Receptor
PDB id Resolution Class Description Source Keywords
4JEJ 1.52 Å EC: 7.-.-.- GGGPS FROM FLAVOBACTERIUM JOHNSONIAE FLAVOBACTERIUM JOHNSONIAE PCRB-LIKE FSPP GGPP TRANSFERASE
Ref.: A COMPREHENSIVE ANALYSIS OF THE GERANYLGERANYLGLYCE PHOSPHATE SYNTHASE ENZYME FAMILY IDENTIFIES NOVEL M AND REVEALS MECHANISMS OF SUBSTRATE SPECIFICITY AND QUATERNARY STRUCTURE ORGANIZATION. MOL.MICROBIOL. V. 92 885 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG A:305;
A:304;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
1GP A:301;
Valid;
none;
submit data
172.074 C3 H9 O6 P C([C@...
PGE A:302;
Invalid;
none;
submit data
150.173 C6 H14 O4 C(COC...
PO4 A:303;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4JEJ 1.52 Å EC: 7.-.-.- GGGPS FROM FLAVOBACTERIUM JOHNSONIAE FLAVOBACTERIUM JOHNSONIAE PCRB-LIKE FSPP GGPP TRANSFERASE
Ref.: A COMPREHENSIVE ANALYSIS OF THE GERANYLGERANYLGLYCE PHOSPHATE SYNTHASE ENZYME FAMILY IDENTIFIES NOVEL M AND REVEALS MECHANISMS OF SUBSTRATE SPECIFICITY AND QUATERNARY STRUCTURE ORGANIZATION. MOL.MICROBIOL. V. 92 885 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 293 families.
1 4JEJ - 1GP C3 H9 O6 P C([C@@H](C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 250 families.
1 4JEJ - 1GP C3 H9 O6 P C([C@@H](C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 4JEJ - 1GP C3 H9 O6 P C([C@@H](C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 1GP; Similar ligands found: 27
No: Ligand ECFP6 Tc MDL keys Tc
1 G3P 1 1
2 1GP 1 1
3 GP9 0.551724 0.90625
4 GPE 0.514286 0.731707
5 M2P 0.5 0.882353
6 GOS 0.5 0.882353
7 LX1 0.484848 0.828571
8 A5P 0.484848 0.911765
9 DX5 0.484848 0.911765
10 LXP 0.484848 0.911765
11 HG3 0.482759 0.90625
12 S6P 0.470588 0.939394
13 DXP 0.457143 0.828571
14 G3H 0.4375 0.848485
15 3PG 0.4375 0.852941
16 D5X 0.432432 0.805556
17 CH5 0.425 0.6
18 EFS 0.423077 0.69697
19 M6R 0.421053 0.756098
20 AGP 0.421053 0.756098
21 GSE 0.414634 0.714286
22 E4P 0.411765 0.878788
23 R52 0.405405 0.828571
24 DG6 0.405405 0.885714
25 TX4 0.405405 0.630435
26 R5P 0.405405 0.828571
27 FQ8 0.4 0.885714
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4JEJ; Ligand: 1GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4jej.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 4JEJ; Ligand: 1GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4jej.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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