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Receptor
PDB id Resolution Class Description Source Keywords
4LHD 1.8 Å EC: 1.4.4.2 CRYSTAL STRUCTURE OF SYNECHOCYSTIS SP. PCC 6803 GLYCINE DECA (P-PROTEIN), HOLO FORM WITH PYRIDOXAL-5'-PHOSPHATE AND GLYCC LOSED FLEXIBLE LOOP SYNECHOCYSTIS SP. ALPHA(2) HOMODIMER DEHYDROGENASE (DECARBOXYLATING) COFACTOPYRIDOXAL 5-prime -PHOSPHATE OXIDOREDUCTASE
Ref.: STRUCTURE OF THE HOMODIMERIC GLYCINE DECARBOXYLASE FROM SYNECHOCYSTIS SP. PCC 6803 SUGGESTS A MECHANIS REDOX REGULATION. J.BIOL.CHEM. V. 288 35333 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PO4 A:1009;
B:1004;
A:1008;
B:1005;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
94.971 O4 P [O-]P...
GLY A:1004;
B:1001;
A:1003;
A:1002;
B:1002;
A:1001;
Invalid;
Valid;
Invalid;
Invalid;
Invalid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
75.067 C2 H5 N O2 C(C(=...
EDO A:1010;
A:1014;
B:1006;
B:1008;
A:1013;
B:1009;
A:1011;
B:1007;
A:1017;
A:1015;
A:1012;
A:1016;
B:1010;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
BCT B:1003;
A:1007;
A:1005;
A:1006;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
61.017 C H O3 C(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4LHD 1.8 Å EC: 1.4.4.2 CRYSTAL STRUCTURE OF SYNECHOCYSTIS SP. PCC 6803 GLYCINE DECA (P-PROTEIN), HOLO FORM WITH PYRIDOXAL-5'-PHOSPHATE AND GLYCC LOSED FLEXIBLE LOOP SYNECHOCYSTIS SP. ALPHA(2) HOMODIMER DEHYDROGENASE (DECARBOXYLATING) COFACTOPYRIDOXAL 5-prime -PHOSPHATE OXIDOREDUCTASE
Ref.: STRUCTURE OF THE HOMODIMERIC GLYCINE DECARBOXYLASE FROM SYNECHOCYSTIS SP. PCC 6803 SUGGESTS A MECHANIS REDOX REGULATION. J.BIOL.CHEM. V. 288 35333 2013
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4LHC - GLY C2 H5 N O2 C(C(=O)O)N
2 4LHD - GLY C2 H5 N O2 C(C(=O)O)N
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4LHC - GLY C2 H5 N O2 C(C(=O)O)N
2 4LHD - GLY C2 H5 N O2 C(C(=O)O)N
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4LHC - GLY C2 H5 N O2 C(C(=O)O)N
2 4LHD - GLY C2 H5 N O2 C(C(=O)O)N
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY; Similar ligands found: 5
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY 1 1
2 BAL 0.5625 0.708333
3 ABU 0.473684 0.708333
4 MCR 0.466667 0.65
5 2RA 0.421053 0.692308
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: 75
This union binding pocket(no: 1) in the query (biounit: 4lhd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 4KCF AKM 1.10132
2 2C42 PYR 1.11902
3 2C42 TPP 1.11902
4 3C6K MTA 1.42421
5 3C6K SPD 1.42421
6 1OZH HE3 1.76678
7 5MM0 GDD 2.13904
8 2J4K U5P 2.21239
9 5T8O 76Z 2.29226
10 4J0Q GDP 2.30947
11 3OJF IMJ 2.33463
12 3OJF NDP 2.33463
13 4AMV F6R 2.46305
14 2DVZ GLU 2.54777
15 1NY5 ADP 2.58398
16 3IOI 1GW 2.68456
17 4MDH NAD 2.69461
18 1TPY SAH 2.78746
19 1KPH SAH 2.78746
20 1KPG SAH 2.78746
21 4Q9M 2ZW 2.84553
22 4Q9M FPP 2.84553
23 1PFK ADP 3.125
24 2VDV SAM 3.25203
25 4WKC BIG 3.26531
26 1XFF GLU 3.33333
27 4UDB CV7 3.67647
28 6HKE MLT 3.77358
29 6HKE LMR 3.77358
30 1OJ4 ANP 3.88693
31 5LW0 AR6 3.8961
32 6BR8 6OU 3.96825
33 1MOQ GLP 4.07609
34 4V0K GDP 4.14201
35 5V13 JH3 4.51389
36 1RL4 BRR 4.78723
37 4I71 AGV 4.84848
38 1F06 NDP 5
39 1F06 2NP 5
40 3POT COM 5.22088
41 3POT TXZ 5.22088
42 3POT TP7 5.22088
43 5WKC FAD 5.31758
44 4UMX VVS 5.41176
45 4UMX NAP 5.41176
46 5I7S NAD 5.7971
47 5I7S E9P 5.7971
48 1ON3 MCA 5.92734
49 5A8R TP7 6.03774
50 1U00 GLU LEU PRO PRO VAL LYS ILE HIS CYS 6.1674
51 4D42 W0I 6.38298
52 4D42 NAP 6.38298
53 5T2U NAP 6.45161
54 4WKB TDI 6.96721
55 2Q0L FAD 7.07396
56 5N7O 69Y 7.69231
57 5ECP MET 8.52174
58 5ECP JAA 8.52174
59 5M45 AMP 8.92857
60 3TDH AMP 8.93855
61 3CHT 4NB 9.52381
62 5TDU PCR 9.70874
63 5XGX DAS DLY 10.3797
64 2VVT I24 10.6897
65 5G3N X28 11.811
66 1QG6 NAD 11.8774
67 1QG6 TCL 11.8774
68 5EXE 5SR 11.8987
69 3R35 4CO 13.245
70 4XBA GMP 14
71 4XBA 5GP 14
72 5GZ6 7C3 14.1104
73 5GZ6 NDP 14.1104
74 2QRD ATP 16.4948
75 2XN5 FUN 17.1429
Pocket No.: 2; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: 58
This union binding pocket(no: 2) in the query (biounit: 4lhd.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 2Q4W FAD 1.52672
2 1UPA TPP 1.57068
3 2IHT TPP 1.57068
4 1TKB N1T 1.62242
5 2IHU TP9 1.62767
6 4N49 SAM 1.63551
7 6APV 3L4 1.85185
8 2C6Q IMP 1.9943
9 4X7R UDP 2.0284
10 3H4L ANP 2.17984
11 1YQS BSA 2.29226
12 3AHQ FAD 2.36559
13 3NTA FAD 2.43902
14 4QWT ACD 2.44253
15 6C1S EFV 2.67765
16 1C3V NDP 2.85714
17 3CQ5 PMP 2.98103
18 5NN0 92H 3.02457
19 2X6T NAP 3.08123
20 5B3A 0JO 3.08483
21 1NN5 2DT 3.25581
22 1NN5 ANP 3.25581
23 1PL6 572 3.37079
24 4D7E FAD 3.4965
25 2YYY NAP 3.49854
26 2D2I NAP 3.68421
27 4PIO AVI 4.64396
28 1V8B NAD 4.80167
29 2QQ0 ANP 4.8913
30 1H0H 2MD 4.913
31 3LKZ SFG 4.98442
32 1U3U NAD 5.34759
33 1U3U BNF 5.34759
34 6CDG PRO GLY LEU TRP LYS SER 5.38922
35 3EVG SAH 5.45455
36 4C3Y ANB 5.66038
37 4C3Y FAD 5.66038
38 1N07 ADP 6.13497
39 1N07 FMN 6.13497
40 2P41 SAH 6.22951
41 5CUQ NSC 6.36704
42 3WR7 COA 6.47059
43 1E3W NAD 6.51341
44 6F5Z SAH 7.35931
45 4WEY EG6 7.40741
46 6AM8 PLT 7.57576
47 2WCJ M21 7.80142
48 3ANP DAO 7.84314
49 3GCZ SAM 8.15603
50 4O4K 2PK 8.63095
51 4IMG NGF 9.21502
52 5MQ5 ASP 9.63855
53 1WNG SAH 10.1887
54 3EVF GTA 10.4693
55 3EVF SAH 10.4693
56 2DT5 NAD 11.3744
57 2FR6 CTN 25.3425
58 2FR6 URI 25.3425
Pocket No.: 3; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: 27
This union binding pocket(no: 3) in the query (biounit: 4lhd.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 1CSI OAA 1.37931
2 1CSI CMX 1.37931
3 4IX4 ADP 1.42857
4 2GPT TLA 1.72084
5 5YJF SAH 2.46479
6 5YJF 8WO 2.46479
7 3LCV SAM 2.4911
8 2ZWI C5P 2.94906
9 5L9V OGA 3.1746
10 2OBF F83 3.46021
11 2OBF SAH 3.46021
12 5X20 AOT 3.84615
13 3PXP MYR 4.10959
14 1LAF ARG 5.04202
15 3H0A 9RA 5.70175
16 3TXO 07U 6.51558
17 4A3U FMN 7.26257
18 2RC5 FAD 7.32484
19 3I27 SID 7.8125
20 6BOX SAH 9.57096
21 2Z6C FMN 10.8527
22 6FS0 E4W 12.844
23 5F2T PLM 16.2338
24 2DYR TGL 19.5652
25 5ZCO TGL 19.5652
26 5Z84 TGL 19.5652
27 2DYS TGL 19.5652
Pocket No.: 4; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4lhd.bio1) has 1 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: 680
This union binding pocket(no: 5) in the query (biounit: 4lhd.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4NMC FAD 1.01729
2 4NMC 2OP 1.01729
3 2WSI FAD 1.30719
4 5UCD NAP 1.31291
5 1X39 IDE 1.3289
6 2QA1 FAD 1.4
7 2JB2 PHE 1.43149
8 2JB2 FAD 1.43149
9 4EHU ANP 1.44928
10 3RUV ANP 1.4733
11 6FDF SAH 1.52594
12 1G51 AMO 1.55172
13 6ECW SAH 1.5873
14 5JJR SAH 1.68161
15 5Y77 FAD 1.69133
16 3HAZ FAD 1.7294
17 1YY5 FAD 1.75439
18 5GSN FAD 1.766
19 5GSN NAP 1.766
20 5GSN MMZ 1.766
21 3DAA PDD 1.80505
22 2VVL FAD 1.81818
23 4NBI D3Y 1.82927
24 4K5S PM0 1.86567
25 4K5S FAD 1.86567
26 1V5F TPP 1.86757
27 1V5F FAD 1.86757
28 2X2M X2M 1.91083
29 4YNU FAD 1.92644
30 4YNU LGC 1.92644
31 4J75 TYM 1.95599
32 2YG3 FAD 1.98676
33 3COW 52H 1.99336
34 1WUU ANP 2.00501
35 5MBX SP5 2.01207
36 5MBX FAD 2.01207
37 2BRY FAD 2.01207
38 4X7R 3YW 2.0284
39 4X7R NTO 2.0284
40 3X0V FAD 2.03327
41 1XSE NDP 2.0339
42 5X68 FAD 2.04604
43 3PT9 SAH 2.06186
44 3PE2 E1B 2.07715
45 1D9I 00P 2.08333
46 5KOX RFP 2.10084
47 5KOX FAD 2.10084
48 2Z3Y F2N 2.1148
49 1GTE FAD 2.13632
50 4Z0G 5GP 2.17918
51 4LXQ FON 2.18978
52 4LXQ TYD 2.18978
53 3P9C SAH 2.1978
54 5YB7 FAD 2.23805
55 5YB7 ORN 2.23805
56 3O26 NDP 2.2508
57 2Y6Q FAD 2.26131
58 3G6K POP 2.27273
59 3G6K FAD 2.27273
60 4HXY NDP 2.28311
61 5DWQ SFG 2.29226
62 5DX0 SFG 2.29226
63 5DX1 SFG 2.29226
64 5DX8 SFG 2.29226
65 5DXA SFG 2.29226
66 2WTX VDO 2.32068
67 2WTX UDP 2.32068
68 5OVL NAP 2.33333
69 5GUD 2IT 2.33546
70 5GUD NDP 2.33546
71 3UYW TAU 2.33645
72 3G2O SAM 2.34114
73 5FTW SAH 2.34375
74 4J1Q NDP 2.37069
75 6AU6 GDP 2.38727
76 3NT6 COA 2.43902
77 5WP5 SAH 2.44399
78 6F97 FAD 2.44821
79 5TTJ FAD 2.44898
80 5JAQ NAI 2.46305
81 1RP0 AHZ 2.46479
82 5FWA J7C 2.46637
83 2V6G NAP 2.47253
84 5E1M PRO PRO LYS ARG ILE ALA 2.48963
85 5E1M SAH 2.48963
86 5CX8 TG6 2.4948
87 3MGB GHP 3MY 3FG GHP GHP OMY 3FG 2.50784
88 5VN0 FAD 2.50965
89 2XVM SAH 2.51256
90 5V7I 8Z1 2.52101
91 2JJQ SAH 2.58824
92 2R4J 13P 2.59481
93 2R4J FAD 2.59481
94 4C4A SAH 2.60116
95 3IHG FAD 2.61682
96 1HV9 COA 2.63158
97 2C5A NAD 2.63852
98 2C5A GDC 2.63852
99 1QO8 FAD 2.65018
100 2DTX BMA 2.65152
101 4E93 GUI 2.65252
102 1E5Q NDP 2.66667
103 2WYV NAD 2.68199
104 4R6W SAH 2.71318
105 4R6W PC 2.71318
106 4MO2 FDA 2.71739
107 5OVK NDP 2.73438
108 6ECT SAM 2.74669
109 1RSG FAD 2.74669
110 2VVM FAD 2.74669
111 4WAS COO 2.74725
112 4WAS NAP 2.74725
113 1H82 GZZ 2.75424
114 1H82 FAD 2.75424
115 1TAD GDP 2.77778
116 1TAD ALF 2.77778
117 5WUW NAP 2.78746
118 1YZG GDP 2.7933
119 5W7R 9Z7 2.7972
120 5W7R SAH 2.7972
121 3SMA ACO 2.7972
122 2CFC NAD 2.8
123 2H8H H8H 2.80374
124 3N2S FMN 2.81124
125 2ZFN ACO 2.82609
126 2AG5 NAD 2.84553
127 3SJU NDP 2.86738
128 5GWT SIN 2.8777
129 5GWT NAD 2.8777
130 4UCI SAM 2.89157
131 5MPT SAH 2.89855
132 2BNE U5P 2.90456
133 3CV9 VDX 2.91262
134 1BKJ FMN 2.91667
135 5O42 BGC 2.91971
136 5O42 NAD 2.91971
137 5O42 9JW 2.91971
138 6C5B SAH 2.93255
139 5MGZ SAH 2.9661
140 6BC3 SIS 2.98013
141 6BC3 COA 2.98013
142 3GWZ SAH 2.98103
143 1IY8 NAD 2.99625
144 4POO SAM 3
145 3VSE SAH 3.01508
146 1H5Q NAP 3.01887
147 1SQF SAM 3.0303
148 1JQ3 AAT 3.04054
149 2A14 SAH 3.04183
150 6D6Y SAH 3.05927
151 3VHE 42Q 3.06407
152 1U7T TDT 3.06513
153 4Z24 FAD 3.06748
154 1X1T NAD 3.07692
155 1ZGA SAH 3.08123
156 4XSU GLC 3.09278
157 4XSU UDP 3.09278
158 4P6G 2FZ 3.09735
159 2XTZ GSP 3.10734
160 5JDI NAP 3.125
161 3BMO NAP 3.125
162 5K6A NAP 3.125
163 5JCJ NAP 3.125
164 4CM9 NAP 3.125
165 5JDC NAP 3.125
166 4CM8 NAP 3.125
167 3JQ9 NAP 3.125
168 4CMI NAP 3.125
169 4CLO NAP 3.125
170 3JQB NAP 3.125
171 3JQF NAP 3.125
172 5ICE SAH 3.125
173 3JQ7 NAP 3.125
174 3BMQ NAP 3.125
175 4CM4 NAP 3.125
176 3BMN NAP 3.125
177 4CME NAP 3.125
178 4CLR NAP 3.125
179 3JQA NAP 3.125
180 3JQ8 NAP 3.125
181 3JQG NAP 3.125
182 5DJH AMP 3.125
183 3WXM GTP 3.13199
184 1HK8 DGT 3.1405
185 6EL3 NAP 3.14961
186 5TUF TDC 3.17848
187 5TUF FAD 3.17848
188 5W7K SAH 3.20513
189 3VC1 GST 3.20513
190 3VC1 SAH 3.20513
191 1QZZ SAM 3.20856
192 1XDS SAM 3.20856
193 1ZJ6 G3D 3.20856
194 1XKQ NDP 3.21429
195 4F97 VDO 3.21932
196 2BME GNP 3.22581
197 3GEG NAD 3.23887
198 4FC7 COA 3.2491
199 4FC7 NAP 3.2491
200 2VSS ACO 3.26087
201 2VSU ACO 3.27273
202 5A9A UTP 3.29218
203 3SWG EPZ 3.29412
204 1YKJ FAD 3.29949
205 5T52 NGA 3.30579
206 5T52 A2G 3.30579
207 5NUF NAD 3.31325
208 4HY1 19X 3.33333
209 3AB1 FAD 3.33333
210 4ITU NAI 3.34572
211 4ITU 1HS 3.34572
212 4EUE NAI 3.34928
213 2VZ0 NAP 3.35821
214 2VZ0 D64 3.35821
215 2WD7 NAP 3.35821
216 5NTP 98E 3.36134
217 5Z75 NAD 3.36391
218 5BN3 ADP 3.36538
219 2GDZ NAD 3.37079
220 6DEN TP9 3.37243
221 6DEN G8A 3.37243
222 6DEN FAD 3.37243
223 4XOQ F42 3.38164
224 3L9W AMP 3.38983
225 1YBH CIE 3.38983
226 4FF8 14S 3.40557
227 4EMI NAD 3.41463
228 1YQZ FAD 3.42466
229 5K4W THR 3.42679
230 5K4W NAI 3.42679
231 3KCC CMP 3.46154
232 6CI9 NAP 3.4749
233 2AF6 BRU 3.48837
234 5EOU ATP 3.49462
235 2FR1 NDP 3.49794
236 3X0D SAH 3.51145
237 3QOX SAH 3.52113
238 2YY7 NAD 3.52564
239 1YZQ GNP 3.52941
240 1I8T FAD 3.54223
241 3HBN UDP 3.5461
242 5TVJ 7LF 3.5545
243 5TVJ COA 3.5545
244 4M73 M72 3.56083
245 4M73 SAH 3.56083
246 3X01 AMP 3.56234
247 5EB4 FAD 3.57143
248 2IF8 ADP 3.58127
249 1XG5 NAP 3.58423
250 6DUB SAH 3.6036
251 3LL5 ADP 3.61446
252 3LL5 IPE 3.61446
253 4HA9 NDP 3.61446
254 3FSY SCA 3.61446
255 3UZO GLU 3.63128
256 3UZO PLP 3.63128
257 4IZC 1GZ 3.63636
258 4KIB SAH 3.64146
259 3NUG NAD 3.64372
260 5MLR NAP 3.64964
261 5MLR GRQ 3.64964
262 4XZ3 COA 3.66379
263 4Q9N NAI 3.69128
264 3FPF MTA 3.69128
265 3FPF TNA 3.69128
266 1FP2 SAH 3.69318
267 6GKV SAH 3.7037
268 3IA4 NDP 3.7037
269 5UIU 8CG 3.71517
270 5TS5 FAD 3.71901
271 3N0S ACO 3.73134
272 3CT5 NAG NAG NAG 3.77358
273 5KOK R9T 3.77834
274 5KOK SAH 3.77834
275 5KOK S9T 3.77834
276 4XO8 KGM 3.79747
277 4LWP SAH 3.80435
278 1ZEM NAD 3.81679
279 4AP3 NAP 3.82514
280 4AP3 FAD 3.82514
281 5W7M SAH 3.84615
282 5E9W SAH 3.84615
283 5H81 NAP 3.85604
284 1EP2 ORO 3.85852
285 4V3C C 3.86598
286 3A28 NAD 3.87597
287 3AFN NAP 3.87597
288 4NBW NAD 3.89105
289 2QZS ADP 3.91753
290 2QZS 250 3.91753
291 2QZS GLC 3.91753
292 3WCS MAN NAG GAL 3.93701
293 1V35 NAI 3.95137
294 2BGM NAJ 3.95683
295 4M0R 644 3.95778
296 1W6U NAP 3.97351
297 1W8D NAP 3.97351
298 1W73 NAP 3.97351
299 5N5D SAM 3.9823
300 5KBF CMP 3.98671
301 4ZDC CO8 4
302 5JCA FAD 4.00844
303 5JCA NDP 4.00844
304 5L53 NAP 4.01235
305 3A4T SFG 4.0146
306 4YLG GDP 4.04624
307 3B6O TMP 4.04858
308 1VL8 NAP 4.11985
309 3OIG NAD 4.13534
310 1YVD GNP 4.14201
311 4FWE FAD 4.14573
312 1ZGD NAP 4.16667
313 2C77 GNP 4.19753
314 1N4K I3P 4.19948
315 5GWX SAR 4.22535
316 5GWX SAM 4.22535
317 1JH7 UVC 4.2328
318 1CS4 GSP 4.24528
319 1SVK ALF GDP 4.24929
320 4A6D SAM 4.24929
321 5G4J EXT 4.26009
322 3ZV6 NAD 4.27046
323 3ZV6 4HB 4.27046
324 3SBD GNP 4.27807
325 3HB5 NAP 4.28135
326 3OZ2 FAD 4.28212
327 6F7L FAD 4.29864
328 4YRY NAD 4.34783
329 4YRY FAD 4.34783
330 3TKY SAH 4.34783
331 1YNH SUO 4.36681
332 1ERB ETR 4.37158
333 1JA9 NDP 4.37956
334 4BAE RWX 4.39024
335 5CX6 CDP 4.39716
336 2EWM NAD 4.41767
337 5FBN 5WF 4.42804
338 6ECU SAH 4.43038
339 4URL XAM 4.4335
340 5THZ SAH 4.44444
341 5THY SAH 4.44444
342 1T36 ORN 4.45026
343 5FEU NAP 4.46735
344 5WP4 SAH 4.48065
345 5VEG FMN 4.49438
346 1Y3A GDP 4.55927
347 2A19 ANP 4.57143
348 5JFL NAD 4.58015
349 1Z0A GDP 4.5977
350 5L4L 7OX 4.60526
351 5L4L NAP 4.60526
352 2AE2 NAP 4.61538
353 2AE2 PTO 4.61538
354 4KRI SAH 4.61894
355 1IBR GNP 4.62963
356 3TN7 NJP 4.66926
357 3E1T FAD 4.6875
358 1XHL NDP 4.7138
359 3IX9 NDP 4.73684
360 1RZU ADP 4.74227
361 1TDF FAD 4.74684
362 4RPL FAD 4.7619
363 4RPL 3UC 4.7619
364 3DNT ATP 4.77273
365 4A2A ATP 4.77327
366 5MW4 5JU 4.79042
367 1VQW FAD 4.814
368 3QWI CUE 4.81482
369 3QWI NAP 4.81482
370 5VC5 96M 4.84429
371 3DOE GTP 4.84848
372 1UZN NAP 4.8583
373 3H4V NAP 4.86111
374 3H4V DVP 4.86111
375 4EMV 0R9 4.86726
376 5UR0 NAD 4.87106
377 4I5I NAD 4.87805
378 1VGR COA 4.91803
379 2GVC FAD 4.9217
380 2GV8 FAD 4.9217
381 5NMX FAD 4.94118
382 4BTV RB3 4.94186
383 3PFG SAM 4.94297
384 3PFG TLO 4.94297
385 5YF1 SFG 4.97238
386 1MR3 G3D 4.97238
387 1NFQ NAI 5
388 3TYZ XHP 5
389 3TYZ PAB 5
390 1OAA OAA 5.01931
391 2IID PHE 5.02008
392 2IID FAD 5.02008
393 3BXO SAM 5.02092
394 3OU2 SAH 5.04587
395 5GM1 SAH 5.05051
396 6BSX GDP 5.05618
397 6BSX E7S 5.05618
398 5FFF 5XC 5.05837
399 5FFF NAP 5.05837
400 5HDJ FMN 5.05837
401 5OGX FAD 5.05952
402 1WMA NDP 5.07246
403 1WMA AB3 5.07246
404 2Q2V NAD 5.09804
405 1LCK GLU GLY GLN PTR GLN PRO GLN PRO ALA 5.14286
406 1WK8 VMS 5.15464
407 5X62 SAH 5.17241
408 4NBU NAI 5.2
409 1BC5 SAH 5.20446
410 1N5D NDP 5.20833
411 1VKO NAD 5.21415
412 3CAQ NDP 5.21472
413 5W8X UDP 5.2356
414 4REP FAD 5.25253
415 5JE0 SAH 5.26316
416 5JE0 AZ8 5.26316
417 3GU3 SAH 5.28169
418 5F8F SFG 5.30504
419 1SQK ADP 5.30504
420 5Z2L NDP 5.30612
421 1T9D 1MM 5.31758
422 1T9D PYD 5.31758
423 1T9D P25 5.31758
424 1T9D FAD 5.31758
425 6E8I PTR 5.32544
426 2FXU ATP 5.33333
427 2A42 ATP 5.33333
428 1REO FAD 5.34979
429 3VMF GTP 5.36193
430 4Q0P 0MK 5.38462
431 1BDB NAD 5.41516
432 5H5O PCG 5.42636
433 3AQV TAK 5.43478
434 4ZGS NAD 5.44041
435 3ABI NAD 5.47945
436 3TTZ 07N 5.55556
437 5ULP KB1 5.59701
438 1USF NAP 5.61798
439 1USF FMN 5.61798
440 3R51 MMA 5.625
441 5J62 FMN 5.62771
442 4M8E 29V 5.62771
443 5HW4 SAM 5.64516
444 4URF NAD 5.64516
445 1RLZ NAD 5.69106
446 4O1M NAD 5.71429
447 2A5F GTP 5.71429
448 3BGD SAH 5.76923
449 3BGD PM6 5.76923
450 1Y4Z PCI 5.77778
451 3OID NDP 5.81395
452 4ZVI 4S4 5.83554
453 1FK8 NAD 5.83658
454 1PI5 SM2 5.86592
455 1W0H AMP 5.88235
456 1EK0 GNP 5.88235
457 6GNF ADP 5.88235
458 4P8O 883 5.88235
459 1R2Q GNP 5.88235
460 6GNF GLC 5.88235
461 2JHP SAH 5.90062
462 3MJH GTP 5.95238
463 5YJI SAH 5.98592
464 5YJI 8WO 5.98592
465 3G89 SAM 6.0241
466 4QED NAP 6.04839
467 3GBR PRP 6.08696
468 4MZU COA 6.08974
469 1PNO NAP 6.11111
470 1E6W NAD 6.15385
471 2WA2 SAM 6.15942
472 4O0L NDP 6.18182
473 1UAY ADN 6.19835
474 3VZS CAA 6.22568
475 3VZS NAP 6.22568
476 5EOB 5QQ 6.26959
477 3MB5 SAM 6.27451
478 4PNE SAH 6.29139
479 3RJ5 NAD 6.29921
480 4FN4 NAD 6.29921
481 5ZQY AR6 6.30372
482 2OOR TXP 6.32184
483 2Q46 NAP 6.32411
484 3T7S SAM 6.34328
485 1ZK4 NAP 6.3745
486 2ZTS ADP 6.3745
487 3LCC SAH 6.38298
488 1Z6Z NAP 6.38298
489 5A89 FMN 6.41026
490 3O7W SAM 6.46258
491 5EPO NAP 6.48855
492 5A04 BGC 6.48968
493 5XKT GNP 6.5
494 4GGL CJC 6.51163
495 1GEE NAD 6.51341
496 4D79 ATP 6.52174
497 2B4Q NAP 6.52174
498 5ERG SAM 6.52742
499 4BLW SAH 6.57439
500 4BJZ P3A 6.60377
501 4BJZ FAD 6.60377
502 3OA2 NAD 6.60377
503 1PN0 FAD 6.61654
504 1PN0 IPH 6.61654
505 1NNU TCT 6.66667
506 1NNU NAD 6.66667
507 5K7U SAM 6.66667
508 2A0S BIO 6.66667
509 5YW5 ADE 6.70391
510 1G55 SAH 6.70554
511 3NC9 TR3 6.70927
512 2RGJ FAD 6.71642
513 4YAC NAI 6.73401
514 4KS7 X4Z 6.84932
515 2ODE ALF GDP 6.85714
516 5M58 SAH 6.95652
517 3TLJ SAH 6.97051
518 3ICS COA 6.97279
519 6CIT GNP 6.99301
520 4M37 SAH 6.99708
521 6GQM F8H 7.0122
522 5U8U FAD 7.06861
523 5IL1 SAM 7.07547
524 2IVD FAD 7.11297
525 1G0H IPD 7.14286
526 5EEH SAH 7.18085
527 2RH4 EMO 7.22022
528 1S17 GNR 7.22222
529 3A4V NAD 7.25552
530 3A4V PYR 7.25552
531 2JAH NDP 7.28745
532 2JAP NDP 7.28745
533 1GP6 DH2 7.30337
534 1GP6 SIN 7.30337
535 1GP6 QUE 7.30337
536 2NPX FAD 7.38255
537 3O7J 2AL 7.40741
538 1W0J ADP BEF 7.45098
539 1F5V FMN 7.5
540 5L4S NAP 7.54717
541 5L4S 6KX 7.54717
542 3SM2 478 7.57576
543 2PD4 DCN 7.63636
544 2PD4 NAD 7.63636
545 4PO2 ASN ARG LEU LEU LEU THR GLY 7.65957
546 3RHZ UDP 7.66962
547 5HJM MTA 7.67045
548 2PWY SAH 7.75194
549 5WBF LAC 7.77778
550 1Q7B NAP 7.78689
551 3U4C NDP 7.82918
552 4Z4P SAH 7.83133
553 3WBF API 7.86885
554 4FZV SAM 7.94979
555 5GT9 NAP 7.98479
556 1O5I NAD 8.03213
557 4HI0 GDP 8.0402
558 5H20 GLC 8.10811
559 5WQP NCA 8.11966
560 5WQP NAP 8.11966
561 1FQK GDP 8.16327
562 2BD0 NAP 8.19672
563 1VL0 NAI 8.21918
564 2GCO GNP 8.45771
565 2XTN GTP 8.54701
566 3KO8 NAD 8.65385
567 3WMX NAD 8.65922
568 3F8D FAD 8.66873
569 2ZE7 DST 8.69565
570 2ZE7 AMP 8.69565
571 3MQ2 SAH 8.7156
572 3RKR NAP 8.77863
573 1G6O ADP 8.78788
574 5O98 NAP 8.83281
575 4Y9D NAI 8.85246
576 1FWM CB3 9.09091
577 1ZPR CB3 9.09091
578 5E8J SAH 9.09091
579 1UAD GNP 9.09091
580 5BSZ SAH 9.2
581 2V2V V12 9.22509
582 2AQX ATP 9.34256
583 4K81 GTP 9.35672
584 2AMT 1AA 9.43396
585 4NEC SAH 9.4697
586 2OYS FMN 9.50413
587 1SQS TLA 9.50413
588 3UIM ANP 9.5092
589 6G9I CXX 9.52381
590 1FQJ GDP 9.52381
591 2J59 GTP 9.52381
592 5E5U MLT 9.54774
593 1RJD SAM 9.58084
594 3H8V ATP 9.58904
595 3ELW GP3 9.66667
596 3ELW SAM 9.66667
597 5L2R LMR 9.76821
598 5ZW3 SAH 9.77778
599 3FPZ AHZ 9.81595
600 4CQM NAP 9.83607
601 3GZ8 APR 9.87654
602 1AE1 NAP 9.89011
603 1E5F PLP 9.90099
604 1JAY F42 9.90566
605 5XNC MTA 9.97305
606 4NBT NAD 10
607 5TQZ GLC 10
608 5LAU AR6 10.0962
609 4OBW SAM 10.1167
610 3ZLR X0B 10.1266
611 2R40 20E 10.2662
612 3RZ3 U94 10.3825
613 1SG4 CO8 10.3846
614 5FA8 SAM 10.559
615 1VE3 SAM 10.5727
616 3V1U NAD 10.6061
617 5THQ NDP 10.6618
618 2PXX SAH 10.6977
619 5JGL SAM 10.7266
620 1KZN CBN 10.7317
621 1Z3C SA8 10.7383
622 6G1P CIT 10.8571
623 1GOT GDP 10.9589
624 2YVJ NAI 11.0092
625 1AV5 AP2 11.1111
626 5RHN 8BR 11.3043
627 3U4L ATP 11.4286
628 2CDU FAD 11.5044
629 4ZI2 GNP 11.5789
630 1Z0K GTP 11.5942
631 2W83 GTP 11.6883
632 6BXI ANP 11.7117
633 5EYK 5U5 11.8644
634 5N6C NAD 12
635 5ZZ6 NAD 12.0192
636 1KYZ SAH 12.0548
637 1GEG NAD 12.5
638 2WSB NAD 12.5984
639 3FRH SAH 12.6482
640 3SJ7 NDP 13.0952
641 1SNY NAP 13.1086
642 2HMT NAI 13.1944
643 2Q37 3AL 13.2597
644 4GQB 0XU 13.6364
645 1T3Q FAD 13.6905
646 5L95 AMP 13.75
647 1EJ0 SAM 13.8889
648 1WVG APR 13.9276
649 3Q87 SAM 14.1176
650 4M38 SAH 14.2857
651 3KMT SAH 14.2857
652 5CFT 51G 14.5946
653 5CFT APC 14.5946
654 5LU5 M7P 14.7208
655 5FA5 MTA 15
656 2EFX NFA 15.7025
657 1MH1 GNP 16.129
658 3N8K D1X 16.2791
659 1A5V Y3 16.4557
660 1TU3 GNP 16.4557
661 3TE4 ACO 16.7442
662 2UYQ SAM 17.7419
663 4QTU SAM 17.7885
664 2CJF RP4 17.8344
665 5ODQ FAD 17.8694
666 1LSS NAD 18.5714
667 5N53 8NB 19.4872
668 4GUT FAD 20.9677
669 4HSU FAD 20.9677
670 4GUS FAD 20.9677
671 1J2J GTP 22.2222
672 2PK3 A2R 22.4299
673 4LHW GNP 24.7126
674 2OM2 GDP 25
675 2D7C GTP 26.1905
676 1NBU PH2 26.8908
677 2ZFZ ARG 27.8481
678 4EFH ADP 28.7879
679 2PAV ATP 31.25
680 5UWP GNP 31.5789
Pocket No.: 6; Query (leader) PDB : 4LHD; Ligand: GLY; Similar sites found with APoc: 48
This union binding pocket(no: 6) in the query (biounit: 4lhd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 5UIJ TYD 1.97531
2 4K26 NDP 2.17391
3 2FES 3SP 2.3166
4 3VXE DPN PRO ARG 2.3166
5 4G31 0WH 2.34114
6 1U7T NAD 3.06513
7 3VVY ET 3.09278
8 3SXS PP2 3.35821
9 2DKN NAI 3.52941
10 4EWH T77 3.63636
11 4D4U FUC GAL NAG 3.80952
12 3AI7 TPP 3.85078
13 4M52 M52 3.86266
14 5YSS NAD 3.90625
15 1LVK MNT BEF 3.93701
16 5O0B 9FE 4.32099
17 3PP0 03Q 4.43787
18 6B74 BEN 4.52675
19 5EXK MET 4.53172
20 2RDT 2RD 4.65116
21 2RDT FMN 4.65116
22 2OFV 242 4.69314
23 2F01 BTQ 4.72441
24 2F01 BTN 4.72441
25 4DQL NAP 4.83461
26 4DQL FAD 4.83461
27 1A27 NAP 4.84429
28 5H2U 1N1 4.86891
29 3HQP ATP 5.01002
30 6ES0 BW8 5.04732
31 3G5D 1N1 5.24476
32 1SAY PYR 5.26316
33 1EDO NAP 5.7377
34 1ZHS NAG NAG BMA MAN MAN 6.19469
35 4XJC TTP 6.21469
36 3K9W 4PS 6.41711
37 3K9W ADE 6.41711
38 5NGZ 2BG 6.59898
39 2DPM SAM 6.69014
40 4C2C ALA VAL PRO ALA 6.72646
41 4XGX ADP 7.05882
42 6GCB GSH 7.07692
43 1VHT BA3 7.79817
44 1KYQ NAD 8.39416
45 1VJY 460 8.58086
46 5B4T NAD 10.3846
47 5B4T 3HR 10.3846
48 4CL6 7SB 11.1111
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