Receptor
PDB id Resolution Class Description Source Keywords
4K81 2.4 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE GRB14 RA AND PH DOMAINS IN COMPLEX LOADED H-RAS HOMO SAPIENS ADAPTOR PROTEIN SIGNALING PROTEIN
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF THE ADAPTOR GRB14 WITH ACTIVATED RAS. PLOS ONE V. 8 72473 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:404;
A:401;
E:400;
A:403;
B:201;
A:402;
C:400;
E:401;
C:401;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
GTP H:200;
D:200;
F:200;
B:202;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
523.18 C10 H16 N5 O14 P3 c1nc2...
MG D:201;
H:201;
B:203;
F:201;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4K81 2.4 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE GRB14 RA AND PH DOMAINS IN COMPLEX LOADED H-RAS HOMO SAPIENS ADAPTOR PROTEIN SIGNALING PROTEIN
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF THE ADAPTOR GRB14 WITH ACTIVATED RAS. PLOS ONE V. 8 72473 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 263 families.
1 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 196 families.
1 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 171 families.
1 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GTP; Similar ligands found: 147
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 GNP 0.809524 0.973684
9 GCP 0.797619 0.973684
10 5GP 0.797468 0.986486
11 G 0.797468 0.986486
12 GMV 0.764706 0.973684
13 G2R 0.764045 0.961039
14 G5P 0.755319 0.973684
15 GTG 0.752688 0.936709
16 G2P 0.747126 0.961039
17 G3A 0.744681 0.973684
18 GDD 0.741935 0.961039
19 GKE 0.741935 0.961039
20 GDC 0.741935 0.961039
21 0O2 0.736264 0.986486
22 GP2 0.729412 0.961039
23 6CK 0.726316 0.936709
24 Y9Z 0.723404 0.902439
25 GPG 0.717391 0.961039
26 GFB 0.715789 0.961039
27 GDR 0.715789 0.961039
28 GDP MG 0.712644 0.923077
29 GDP BEF 0.704545 0.9
30 GPD 0.704082 0.925
31 JB2 0.693878 0.961039
32 GKD 0.693878 0.961039
33 GCP G 0.692308 0.935065
34 GDX 0.686869 0.973684
35 ALF 5GP 0.685393 0.888889
36 GTP MG 0.681319 0.923077
37 BEF GDP 0.681319 0.888889
38 GH3 0.681319 0.973333
39 YGP 0.677083 0.901235
40 G3D 0.67033 0.986486
41 GDP AF3 0.659574 0.888889
42 GDP ALF 0.659574 0.888889
43 DGT 0.659341 0.923077
44 GMP 0.658228 0.88
45 G4P 0.655914 0.986486
46 JB3 0.653846 0.948718
47 NGD 0.647619 0.961039
48 CAG 0.642202 0.880952
49 2MD 0.62963 0.891566
50 G G 0.622449 0.935065
51 MGP 0.619565 0.961039
52 U2G 0.616822 0.936709
53 6G0 0.612903 0.961039
54 MGD 0.612613 0.891566
55 TPG 0.608696 0.840909
56 CG2 0.605505 0.936709
57 GDP 7MG 0.601942 0.911392
58 FEG 0.601852 0.879518
59 ZGP 0.59633 0.869048
60 MD1 0.591304 0.891566
61 PGD 0.591304 0.925
62 3GP 0.590909 0.946667
63 GPX 0.581633 0.946667
64 DGI 0.580645 0.923077
65 IDP 0.576087 0.972973
66 DBG 0.567797 0.948718
67 FE9 0.555556 0.776596
68 2GP 0.555556 0.96
69 G4M 0.547619 0.880952
70 BGO 0.544643 0.924051
71 I2C FE2 CMO CMO 0.538462 0.808989
72 ATP 0.537634 0.92
73 G1G 0.533898 0.925
74 AQP 0.531915 0.92
75 5FA 0.531915 0.92
76 G A A A 0.525862 0.923077
77 U A G G 0.521368 0.935065
78 01G 0.518868 0.902439
79 ITT 0.510638 0.868421
80 P2G 0.510638 0.883117
81 GGM 0.504274 0.901235
82 G1R G1R 0.504065 0.924051
83 DGP 0.5 0.910256
84 PGD O 0.5 0.850575
85 MGO 0.5 0.864198
86 P1G 0.5 0.871795
87 DG 0.5 0.910256
88 GTA 0.495495 0.936709
89 B4P 0.489362 0.894737
90 AP5 0.489362 0.894737
91 IMP 0.489362 0.959459
92 7DT 0.484536 0.906667
93 G G U 0.482143 0.935065
94 GPC 0.479339 0.879518
95 G C 0.478992 0.9
96 BA3 0.478723 0.894737
97 ADP 0.473684 0.92
98 G2Q 0.471698 0.961039
99 G7M 0.46875 0.948052
100 25L 0.458716 0.907895
101 A2D 0.457447 0.894737
102 RGT 0.45045 0.909091
103 AGS 0.45 0.873418
104 SAP 0.45 0.873418
105 SGP 0.44898 0.82716
106 U G A 0.448529 0.888889
107 A4P 0.445378 0.869048
108 G G G RPC 0.442623 0.875
109 ACQ 0.441176 0.896104
110 ANP 0.441176 0.896104
111 8GT 0.441176 0.875
112 APC G U 0.44 0.886076
113 G U34 0.438017 0.888889
114 6AD 0.436893 0.841463
115 G G G C 0.433071 0.9125
116 UP5 0.432203 0.873418
117 35G 0.431373 0.933333
118 C2E 0.431373 0.921053
119 PCG 0.431373 0.933333
120 A G C C 0.429688 0.911392
121 5GP 5GP 0.427184 0.883117
122 TAT 0.427184 0.884615
123 APR 0.425743 0.894737
124 AR6 0.425743 0.894737
125 AN2 0.424242 0.907895
126 7DD 0.424242 0.906667
127 DG DG 0.423423 0.865854
128 AD9 0.421569 0.896104
129 M33 0.42 0.883117
130 7D4 0.42 0.835443
131 UCG 0.419847 0.911392
132 H6Y 0.419048 0.946667
133 G C C C 0.416667 0.924051
134 ACP 0.415842 0.896104
135 T5A 0.414634 0.802326
136 MGQ 0.412844 0.935897
137 ADQ 0.412844 0.871795
138 A1R 0.412844 0.839506
139 MGT 0.411215 0.823529
140 A G U 0.410072 0.888889
141 93A 0.41 0.833333
142 A22 0.407407 0.907895
143 CA0 0.405941 0.896104
144 ATF 0.40566 0.884615
145 AGO 0.404762 0.888889
146 MGV 0.401786 0.890244
147 CGP 0.4 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found: 415
This union binding pocket(no: 1) in the query (biounit: 4k81.bio4) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1GXU 2HP 0.0003507 0.49333 None
2 2QZ4 ADP 0.0001432 0.50298 1.93798
3 1NJF AGS 0.0001996 0.42678 2
4 1NJF ADP 0.0002664 0.41186 2
5 1UPT GTP 0.00000000002481 0.67092 2.92398
6 1T8U UAP SGN IDS SGN 0.008728 0.40071 2.92398
7 1XP8 AGS 0.0008812 0.4815 3.10078
8 1KO8 6PG 0.0004605 0.40282 3.42857
9 1G41 ADP 0.0003102 0.48701 3.48837
10 1TQ4 GDP 0.00000001425 0.65701 3.50877
11 1M7G ADX 0.001078 0.42766 3.50877
12 1M7G ADP 0.001218 0.42259 3.50877
13 4QRH 0O2 0.0004171 0.40799 3.50877
14 4RLQ 3SK 0.02925 0.40753 3.50877
15 1M7G AV2 0.00002012 0.4055 3.50877
16 1HTW ADP 0.00009327 0.40452 3.79747
17 5HCN GCP 0.0000000002315 0.79067 3.83142
18 1B0U ATP 0.001896 0.4452 3.87597
19 4GBM A3P 0.004939 0.40863 3.87597
20 3DKP ADP 0.0002995 0.49917 4.08163
21 2IYL GDP 0.00001001 0.57272 4.09357
22 1YXM ADE 0.00233 0.47324 4.09357
23 2Z49 AMG 0.04834 0.40341 4.09357
24 1BO4 COA 0.02618 0.40214 4.16667
25 3BIB PSF 0.0138 0.42239 4.31034
26 3N5C GDP 0.000000007748 0.72776 4.32099
27 2ZFI ADP 0.000016 0.56257 4.65116
28 5FTB ANP 0.0001706 0.49936 4.65116
29 4Q1A UDP 0.004284 0.46186 4.65116
30 4Q1A 2XZ 0.004284 0.46186 4.65116
31 5FHD ADP ALF 0.000548 0.45677 4.65116
32 3DC4 ADP 0.000001248 0.6369 4.67836
33 1JI0 ATP 0.0000265 0.56735 4.67836
34 3BFV ADP 0.00002315 0.55458 4.67836
35 5XDR ADP 0.000893 0.47019 4.67836
36 3B7G ANP 0.0009159 0.46966 4.67836
37 4LJ9 ACP 0.003357 0.44684 4.67836
38 5H56 TYD 0.0005816 0.43676 4.67836
39 5H56 ADP 0.0005816 0.43676 4.67836
40 1X9I G6Q 0.01151 0.41605 4.67836
41 5I34 GDP 0.000142 0.40605 4.67836
42 4E03 ADP 0.00002838 0.42225 4.85437
43 2JAQ DCP 0.00376 0.41361 4.87805
44 2J5V PCA 0.03068 0.42618 5.03876
45 4GOX A3P 0.002186 0.42352 5.03876
46 2VOH CIT 0.01864 0.40239 5.09554
47 1NU4 MLA 0.002492 0.4147 5.15464
48 1G6H ADP 0.000008498 0.61258 5.26316
49 1T5C ADP 0.00001985 0.58595 5.26316
50 4YDS ATP 0.0000625 0.54782 5.26316
51 3Q9L ATP 0.0000281 0.52427 5.26316
52 3UIE ANP 0.00006841 0.51823 5.26316
53 5I0H ADP BEF 0.000001335 0.49818 5.26316
54 1P9B GDP 0.0003412 0.47492 5.26316
55 2BEK ATP 0.0003591 0.46054 5.26316
56 5K5Z ANP 0.0001685 0.44231 5.26316
57 1P9B HDA 0.02018 0.41791 5.26316
58 2QG6 NMN 0.002263 0.41053 5.26316
59 4OWK NGA 0.03883 0.40236 5.26316
60 5H68 AGS 0.001596 0.40079 5.26316
61 5BQ5 ADP BEF 0.0002192 0.49418 5.29101
62 1YTM ATP 0.0003346 0.46613 5.42636
63 1OS1 ATP 0.002515 0.4042 5.42636
64 1VHT BA3 0.0002345 0.49279 5.50459
65 3IIJ ADP 0.00001288 0.56727 5.55556
66 5EE5 GTP 0.00000000001382 0.67894 5.6338
67 4RZ3 ADP 0.0001212 0.42318 5.81395
68 2A5F GTP 0.00000000006673 0.67793 5.84795
69 3NHB ADP 0.00004154 0.56373 5.84795
70 2OBM ADP 0.000304 0.51948 5.84795
71 2B8W ALF 5GP 0.00001347 0.51132 5.84795
72 2C9O ADP 0.00008813 0.49144 5.84795
73 3ZS9 ADP ALF 0.00006502 0.47468 5.84795
74 4XGU ADP 0.0003699 0.47332 5.84795
75 3FVQ ATP 0.0002327 0.47302 5.84795
76 2WOJ ADP ALF 0.0000977 0.46766 5.84795
77 3IO3 ADP 0.00004025 0.44131 5.84795
78 3VM7 GLC 0.009521 0.43942 5.84795
79 3QKT ANP 0.001383 0.42843 5.84795
80 1O8B ABF 0.01535 0.41795 5.84795
81 3G5S GSH 0.02706 0.40524 5.84795
82 1W7J ADP BEF 0.00001088 0.54302 5.96026
83 4IJ6 SEP 0.04744 0.40055 6.16114
84 3ZQ6 ADP ALF 0.0000262 0.48105 6.20155
85 1W5T ANP 0.000192 0.47667 6.20155
86 1W5T ADP 0.000334 0.47534 6.20155
87 2Q2Y ADP 0.0009161 0.44084 6.20155
88 2Q2Y MKR 0.0009603 0.43883 6.20155
89 1V0O INR 0.008502 0.41128 6.20155
90 2Z5F A3P 0.008621 0.40444 6.20155
91 5KUT GDP 0.0000000002249 0.56837 6.34921
92 3U6B GDP 0.0000000005457 0.79861 6.43275
93 2BVN GNP 0.0000000002061 0.76907 6.43275
94 4G5G GDP 0.000000002301 0.75403 6.43275
95 3U6K GDP 0.000000004332 0.74034 6.43275
96 3A4M ADP 0.000007905 0.59488 6.43275
97 4WZ6 ATP 0.00003052 0.57087 6.43275
98 1D8T GDP 0.000000001176 0.53249 6.43275
99 2HCJ GDP 0.0000000005542 0.53074 6.43275
100 5JBQ GDP 0.000000001727 0.5295 6.43275
101 4R43 GDP 0.0004124 0.49225 6.43275
102 2FAH GDP 0.0001903 0.49164 6.43275
103 4QOS ADP 0.000768 0.46828 6.43275
104 1QAN SAH 0.0007415 0.44325 6.43275
105 3RC3 ANP 0.01263 0.42231 6.43275
106 2NZ5 226 0.003705 0.4179 6.43275
107 2ZPA ADP 0.0003186 0.40814 6.43275
108 3WYA GDP 0.0000000005342 0.78563 6.45161
109 3WY9 GDP 0.000000001657 0.77397 6.45161
110 1KSH GDP 0.0000000001083 0.63732 6.57895
111 2OZE AGS 0.0004914 0.46317 6.58915
112 5J1J ANP 0.00003806 0.45931 6.58915
113 2CFI ZZZ 0.02581 0.4063 6.58915
114 4WOP CTP 0.000009455 0.46755 6.66667
115 1G5N UAP SGN IDS SGN 0.02838 0.41662 6.97674
116 1KK1 GNP 0.000000009831 0.73447 7.01754
117 3CNL GNP 0.00000001257 0.72902 7.01754
118 2C78 GNP 0.0000000004527 0.7131 7.01754
119 1WDT GTP 0.0000000416 0.64468 7.01754
120 1GOJ ADP 0.000001822 0.64203 7.01754
121 2C77 GNP 0.0000000007619 0.61081 7.01754
122 1SQ5 ADP 0.00002183 0.54863 7.01754
123 1FP6 ADP 0.0000127 0.54631 7.01754
124 4WZA ACP 0.00005774 0.50973 7.01754
125 4WZA ADP 0.00005774 0.50973 7.01754
126 3ZFD ANP 0.0000002796 0.49129 7.01754
127 4OHY ANP 0.00006474 0.48322 7.01754
128 4PFO ADP 0.00003804 0.46964 7.01754
129 1U0J ADP 0.00295 0.45467 7.01754
130 1QF5 RPL 0.006009 0.44383 7.01754
131 2X7I CIT 0.004667 0.4397 7.01754
132 2PEZ GGZ 0.0007069 0.43638 7.01754
133 2PEZ DAT 0.0007069 0.43638 7.01754
134 4P32 ADP 0.004333 0.4142 7.01754
135 5IRN ADP 0.0001878 0.40563 7.01754
136 2YRX AMP 0.03706 0.40465 7.09534
137 1L2T ATP 0.001017 0.43393 7.23404
138 4RD0 GDP 0.00000000004713 0.65993 7.36434
139 1QHG ATP 0.00368 0.43178 7.36434
140 2VB6 ADP BEF 0.00003877 0.45838 7.38255
141 1DAK DPU 0.0001047 0.40128 7.58929
142 3VMF GTP 0.0000000008758 0.64364 7.60234
143 3WXM GTP 0.0000000013 0.63748 7.60234
144 1TAD GDP 0.000000004255 0.63655 7.60234
145 1TAD ALF 0.000000004255 0.63655 7.60234
146 2XT3 ADP 0.000006968 0.61018 7.60234
147 2WHX ADP 0.0000404 0.56375 7.60234
148 3T34 GDP 0.00001904 0.51003 7.60234
149 3TBK ANP 0.0006356 0.49502 7.60234
150 1IN4 ADP 0.0007014 0.45628 7.60234
151 4X1Z FUC GAL NDG 0.02284 0.42479 7.60234
152 1LVG ADP 0.000003253 0.41412 7.60234
153 1NHX FTB 0.007192 0.40807 7.60234
154 1NHX PEP 0.007532 0.4063 7.60234
155 1UKZ ADP 0.004846 0.40435 7.60234
156 2OFW ADX 0.0008154 0.44172 7.69231
157 1G6O ADP 0.0001864 0.49753 7.75194
158 5N69 ADP 0.000009113 0.44756 7.75194
159 4B9E FAH 0.02539 0.41625 7.75194
160 3H86 AP5 0.001014 0.43286 7.8125
161 3CQL NAG 0.03458 0.40157 7.81893
162 3BOS CDP 0.0002176 0.50609 7.85124
163 3QXC ATP 0.000909 0.42919 7.85124
164 4TTQ ATP 0.00005771 0.53481 7.90698
165 1PTR PRB 0.007184 0.44574 8
166 3FIU POP 0.04361 0.40024 8.03213
167 2DPY ADP 0.0002192 0.51925 8.13953
168 5IRR GSP 0.000000008556 0.65846 8.18713
169 1AZT GSP 0.0000000008752 0.64947 8.18713
170 3LRE ADP 0.00000213 0.64023 8.18713
171 1CS4 GSP 0.000000004432 0.6332 8.18713
172 4CVN ADP 0.00001823 0.57586 8.18713
173 2RCN GDP 0.0000000003723 0.54851 8.18713
174 2GDJ ANP 0.0001144 0.52 8.18713
175 4IDN GNP 0.000056 0.49509 8.18713
176 1K6M AGS 0.0003795 0.45546 8.18713
177 3FWY ADP 0.00001174 0.45234 8.18713
178 4OI4 ATP 0.000772 0.44251 8.18713
179 4XVU ATP 0.0001392 0.43938 8.18713
180 3FB4 AP5 0.001083 0.43787 8.18713
181 5E5U MLI 0.0111 0.43778 8.18713
182 4MKF AP5 0.001225 0.4368 8.18713
183 2BIF ANP 0.001781 0.42174 8.18713
184 2BIF SIN 0.003193 0.42174 8.18713
185 4V03 ADP 0.00004883 0.42022 8.18713
186 2FJK 13P 0.01694 0.41167 8.18713
187 3FYH ADP 0.005118 0.40499 8.18713
188 4DYG MES 0.0306 0.40464 8.19672
189 1B7T ADP 0.0001392 0.50355 8.33333
190 1GQY ACP 0.01657 0.40126 8.52713
191 2IL4 COA 0.01679 0.40099 8.73786
192 1V8K ANP 0.0000002029 0.6571 8.77193
193 1D2E GDP 0.00000005362 0.65674 8.77193
194 2XTN GTP 0.0000003574 0.58252 8.77193
195 4AG5 ADP 0.00001806 0.58235 8.77193
196 3EC1 GDP 0.000000006731 0.52351 8.77193
197 5M04 GDP 0.000000001637 0.52176 8.77193
198 4ZG4 VO4 ADP 0.000001077 0.51494 8.77193
199 5G41 AP5 0.000964 0.44536 8.77193
200 4MKG AP5 0.0008215 0.44277 8.77193
201 1NN5 ANP 0.001447 0.40206 8.83721
202 3EZ2 ADP 0.0001792 0.51684 8.91473
203 1G8S MET 0.01045 0.43161 9.13043
204 4H1V GNP 0.000001848 0.57807 9.30233
205 1YQT ADP 0.00009919 0.54333 9.30233
206 4IOK ADP 0.0003672 0.44135 9.30233
207 4IOK XPO 0.0002107 0.43791 9.30233
208 1KK8 BEF ADP 0.00002963 0.52323 9.35252
209 4J0Q GDP 0.00000000412 0.75376 9.35672
210 4LC1 GDP 0.000000005081 0.73689 9.35672
211 4PC3 GDP 0.00000006516 0.6528 9.35672
212 2NCD ADP 0.000002828 0.62452 9.35672
213 2HF9 GSP 0.0000002325 0.61905 9.35672
214 1JWY GDP 0.0000009835 0.59798 9.35672
215 1JWY ADP 0.000035 0.53865 9.35672
216 4WEI GLC GAL 0.009483 0.44287 9.35672
217 2GWH A3P 0.01176 0.40483 9.35672
218 3DOE GTP 0.0000000002002 0.71905 9.69697
219 3KTA AP5 0.0007551 0.4638 9.82659
220 2GUC MAN 0.02434 0.41464 9.83607
221 2NU5 NAG 0.02774 0.4114 9.83607
222 2GUD MAN 0.02415 0.41047 9.83607
223 2HYR BGC GLC 0.02748 0.40611 9.83607
224 2NUO BGC 0.03268 0.40401 9.83607
225 3MD0 GDP 0.000000004589 0.75137 9.94152
226 2CBZ ATP 0.000001958 0.64926 9.94152
227 4P3Y GDP 0.0000000006351 0.52973 9.94152
228 2D2F ADP 0.0003076 0.52043 9.94152
229 1OYY AGS 0.0006919 0.48105 9.94152
230 4A4Z ANP 0.003453 0.44623 9.94152
231 4NZ6 DGL 0.008444 0.43908 9.94152
232 1D2N ANP 0.001623 0.43617 9.94152
233 2FNA ADP 0.0001447 0.47744 10.0775
234 4PJ3 ANP 0.001506 0.44985 10.0775
235 2ODE ALF GDP 0.000000001529 0.65398 10.2857
236 1QHH ATP 0.008671 0.42208 10.4348
237 3TK1 GDP 0.0000000005029 0.81483 10.5263
238 5VGR GDP 0.0006804 0.46127 10.5263
239 2GK6 ADP 0.002063 0.4682 10.8527
240 2WIC GNP 0.00000001603 0.70112 11.1111
241 1SKQ GDP 0.00000004533 0.70057 11.1111
242 4IEE AGS 0.0001733 0.51758 11.1111
243 4R98 GNH 0.000001086 0.4652 11.1111
244 2XWL CTP 0.01174 0.40487 11.1111
245 5JBE MAL 0.0323 0.40109 11.1111
246 4LYA ATP 0.00007513 0.52251 11.2403
247 1ZUI SKM 0.0003317 0.40597 11.3095
248 1SVK ALF GDP 0.0000000005466 0.67424 11.6147
249 4YS0 ADP 0.0005502 0.46547 11.6279
250 2WJG GDP 0.0000000475 0.68851 11.6959
251 1JJV ATP 0.00001119 0.59261 11.6959
252 1XEX ATP 0.004607 0.40396 11.6959
253 3PCR GTP 0.0000000006371 0.69795 12.0155
254 3BFX A3P 0.004081 0.42216 12.0155
255 2WJH GDP 0.00000008116 0.50566 12.0482
256 2WJH FLC 0.000002921 0.46387 12.0482
257 4NON GDP 0.00000007995 0.5842 12.2807
258 3FKQ ATP 0.000047 0.51411 12.2807
259 1D6Z HY1 0.03132 0.40757 12.2807
260 4KAX GTP 0.0000000003516 0.63286 12.4224
261 1F2U ATP 0.002981 0.40869 12.7517
262 1G7C 5GP 0.000001519 0.61353 12.766
263 4ZKD GDP 0.000000001262 0.64624 12.8655
264 1JJ7 ADP 0.000006539 0.62026 12.8655
265 2IXE ATP 0.000484 0.45499 12.8655
266 3HNT AXR BXY BXY BXX 0.02289 0.40141 13.0841
267 1FQJ ALF 0.0000004045 0.67016 13.2308
268 1FQK ALF 0.0000007565 0.66194 13.2308
269 1FQJ GDP 0.00000002608 0.63026 13.2308
270 1FQK GDP 0.00000006615 0.61329 13.2308
271 3IWD M2T 0.0268 0.41027 13.2353
272 5J1S ATP 0.003798 0.41034 13.3891
273 3TMK T5A 0.002433 0.40386 13.4259
274 5GOE GDP 0.00000001324 0.6948 13.4503
275 1Y63 ADP 0.000048 0.5388 13.4503
276 3B5J 12D 0.0001123 0.53447 13.4503
277 4MDB RLT 0.01267 0.43585 13.4503
278 2QEN ADP 0.0000437 0.43225 13.4503
279 1Z6T ADP 0.000162 0.48965 13.5659
280 2XTZ GSP 0.000000001307 0.66877 14.0351
281 2PL3 ADP 0.0003368 0.50284 14.0351
282 3BER AMP 0.0084 0.42694 14.0562
283 1GP2 GDP 0.0000003344 0.58374 14.0845
284 2IS6 ADP 0.000165 0.51208 14.6199
285 1IHU AF3 0.00007556 0.48953 14.6199
286 1IHU ADP 0.00009826 0.48011 14.6199
287 2W58 ADP 0.000001221 0.66226 14.7287
288 3PQC GDP 0.00000002159 0.6847 14.8718
289 4BAS GNP 0.000000001526 0.60974 15.0754
290 5MZN ADP 0.001654 0.47324 15.1163
291 4NCN GTP 0.00000000003345 0.75168 15.2047
292 4TMZ GSP 0.00000000004481 0.74635 15.2047
293 3CX8 GSP 0.000000001416 0.64169 15.2047
294 1ZCB GDP 0.00000006977 0.57559 15.2047
295 1MKY GDP 0.00000000009433 0.56475 15.2047
296 3AB3 GDP 0.00000009016 0.54424 15.2047
297 3ZIA ATP 0.00007069 0.40693 15.2047
298 3ZIA ADP 0.0001932 0.40585 15.2047
299 2AWN ADP 0.000001329 0.66638 15.7895
300 4QM7 GTP 0.0000188 0.55908 15.7895
301 2CHG ANP 0.0004606 0.46899 15.7895
302 3RLF ANP 0.00053 0.44937 15.7895
303 4XTR ATP 0.0001214 0.44131 16.2162
304 4XTR ADP 0.0001437 0.42269 16.2162
305 2ZTS ADP 0.001244 0.44518 16.9591
306 5X40 ACP 0.001118 0.40427 16.9591
307 3QF7 ANP 0.002052 0.41659 17.5439
308 1GOT GDP 0.0000001051 0.61182 17.8082
309 4HSE ADP 0.0000571 0.52831 18.1287
310 4P4T GDP 0.000004548 0.55381 18.7134
311 4BQS ADP 0.00007044 0.5305 18.75
312 4BQS K2Q 0.001661 0.42552 18.75
313 2ZR9 DTP 0.0003758 0.49426 19.2982
314 1UJ2 C5P 0.001982 0.40857 19.2982
315 1UJ2 ADP 0.002267 0.40633 19.2982
316 1X6V ADP 0.001879 0.40851 19.3798
317 2W83 GTP 0.0000000002536 0.71474 19.4805
318 3VY6 BGC BGC 0.01963 0.41781 19.8582
319 4HI0 GDP 0.00000007723 0.62495 19.883
320 4LPS GDP 0.00000005148 0.67647 20.4678
321 1H65 GDP 0.000003765 0.54529 21.0526
322 2X77 GDP 0.0000000003878 0.77977 21.164
323 2OM2 GDP 0.0000003172 0.59816 22.2222
324 3DEF GDP 0.0000006391 0.60669 23.9766
325 3W5J GDP 0.000003572 0.62125 24.5614
326 2V7Q ADP 0.00005467 0.53598 24.5614
327 2V7Q ATP 0.0001188 0.50683 24.5614
328 2CK3 ANP 0.0003636 0.469 24.5614
329 2CK3 ADP 0.0006363 0.44604 24.5614
330 1W0J ADP 0.0001346 0.41107 24.5614
331 1W0J ADP BEF 0.0004689 0.40434 24.5614
332 3VX3 ADP 0.0002465 0.47652 25.1462
333 3DZD ADP 0.0005642 0.46969 25.1462
334 4KVA GTP 0.00005424 0.4129 26.3158
335 4PPF FLC 0.000006602 0.61562 26.3566
336 4M9Q GNP 0.0000000001862 0.72962 26.9006
337 3KJI ADP 0.00007236 0.42241 26.9006
338 4V0K GDP 0.0000001708 0.58946 27.2189
339 4B47 GDP 0.0000000005707 0.79761 27.4854
340 3T12 GDP ALF 0.000000003735 0.67387 28.655
341 3T1O GDP 0.0000002046 0.49972 28.655
342 1LOB MMA 0.03806 0.40324 28.8462
343 1G7S GDP 0.00000001303 0.70551 29.2398
344 1YRB GDP 0.0000000005278 0.75007 29.8246
345 5FG3 GDP 0.0000000003398 0.53756 30.9942
346 4DCT GDP 0.000000001028 0.75918 31.5789
347 1S9D GDP 0.000000002787 0.7381 31.5789
348 1RE0 GDP 0.000000002819 0.51592 31.5789
349 3AQ4 GDP 0.000000001193 0.75603 32.1637
350 1WF3 GNP 0.000000003705 0.62823 32.1637
351 1NRJ GTP 0.000000002768 0.59336 32.2785
352 1ZD9 GDP 0.00000000001352 0.80015 32.7485
353 4YLG GDP 0.000000001203 0.58029 32.7485
354 1YZG GDP 0.000000002525 0.54208 32.7485
355 1R4A GNP 0.000000000003466 0.78279 33.3333
356 2QN6 GDP 0.000000002712 0.76304 33.3333
357 1ZJ6 G3D 0.000000002417 0.7411 33.3333
358 1J2J GTP 0.00000000008324 0.73506 33.7349
359 2J59 GTP 0.0000000002152 0.71774 33.7349
360 1O3Y GTP 0.0000000004013 0.70637 33.7349
361 5KSP GDP 0.0000000569 0.67435 36.8421
362 5KSZ GCP 0.00000002814 0.5246 36.8421
363 1DAR GDP 0.00000006115 0.49454 37.4269
364 2QTV GNP 0.000000006737 0.60446 38.5965
365 2ZEJ GDP 0.000001088 0.54522 38.5965
366 4ZI2 GNP 0.0000000001026 0.64883 39.1813
367 4GOJ GNP 0.0000000001365 0.64509 39.1813
368 5KDO GDP 0.0000002107 0.60592 39.1892
369 1M2O GNP 0.000000007527 0.60966 39.7661
370 1F6B GDP 0.0000000523 0.67614 40.3509
371 5DI3 GNP 0.0000000002816 0.72193 40.9357
372 2GJ8 ALF GDP 0.0000000007347 0.67112 40.9357
373 3A1S GDP 0.00000000522 0.72483 43.8596
374 1SVI GDP 0.0000000004745 0.80171 45.614
375 3GJ4 GDP 0.0000000001971 0.80721 46.7836
376 3GJX GTP 0.0000000000001106 0.80163 46.7836
377 3GJ7 GDP 0.0000000002955 0.79845 46.7836
378 3GJ8 GDP 0.0000000007177 0.76676 46.7836
379 3GJ5 GDP 0.0000000007624 0.76549 46.7836
380 3REF GDP 0.000000003295 0.6762 46.7836
381 5UWQ GNP 0.00000000000005362 0.83539 47.3684
382 5UWJ GNP 0.00000000000006317 0.83256 47.3684
383 5UWW GNP 0.00000000000006395 0.83235 47.3684
384 5UWO GNP 0.00000000000006639 0.83169 47.3684
385 5UWH GNP 0.00000000000007672 0.82922 47.3684
386 1IBR GNP 0.00000000000008682 0.82708 47.3684
387 5UWP GNP 0.0000000000001069 0.81331 47.3684
388 5UWR GNP 0.00000000000005618 0.81263 47.3684
389 5DHF GNP 0.00000000000005684 0.81245 47.3684
390 4HAT GNP 0.000000000000115 0.81207 47.3684
391 5DI9 GNP 0.0000000000001281 0.81024 47.3684
392 5UWI GNP 0.00000000000006584 0.81004 47.3684
393 5UWU GNP 0.00000000000006806 0.80951 47.3684
394 5UWT GNP 0.00000000000007649 0.80761 47.3684
395 5UWS GNP 0.0000000000001499 0.80759 47.3684
396 3GJ0 GDP 0.0000000002412 0.80284 47.3684
397 1WA5 GTP 0.0000000000002854 0.75008 47.3684
398 5BXQ GDP 0.0000000005094 0.55507 47.3684
399 3GJ3 GDP 0.0000000003521 0.54858 47.3684
400 3RAB GNP 0.00000000000004907 0.80299 47.929
401 3WYF GTP 0.0000000000002572 0.79844 48.538
402 3WYG GTP 0.0000000000006346 0.78314 48.538
403 1D5C GDP 0.00000000007648 0.77756 48.7654
404 1Z0J GTP 0.0000000000001814 0.81437 48.8235
405 4DKX GDP 0.00000000002317 0.85354 49.1228
406 2NGR GDP 0.00000000003585 0.83009 49.1228
407 2WMO GTP 0.0000000002162 0.77977 49.1228
408 1GRN GDP 0.0000000001322 0.76675 49.1228
409 4DID GDP 0.000000003722 0.73198 49.1228
410 2NGR AF3 0.0000001811 0.68084 49.1228
411 1GRN AF3 0.000001243 0.63699 49.1228
412 4ITR GDP 0.00000004931 0.5381 49.1228
413 3E5H GNP 0.0000000000006731 0.80174 49.7076
414 1A4R GNH 0.0000000001352 0.76631 49.7076
415 1A4R GDP 0.0000000002448 0.74409 49.7076
416 1YZQ GNP 0.00000000000009892 0.82482 50
Pocket No.: 2; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found: 39
This union binding pocket(no: 2) in the query (biounit: 4k81.bio2) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2Q37 3AL 0.01323 0.42665 3.50877
2 5HR5 ADP 0.0003559 0.40593 4.09357
3 2Y65 ADP 0.0000008381 0.40064 4.09357
4 3H4S ADP 0.000001688 0.40811 4.26357
5 4FRZ ADP 0.000006173 0.40686 4.26357
6 3COB ADP 0.0000009875 0.41311 4.67836
7 5TSH ANP 0.00005589 0.40378 4.67836
8 1OS1 PYR 0.001745 0.40249 5.42636
9 2YY8 MTA 0.01462 0.40958 5.47264
10 5GJC ATP 0.00006438 0.40192 5.84795
11 1OFH ADP 0.0001036 0.41076 6.32184
12 2PNZ 5GP 0.02761 0.41088 6.82731
13 1EXF GLY 0.003895 0.41105 7.02479
14 4OKD GLC GLC GLC 0.01213 0.42963 7.60234
15 2JLR ANP 0.0002847 0.40387 7.60234
16 2CE7 ADP 0.0001544 0.4032 7.60234
17 3BP1 GUN 0.01881 0.41784 8.18713
18 4LZB URA 0.02503 0.40086 8.18713
19 4PU6 ASP 0.02124 0.41355 8.39695
20 2VVG ADP 0.0000003351 0.41039 8.77193
21 4D81 ADP 0.0001714 0.41064 8.91473
22 3R7F CP 0.01287 0.42738 9.35672
23 1APZ ASP 0.02504 0.40977 9.92908
24 5IFS ADP 0.0001737 0.40333 9.94152
25 1SQL GUN 0.03906 0.40286 10.274
26 1P4V GLY 0.01946 0.41638 10.5263
27 3EWA ANP 0.00006307 0.4011 10.5263
28 1F9V ADP 0.00000636 0.40699 10.8527
29 2HXW FLC 0.01125 0.42807 10.9705
30 5MVR ADP 0.00004862 0.40738 11.1111
31 2O66 FLC 0.03138 0.4072 11.1111
32 1R6B ADP 0.00009628 0.40685 11.2403
33 4KJU 1RH 0.01072 0.43337 11.6279
34 4U60 SIA 0.02351 0.41882 13.5659
35 4U60 SIA GAL NGA 0.02464 0.41715 13.5659
36 1GET FAD 0.02611 0.40147 15.2047
37 1GET NAP 0.02766 0.40147 15.2047
38 1CR1 TTP 0.000661 0.40824 22.2222
39 5EPK 5R0 PHE ALA LEU ELY 5R5 0.01515 0.40169 32.7273
Pocket No.: 3; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found: 17
This union binding pocket(no: 3) in the query (biounit: 4k81.bio3) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1SBR VIB 0.03585 0.40282 3
2 4YFY 1YJ 0.01328 0.40242 3.14961
3 2Z48 A2G 0.019 0.42123 4.09357
4 1P3D ANP 0.009732 0.40213 4.09357
5 1I9G SAM 0.008586 0.40145 5.26316
6 1IG3 VIB 0.03907 0.41048 5.81395
7 1M0S CIT 0.03319 0.40064 5.84795
8 1OBD AMP 0.03927 0.40289 6.20155
9 2ZL4 ALA ALA ALA ALA 0.02476 0.412 7.14286
10 2BOS GLA GAL GLC NBU 0.04451 0.40191 7.35294
11 4MN7 SME 0.02249 0.40547 7.38255
12 1LK7 DER 0.02031 0.40396 8.18713
13 1GJW GLC 0.0103 0.41886 9.94152
14 4UOX PUT 0.01433 0.40422 15.2047
15 1ZX5 LFR 0.008268 0.41719 16.3743
16 4BCQ TJF 0.02707 0.40141 18.1287
17 1LOJ URI 0.02566 0.40395 18.3908
Pocket No.: 4; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found: 8
This union binding pocket(no: 4) in the query (biounit: 4k81.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1DQN IMU 0.02541 0.40531 6.43275
2 5E50 ALA TYR ASP GLU SEP TPO ASP GLU GLU 0.02424 0.40637 8.10811
3 2WZF BGC 0.01079 0.43096 11.6959
4 3P4X ADP 0.00005508 0.40024 12.2807
5 1R18 SAH 0.006838 0.40122 12.3348
6 1YBH P22 0.025 0.40181 15.7895
7 1C3V PDC 0.03012 0.40681 16.3743
8 2ZJ5 ADP 0.02227 0.41485 16.6667
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