003229 0.49926 9.14286
383 3T34 GDP 0.0001658 0.45743 9.16667
384 1NRJ GTP 0.00002366 0.49351 9.17431
385 3WYG GTP 0.00008805 0.48668 9.21053
386 1P72 ADP 0.007367 0.40964 9.28144
387 1S9D GDP 0.0002103 0.49115 9.35961
388 1MR3 G3D 0.0003086 0.4162 9.39227
389 3COB ADP 0.00002217 0.40862 9.4851
390 1YZG GDP 0.0001545 0.4248 9.49721
391 2D7C GTP 0.00008585 0.48336 9.52381
392 4BQS ADP 0.00868 0.41007 9.65909
393 4BQS K2Q 0.00868 0.41007 9.65909
394 2HF9 GSP 0.001267 0.43381 9.73451
395 2WIC GNP 0.0000171 0.45774 9.73783
396 2Q2Y ADP 0.003717 0.43087 9.80926
397 2Q2Y MKR 0.003805 0.42933 9.80926
398 3N5C GDP 0.0001048 0.42327 9.87654
399 3KTA AP5 0.0007355 0.4135 9.89011
400 3BFV ADP 0.0002271 0.42 9.9631
401 1WA5 GTP 0.00006761 0.42679 10.0656
402 2BEK ATP 0.003141 0.43193 10.1167
403 4D0G GTP 0.00006983 0.48084 10.1449
404 1KAO GDP 0.0001518 0.44792 10.1796
405 3AQ4 GDP 0.0001343 0.42711 10.3261
406 1OW3 GDP 0.0001521 0.44707 10.3306
407 4KFU ACP 0.00002129 0.41992 10.3774
408 3DDC GNP 0.000029 0.50537 10.4294
409 4ZI2 GNP 0.00001719 0.50621 10.5263
410 1EK0 GNP 0.00002842 0.50371 10.5882
411 2WJG GDP 0.00005572 0.43006 10.6383
412 5IRR GSP 0.00002327 0.50072 11.039
413 3TKL GTP 0.00003501 0.49778 11.2245
414 2W2X GSP 0.00003596 0.48573 11.2903
415 4ZG4 VO4 ADP 0.00004476 0.49113 11.5974
416 2IYL GDP 0.0003451 0.40715 11.6197
417 1SQ5 ADP 0.0001441 0.49895 11.6883
418 4ITR GDP 0.0006136 0.4301 11.7089
419 1X1R GDP 0.0002299 0.46706 11.7978
420 3E5H GNP 0.0004483 0.45294 11.7978
421 1M7G ADP 0.003481 0.41975 11.8483
422 1M7G ADX 0.004886 0.41614 11.8483
423 1M7G AV2 0.0001398 0.41392 11.8483
424 2CHG ANP 0.0003274 0.43415 11.9469
425 3SFV GDP 0.001323 0.42212 12.1547
426 1B7T ADP 0.00003037 0.52443 12.1795
427 4V0K GDP 0.002159 0.40605 12.426
428 3GJ8 GDP 0.0002507 0.41772 13.0435
429 3TMK T5A 0.001535 0.43506 13.4259
430 1KK8 BEF ADP 0.00004954 0.50274 13.6691
431 1M2O GNP 0.00002803 0.50397 13.6842
432 1CXZ GSP 0.00006854 0.48117 13.9535
433 3RAB GNP 0.00002467 0.50631 14.7929
434 1G7C 5GP 0.01365 0.40882 14.8936
435 2C77 GNP 0.00002305 0.49354 15.5556
436 2C78 GNP 0.00003596 0.49285 15.5556
437 4QM7 GTP 0.0003333 0.40756 15.7895
438 3BC1 GNP 0.00006053 0.4898 16.4103
439 4E03 ADP 0.0008529 0.40366 16.5049
440 4HDO GNP 0.00004994 0.49532 17.3653
441 4HDQ GNP 0.00006392 0.49075 17.3653
442 1GUA GNP 0.00004346 0.457 17.3653
443 1J2J GTP 0.00002401 0.49089 17.7778
444 4KVG GTP 0.00003113 0.50204 17.8571
445 3X1Z GNP 0.0000414 0.50071 17.9641
446 5UFQ GNP 0.0002279 0.46539 18.0328
447 2WJH FLC 0.0000126 0.47383 18.0723
448 2WJH GDP 0.00005029 0.44504 18.0723
449 5E95 GDP 0.0005643 0.45584 18.5567
450 1ZD9 GDP 0.0004222 0.43712 18.617
451 5KDO GDP 0.0009934 0.43664 18.9189
452 1GOT GDP 0.001754 0.42247 19.1781
453 2V7Q ATP 0.0001683 0.4289 19.697
454 2V7Q ADP 0.0001958 0.41648 19.697
455 5UWO GNP 0.00007361 0.44948 20
456 5IRC GDP 0.0003163 0.42151 20.4301
457 5HPY GDP 0.0001459 0.44762 20.5405
458 3LXR GDP 0.0003407 0.41949 20.5405
459 3MJH GTP 0.0000384 0.46621 20.5882
460 2W83 GTP 0.00002297 0.50328 20.7792
461 2UZI GTP 0.00003381 0.50051 21.1538
462 4XSH GSP 0.000277 0.44356 21.229
463 1TX4 ALF GDP 0.0001349 0.4608 21.4689
464 1KY3 GDP 0.0003061 0.4284 23.0769
465 2A9K GDP 0.0001208 0.45163 23.5294
466 1UAD GNP 0.00005881 0.49033 25.1429
467 1ZC3 GNP 0.00008934 0.48455 25.1429
468 1GP2 GDP 0.001859 0.41471 25.3521
469 3GJ7 GDP 0.0001481 0.50463 25.5102
470 1U8Z GDP 0.001453 0.42776 26.1905
471 3H4S ADP 0.00001465 0.41038 26.6667
472 3QF7 ANP 0.002677 0.40431 28
473 3DOE GTP 0.00002539 0.50145 28.4848
474 3ZIA ADP 0.0002341 0.43135 28.5714
475 3ZIA ATP 0.00009831 0.42907 28.5714
476 2B8W ALF 5GP 0.0000000014 0.6832 33.2317
477 2QN6 GDP 0.00003048 0.54557 33.3333
478 2OM2 GDP 0.001038 0.43583 33.3333
479 1F5N GNP 0.00000000005486 0.74918 34.7921
480 1Z0J GTP 0.00003762 0.50056 35.5932
Pocket No.: 2; Query (leader) PDB : 4IDN; Ligand: GNP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4idn.bio1) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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