Receptor
PDB id Resolution Class Description Source Keywords
4J78 1.48 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/EMP47P COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DOMAIN DILYSINE MOTIF ER RETRIEVAL PROTEINTRANSPORT
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
LYS THR LYS LEU LEU B:1;
 Valid;
 none;
 submit data
603.806 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4J73 1.44 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DILYSINE MOTIF ER RETRIEVAL SIGNAL COATOMERECOGNITION PROTEIN TRANSPORT
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Members (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
70% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
11 4J8B - LEU LYS THR LYS LEU LEU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: LYS THR LYS LEU LEU; Similar ligands found: 106
No: Ligand ECFP6 Tc MDL keys Tc
1 LYS THR LYS LEU LEU 1 1
2 LEU LYS THR LYS LEU LEU 0.805556 1
3 LYS THR LYS 0.676471 0.933333
4 LYS LEU LYS 0.614286 0.888889
5 LYS LEU VAL GLN LEU LEU THR THR THR 0.602273 0.93617
6 LEU THR THR LYS LEU THR ASN THR ASN ILE 0.588889 0.88
7 SER LEU LYS LEU MET THR THR VAL 0.566667 0.862745
8 LYS ASN LEU 0.546667 0.87234
9 LYS LYS LYS ALA 0.534247 0.822222
10 LYS LYS LYS 0.528571 0.8
11 LYS VAL LYS 0.513514 0.866667
12 LYS ILE LYS 0.513158 0.847826
13 ALA GLU LYS ASP GLU LEU 0.511905 0.891304
14 LYS SER LEU LEU GLN GLN LEU LEU THR GLU 0.51 0.9375
15 ALA THR LYS ILE ASP ASN LEU ASP 0.504951 0.88
16 LYS LEU THR PRO LEU CYS VAL THR LEU 0.504587 0.762712
17 HIS GLU GLU LEU ALA LYS LEU 0.494253 0.847826
18 GLY THR LEU SER ASN ARG ALA SER LYS LEU 0.494118 0.934783
19 LYS NLE LYS 0.493333 0.808511
20 CYS THR GLU LEU LYS LEU ASN ASP TYR 0.491071 0.8
21 LYS VAL ILE THR PHE ILE ASP LEU 0.490741 0.862745
22 SER LEU LEU LYS LYS LEU LEU ASP 0.488372 0.916667
23 SER LEU LEU LYS LYS LEU LEU LEU ALA 0.487805 0.934783
24 CYS THR GLU LEU LYS LEU SER ASP TYR 0.486726 0.8
25 ALA ARG THR LYS GLN THR ALA ARG LYS SER 0.482353 0.891304
26 LYS NVA LYS 0.48 0.826087
27 ALA ARG LYS LEU ASP 0.477778 0.788462
28 HIS LYS LEU VAL GLN LEU LEU THR THR THR 0.477064 0.789474
29 LYS ILE LEU GLY PRV VAL PHE PRQ VAL 0.47561 0.770833
30 LYS DAB LYS 0.472973 0.804348
31 ILE LEU ASN ALA MET ILE THR LYS ILE 0.472222 0.830189
32 LEU LEU LEU 0.471429 0.711111
33 LYS GLY PRO PRO ALA ALA LEU THR LEU 0.470085 0.75
34 ACE CSO ARG ALA THR LYS MET LEU 0.468468 0.703125
35 LYS ALA LYS 0.466667 0.822222
36 GLU ALA GLN THR ARG LEU 0.466019 0.826923
37 ILE LEU ALA LYS PHE LEU HIS THR LEU 0.462185 0.775862
38 ACE GLN LEU VAL THR SER LEU 0.461538 0.836735
39 TYR GLN SER LYS LEU 0.459184 0.830189
40 LYS LEU VAL VAL VAL ALA VAL GLY VAL 0.458333 0.847826
41 ACE VAL LYS GLU SER LEU VAL 0.457447 0.914894
42 ARG LEU GLN ARG ARG ARG GLU THR GLN VAL 0.451923 0.830189
43 CYS THR PHE LYS THR LYS THR ASN 0.45098 0.826923
44 LYS MET LYS 0.45 0.77551
45 LYS GLU LYS 0.448718 0.782609
46 LYS SER LYS 0.447368 0.869565
47 LYS LEU VAL VAL VAL GLY ALA VAL GLY VAL 0.443299 0.829787
48 LYS LEU VAL VAL GLY ALA VAL GLY VAL 0.443299 0.829787
49 LYS GLN LYS 0.443038 0.782609
50 ALA LEU LYS ILE ASP ASN LEU ASP 0.441176 0.82
51 THR ARG ARG GLU THR GLN LEU 0.44 0.830189
52 LYS DPP LYS 0.44 0.826087
53 ASN SER THR LEU GLN 0.43956 0.816327
54 ARG ASP ARG ALA ALA LYS LEU 0.43617 0.784314
55 ALA ARG THR GLU LEU TYR ARG SER LEU 0.435897 0.733333
56 ASP GLU LEU GLU ILE LYS ALA TYR 0.434783 0.811321
57 LYS ORN LYS 0.432099 0.765957
58 ALA ASP LYS ILE ASP ASN LEU ASP 0.431373 0.82
59 THR PHE LYS LYS THR ASN 0.43 0.843137
60 LYS ARG LYS 0.428571 0.705882
61 LYS CYS LYS 0.428571 0.804348
62 SER LEU LEU LYS LYS LEU LEU LEU ALA PRO 0.428571 0.728814
63 ARG ARG ALA THR LYS MET NH2 0.428571 0.767857
64 PHE LEU GLU LYS 0.427083 0.795918
65 ALA LEU ALA LEU 0.426667 0.711111
66 ASN LEU LEU GLN LYS LYS 0.425532 0.851064
67 LYS VAL LEU PHE LEU ASP GLY 0.424528 0.8
68 SER LEU LYS ILE ASP ASN LEU ASP 0.424528 0.843137
69 LYS SER LYS THR CMT GER 0.424528 0.833333
70 GLU ALA THR GLN LEU MET ASN 0.423077 0.82
71 LYS ASP LYS 0.423077 0.804348
72 ASN ARG LEU LEU LEU THR GLY 0.42268 0.796296
73 LYS LEU LEU PHE 0.422222 0.770833
74 THR THR ALA PRO SER LEU SER GLY LYS 0.420168 0.737705
75 LYS PRO VAL LEU ARG THR ALA 0.420168 0.714286
76 SER LEU ALA ASN THR VAL ALA THR LEU 0.42 0.795918
77 THR LEU ILE ASP LEU THR GLU LEU ILE 0.42 0.8125
78 THR LYS THR ALA THR ILE ASN ALA SER 0.419048 0.86
79 ASP LEU LYS ILE ASP ASN LEU ASP 0.419048 0.82
80 LYS ASN LYS 0.417722 0.808511
81 GLU ILE ILE ASN PHE GLU LYS LEU 0.417391 0.823529
82 SER GLU LEU GLU ILE LYS ARG TYR 0.416667 0.75
83 LYS GLN TRP LEU VAL TRP LEU PHE LEU 0.416 0.689655
84 GLY GLY LYS LYS LYS TYR LYS LEU 0.415842 0.792453
85 SER ASP LYS ILE ASP ASN LEU ASP 0.415094 0.843137
86 ALA ARG THR LYS GLN THR ALA ARG 0.414141 0.807692
87 ALA THR PRK ALA ALA ARG LYS SER 0.414141 0.857143
88 PHE PRO THR LYS ASP VAL ALA LEU 0.414062 0.737705
89 VAL THR THR ASP ILE GLN VAL LYS VAL 0.411215 0.916667
90 SER LEU TYR LEU THR VAL ALA THR LEU 0.411215 0.735849
91 GLN PHE LYS ASP ASN VAL ILE LEU LEU 0.409836 0.773585
92 SER GLN LEU LYS ASN ASN ALA LYS GLU ILE 0.409091 0.862745
93 PHE LEU SER THR LYS 0.407767 0.86
94 GLY ILE ILE ASN THR LEU 0.406593 0.836735
95 ALA LEU LYS ILE ASP ASN MET ASP 0.405405 0.759259
96 SER ALA LYS ILE ASP ASN LEU ASP 0.405405 0.843137
97 ALA ALA LEU THR ARG ALA 0.40404 0.823529
98 ILE PRO LEU THR GLU GLU ALA GLU LEU 0.403509 0.745763
99 LYS ALA THR LYS MLY 0.402299 0.865385
100 THR LYS CYS VAL VAL MET 0.402062 0.88
101 ACE GLU ALA GLN THR ARG LEU 0.401869 0.811321
102 SER LEU LYS ILE ASP ASN GLU ASP 0.401786 0.843137
103 SER ILE ILE ASN PHE GLU LYS LEU 0.401709 0.811321
104 ALA LYS GLU LYS SER ASP 0.4 0.854167
105 LYS ALA SER VAL GLY 0.4 0.893617
106 SER THR SER ALA 0.4 0.787234
Similar Ligands (3D)
Ligand no: 1; Ligand: LYS THR LYS LEU LEU; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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