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Receptor
PDB id Resolution Class Description Source Keywords
4P86 1.93 Å NON-ENZYME: OTHER STRUCTURE OF PYRR PROTEIN FROM BACILLUS SUBTILIS WITH GMP BACILLUS SUBTILIS RNA BINDING PROTEINS TRANSFERASE
Ref.: EVOLUTION OF OLIGOMERIC STATE THROUGH ALLOSTERIC PA THAT MIMIC LIGAND BINDING. SCIENCE V. 346 54346 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
5GP B:202;
B:201;
A:201;
C:201;
C:202;
D:201;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
363.221 C10 H14 N5 O8 P c1nc2...
GOL A:202;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4P86 1.93 Å NON-ENZYME: OTHER STRUCTURE OF PYRR PROTEIN FROM BACILLUS SUBTILIS WITH GMP BACILLUS SUBTILIS RNA BINDING PROTEINS TRANSFERASE
Ref.: EVOLUTION OF OLIGOMERIC STATE THROUGH ALLOSTERIC PA THAT MIMIC LIGAND BINDING. SCIENCE V. 346 54346 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4P86 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 4P86 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
2 4P83 - U5P C9 H13 N2 O9 P C1=CN(C(=O....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 4P86 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
2 4P83 - U5P C9 H13 N2 O9 P C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 5GP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 G 1 1
2 5GP 1 1
3 GDP 0.828947 0.986486
4 GP3 0.815789 0.960526
5 GP2 0.805195 0.948052
6 GTP 0.797468 0.986486
7 GNH 0.794872 0.973333
8 G2P 0.777778 0.948052
9 GMV 0.775 0.960526
10 G1R 0.765432 0.973333
11 GCP 0.765432 0.960526
12 GAV 0.759036 0.948052
13 GSP 0.756098 0.935897
14 GNP 0.756098 0.960526
15 9GM 0.756098 0.960526
16 ALF 5GP 0.753086 0.9
17 GMP 0.732394 0.866667
18 GPG 0.724138 0.948052
19 G2R 0.712644 0.948052
20 ALF GDP 0.701149 0.9
21 GDP ALF 0.701149 0.9
22 GDP AF3 0.701149 0.9
23 GKE 0.692308 0.948052
24 Y9Z 0.692308 0.890244
25 GDC 0.692308 0.948052
26 GDD 0.692308 0.948052
27 YGP 0.681319 0.9125
28 G3A 0.677419 0.960526
29 G5P 0.670213 0.960526
30 GFB 0.666667 0.948052
31 GDR 0.666667 0.948052
32 GTG 0.666667 0.924051
33 6CK 0.659574 0.924051
34 3GP 0.65 0.959459
35 G G 0.648936 0.960526
36 GKD 0.645833 0.948052
37 JB2 0.645833 0.948052
38 GDX 0.639175 0.960526
39 GPD 0.639175 0.9125
40 GDP 7MG 0.635417 0.923077
41 G3D 0.617977 0.972973
42 U2G 0.617647 0.924051
43 2GP 0.609756 0.946667
44 IMP 0.609756 0.972603
45 JB3 0.607843 0.935897
46 CG2 0.605769 0.924051
47 G4P 0.604396 0.972973
48 DGP 0.60241 0.922078
49 DG 0.60241 0.922078
50 FEG 0.601942 0.890244
51 NGD 0.601942 0.948052
52 ZGP 0.596154 0.879518
53 0O2 0.595745 0.972973
54 2MD 0.584906 0.879518
55 G7M 0.583333 0.960526
56 CAG 0.583333 0.869048
57 G A A A 0.579439 0.935065
58 A G 0.579439 0.947368
59 U A G G 0.574074 0.947368
60 MGD 0.568807 0.879518
61 DBG 0.566372 0.935897
62 PGD 0.5625 0.9125
63 MD1 0.5625 0.879518
64 P2G 0.55814 0.894737
65 GCP G 0.556701 0.933333
66 FE9 0.553571 0.784946
67 P1G 0.545455 0.883117
68 GH3 0.542553 0.96
69 TPG 0.53913 0.829545
70 GPX 0.53125 0.933333
71 DGI 0.527473 0.910256
72 G1R G1R 0.525862 0.911392
73 G U 0.522936 0.911392
74 PGD O 0.521368 0.83908
75 DGT 0.521277 0.910256
76 G4M 0.520325 0.869048
77 AKW 0.513761 0.878049
78 G C 0.513514 0.911392
79 93A 0.511364 0.821429
80 IDP 0.505495 0.959459
81 MGQ 0.505155 0.948052
82 C2R 0.5 0.893333
83 A 0.5 0.905405
84 AMZ 0.5 0.905405
85 BGO 0.5 0.911392
86 AMP 0.5 0.905405
87 AIR 0.493671 0.890411
88 MGV 0.49 0.901235
89 SGP 0.488889 0.8375
90 NIA 0.488095 0.8375
91 GPC 0.474138 0.890244
92 G G G RPC 0.473684 0.886076
93 GGM 0.473684 0.888889
94 71V 0.47191 0.85
95 APC G U 0.470085 0.897436
96 R5I 0.46875 0.933333
97 R7I 0.46875 0.933333
98 MGP 0.46875 0.948052
99 35G 0.468085 0.945946
100 PCG 0.468085 0.945946
101 C2E 0.468085 0.933333
102 G1G 0.466102 0.9125
103 AAM 0.465909 0.905405
104 RMB 0.465909 0.813333
105 FAI 0.465909 0.905405
106 7RA 0.465909 0.918919
107 1RB 0.465116 0.824324
108 6G0 0.463918 0.948052
109 5GP 5GP 0.463158 0.894737
110 G G G C 0.462185 0.924051
111 RBZ 0.45977 0.815789
112 UCG 0.459016 0.923077
113 A G C C 0.458333 0.923077
114 DG DG 0.456311 0.876543
115 G U34 0.45614 0.9
116 IMO 0.449438 0.866667
117 A G U 0.446154 0.9
118 G C C C 0.443548 0.935897
119 IRN 0.443038 0.808219
120 PMO 0.43956 0.792208
121 7RP 0.438202 0.864865
122 GTA 0.436364 0.924051
123 JLN 0.433333 0.88
124 P2P 0.433333 0.842105
125 A G U U 0.42963 0.9
126 XMP 0.428571 0.907895
127 PGS 0.425532 0.804878
128 RVP 0.423529 0.84
129 G2Q 0.423077 0.948052
130 ADP 0.419355 0.906667
131 ABM 0.417582 0.857143
132 A2D 0.417582 0.881579
133 PRT 0.416667 0.945946
134 GUO 0.415842 0.932432
135 AT4 0.414894 0.871795
136 CA0 0.410526 0.883117
137 2SA 0.41 0.871795
138 1YD 0.409091 0.933333
139 4BW 0.409091 0.933333
140 A12 0.408602 0.871795
141 AP2 0.408602 0.871795
142 BA3 0.408602 0.881579
143 6C6 0.408163 0.825
144 25A 0.407767 0.906667
145 NOS 0.406977 0.813333
146 HEJ 0.40625 0.906667
147 ATP 0.40625 0.906667
148 AP5 0.404255 0.881579
149 B4P 0.404255 0.881579
150 ACQ 0.40404 0.883117
151 6IA 0.40404 0.785714
152 ANP 0.40404 0.883117
153 CGP 0.403361 0.878049
154 APC 0.402062 0.871795
155 3ZE 0.402062 0.871795
156 5FA 0.402062 0.906667
157 AQP 0.402062 0.906667
158 N6P 0.4 0.853333
159 AN2 0.4 0.894737
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 269
This union binding pocket(no: 1) in the query (biounit: 4p86.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 2FXV 5GP None
2 1QAN SAH None
3 6BYF CIT None
4 1BCJ NGA None
5 4GV8 DUP None
6 2YNC YNC 1.63934
7 5C9P FUC 1.63934
8 2WPF WPF 2.18579
9 2MBR FAD 2.18579
10 2MBR EPU 2.18579
11 2R3A SAM 2.18579
12 1Q23 FUA 2.18579
13 6BOX SAH 2.18579
14 1O5O U5P 2.73224
15 2E5A LAQ 2.73224
16 2VL8 CTS 2.73224
17 2VL8 UDP 2.73224
18 1DL5 SAH 2.73224
19 2CDU FAD 2.73224
20 2RCU BUJ 2.73224
21 3A4T SFG 2.73224
22 2AAZ UMP 2.73224
23 3LXK MI1 2.73224
24 3AFN NAP 2.73224
25 3QWI NAP 2.73224
26 1SVK ALF GDP 2.73224
27 1NW5 SAM 2.73224
28 3QDV NDG 2.7972
29 5UBG PRT 3.27869
30 3MB5 SAM 3.27869
31 2HNK SAH 3.27869
32 2A9W UMP 3.27869
33 2UUU FAD 3.27869
34 3W2E FAD 3.27869
35 3W2E NAD 3.27869
36 2UUU PL3 3.27869
37 3F81 STT 3.27869
38 6CDZ UMC 3.27869
39 1JG0 UMP 3.27869
40 4Z24 FAD 3.27869
41 6CDZ UMP 3.27869
42 1AXW UMP 3.27869
43 1I00 D16 3.27869
44 1I00 UMP 3.27869
45 1NCE UMP 3.27869
46 4ISK UMP 3.27869
47 1TSD UMP 3.27869
48 3OU2 SAH 3.27869
49 1ZPR UMP 3.27869
50 1WY7 SAH 3.27869
51 4C2V YJA 3.27869
52 4FZV SAM 3.27869
53 1SYN UMP 3.27869
54 6C2Z P1T 3.27869
55 1TLC DGP 3.27869
56 1I8T FAD 3.27869
57 4UCI SAM 3.27869
58 3THR C2F 3.27869
59 5Z2L NDP 3.27869
60 4YNM SAM 3.27869
61 4WQQ MAN 3.5461
62 3HVJ 705 3.82514
63 2PWY SAH 3.82514
64 5KVA SAM 3.82514
65 2CXG GLC GLC 3.82514
66 1J0D 5PA 3.82514
67 4AUT FAD 3.82514
68 2AE2 NAP 3.82514
69 2AE2 PTO 3.82514
70 1V59 FAD 3.82514
71 2OGA PGU 3.82514
72 5XK9 GST 3.82514
73 5XK9 DMA 3.82514
74 1X1T NAD 3.82514
75 5THQ NDP 3.82514
76 1F28 UMP 3.82514
77 1XG5 NAP 3.82514
78 5G3U FDA 3.82514
79 1AE1 NAP 3.82514
80 5A89 FMN 3.84615
81 1S8F GDP 3.9548
82 4QVB F42 4.08163
83 3P7G MAN 4.10959
84 1XTT U5P 4.37158
85 5AE2 FAD 4.37158
86 5AE2 FYC 4.37158
87 1XCL SAH 4.37158
88 1HFU NAG NDG 4.37158
89 1P1C SAH 4.37158
90 5ERG SAM 4.37158
91 5UQK U2F 4.37158
92 3DR4 G4M 4.37158
93 3UR0 SVR 4.37158
94 2BNE U5P 4.37158
95 2GQT FAD 4.37158
96 2Q2V NAD 4.37158
97 1SL6 GAL NDG FUC 4.37158
98 1RDL MMA 4.42478
99 6BSX GDP 4.49438
100 6BSX E7S 4.49438
101 4WOH 4NP 4.81928
102 2Q4W FAD 4.91803
103 1FIQ FAD 4.91803
104 1I9G SAM 4.91803
105 4YSW NAI 4.91803
106 4YSW FAD 4.91803
107 3B8X G4M 4.91803
108 2F5Z FAD 4.91803
109 3RNM FAD 4.91803
110 3B6R CRN 4.91803
111 3NRR D16 4.91803
112 3NRR UMP 4.91803
113 3AFH GSU 4.91803
114 3DUW SAH 4.91803
115 1MDZ PLP 4.91803
116 1MDZ DCS 4.91803
117 3WH2 FLC 5.44218
118 3W8X FAD 5.46448
119 3W8X FTK 5.46448
120 4ZAH T5K 5.46448
121 4OSP NAP 5.46448
122 1XSE NDP 5.46448
123 4YKG FAD 5.46448
124 4G6I RS3 5.46448
125 1FL2 FAD 5.46448
126 1E6E FAD 5.46875
127 3NRZ FAD 5.4878
128 2DTX BMA 5.68182
129 3LN9 FLC 5.7554
130 4JLS 3ZE 5.92105
131 2JKY 5GP 6.01093
132 4POO SAM 6.01093
133 4XUC SAM 6.01093
134 4XUC 43G 6.01093
135 4YMH SAH 6.01093
136 3LXD FAD 6.01093
137 1QNF FAD 6.01093
138 4R57 ACO 6.25
139 3LAD FAD 6.55738
140 4M37 SAH 6.55738
141 5YSS NAD 6.55738
142 5OCQ CIT 6.55738
143 1NJF AGS 6.55738
144 4WNK 453 6.55738
145 1VRP IOM 6.55738
146 4GKV NAD 6.55738
147 5G5G FAD 7.10383
148 1N62 FAD 7.10383
149 5G5G MCN 7.10383
150 3GRU AMP 7.10383
151 3VC3 C6P 7.10383
152 3RS8 ALA TRP LEU PHE GLU ALA 7.10383
153 3SSO SAH 7.10383
154 1F0X FAD 7.10383
155 2J62 GSZ 7.10383
156 3P48 DUP 7.48299
157 1LH0 PRP 7.65027
158 3C3Y SAH 7.65027
159 1XKQ NDP 7.65027
160 5N5D SAM 7.65027
161 4U0I 0LI 7.65027
162 1XHL NDP 7.65027
163 1XHC FAD 7.65027
164 1LH0 ORO 7.65027
165 3W6X HZP 7.65027
166 5OVK NDP 7.65027
167 5FI3 NAP 7.65027
168 1T3Q FAD 7.7381
169 1JZN BGC GAL 8.14815
170 1QB7 ADE 8.19672
171 1FFU FAD 8.19672
172 1QHO MAL 8.19672
173 4JB1 FAD 8.19672
174 4JB1 NAP 8.19672
175 1E8G FCR 8.19672
176 1J3I UMP 8.19672
177 1E8G FAD 8.19672
178 3ZIU LSS 8.19672
179 1AIQ UMP 8.19672
180 2QQ0 TMP 8.19672
181 2QQ0 ADP 8.19672
182 2QQ0 ANP 8.19672
183 1P0F NAP 8.19672
184 4Q9M FPP 8.19672
185 1MZV AMP 8.74317
186 3ZEI AWH 8.74317
187 2WE0 UMP 8.74317
188 4Z87 5GP 8.74317
189 4EIL UMP 8.74317
190 3WLE NAD 8.74317
191 6AMI TRP 8.74317
192 4Z87 GDP 8.74317
193 5MW4 5JU 8.74317
194 1WA5 GTP 8.74317
195 4CFP NAG AMU NAG AMV 8.74317
196 3MBI HSX 9.28962
197 5NM7 GLY 9.28962
198 2BW7 ECS 9.28962
199 6BMN PAP 9.28962
200 4ZOH FAD 9.52381
201 5GVR LMR 9.83607
202 1D6S PLP MET 9.83607
203 1D6S MET PLP 9.83607
204 5WS9 AMP 9.83607
205 3S1S SAH 10.3825
206 2BVL GLC 10.3825
207 2BVL UDP 10.3825
208 3AQV TAK 10.3825
209 1U3G ADP 10.3825
210 5JCA FAD 10.3825
211 1U3G THF 10.3825
212 3HRD FAD 10.625
213 1COY FAD 10.929
214 4EMI FAD 10.929
215 1RHC F42 ACN 10.929
216 3RI1 3RH 10.929
217 1R18 SAH 11.4754
218 5ZW3 SAH 11.4754
219 1Q1R FAD 11.4754
220 1X54 4AD 11.4754
221 1P4A PCP 12.0219
222 1RM6 FAD 12.0219
223 1WLJ U5P 12.0219
224 4P8K FAD 12.5683
225 4P8K 38C 12.5683
226 5GZZ GSH 12.5683
227 5Y6Q FAD 12.963
228 4KCT FDP 13.1148
229 3RC3 ANP 13.1148
230 1JG3 ADN 13.6612
231 1UPF URF 13.6612
232 1I1N SAH 13.6612
233 1DJN ADP 13.6612
234 1O94 ADP 13.6612
235 1DQN IMU 14.2077
236 4ONC 40B 14.2077
237 1V97 FAD 14.2077
238 4KFU ACP 14.7541
239 2BES RES 15.1163
240 5TUF FAD 15.3005
241 3HQP FDP 15.3005
242 1PR9 NAP 15.3005
243 4IP7 FBP 15.3005
244 1U8Z GDP 15.4762
245 1U3U NAD 15.847
246 1U3U BNF 15.847
247 4B2D FBP 16.3934
248 1P19 IMP 19.6721
249 5OJI ISN 19.6721
250 5OJI NAP 19.6721
251 4OOP DUP 19.8795
252 4RHY 3QG 20.2186
253 5VJN ADE 20.8556
254 5VJN IR8 20.8556
255 2PS1 ORO 21.3115
256 2PS1 PRP 21.3115
257 2YVJ FAD 21.8579
258 6APV 3L4 22.9508
259 6FCH PRP 28.6517
260 1QK3 5GP 32.2404
261 1L1Q 9DA 32.2404
262 5YW5 ADE 32.4022
263 3ACC 5GP 34.2541
264 1PZM 5GP 34.4262
265 1BZY IMU 37.1585
266 2JBH 5GP 39.3443
267 1HGX 5GP 39.8907
268 3OZG SSI 39.8907
269 6AR9 3L4 43.7158
Pocket No.: 2; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 34
This union binding pocket(no: 2) in the query (biounit: 4p86.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1A78 TDG None
2 2P4T NAP None
3 5LNQ CAA 1.63934
4 4ZFL 4NK 2.18579
5 1USF FMN 2.80899
6 6C8X BVR 3.0303
7 3R7F CP 3.27869
8 5CX6 CDP 3.82514
9 5HGZ MLA 3.82514
10 5W4W 9WG 3.82514
11 5YSI NCA 3.94737
12 6D61 4AA 4.37158
13 4KS7 X4Z 4.91803
14 3UEC ALA ARG TPO LYS 5.47945
15 5VN0 NAI 6.01093
16 1KQP ADJ 6.01093
17 2E4G TRP 6.01093
18 2YI0 YI0 6.01093
19 4DPL NAP 6.55738
20 1GG6 APL 7.2165
21 3A7R LAQ 7.65027
22 2Q7D ANP 7.80347
23 1XF1 CIT 8.19672
24 3ZUY TCH 8.74317
25 3TY3 GGG 9.28962
26 3K8D KDO 10.3825
27 3HRD MCN 10.625
28 1M4I PAP 11.6022
29 1M4I COA 11.6022
30 1M4I KAN 11.6022
31 1JQ3 AAT 12.0219
32 1DCP HBI 15.3846
33 2GNK ATP 16.0714
34 3DUV KDO 19.1257
Pocket No.: 3; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 35
This union binding pocket(no: 3) in the query (biounit: 4p86.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 6FX2 FUC C4W NAG BMA MAN NAG GAL None
2 2O07 SPD None
3 2O07 MTA None
4 1SLT NDG GAL None
5 6EL3 NAP 2.73224
6 1JXZ BCA 2.73224
7 6CQF F97 2.73224
8 1USF NAP 2.80899
9 4N9I PCG 3.27869
10 4GLL NAD 3.27869
11 3WUD GLC GAL 3.67647
12 1V3S ATP 4.31034
13 1TLG GAL 4.8
14 6GN6 MAL 4.91803
15 2YBQ UP2 5.46448
16 4U60 SIA GAL NGA 6.01093
17 3KCC CMP 6.55738
18 1VJY 460 7.65027
19 2I7C AAT 7.65027
20 5EES NAP 7.65027
21 2PT9 2MH 7.65027
22 5E5U MLT 8.19672
23 2H7C COA 8.19672
24 3QTP 2PG 8.74317
25 3F3E LEU 9.83607
26 2WEL K88 10
27 6FL8 ADP 10.929
28 6FL8 TIY 10.929
29 3KRB NAP 12.0219
30 2FHK MFN 12.5683
31 4BKS X6C 13.4615
32 5XNC MTA 13.6612
33 1T36 ADP 16.3934
34 4YRY FAD 19.1257
35 3VPB ADP 23.2143
Pocket No.: 4; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 88
This union binding pocket(no: 4) in the query (biounit: 4p86.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 1YQS BSA 2.18579
2 3T7S SAM 2.18579
3 5VJE GOS 2.73224
4 3CL5 SIO 2.73224
5 1FGX U5P 3.27869
6 3NTA FAD 3.27869
7 1HG4 LPP 3.27869
8 1NFS DED 3.27869
9 5TCI MLI 3.27869
10 5Y8L HUI 3.27869
11 5Y8L NAD 3.27869
12 5YB7 FAD 3.82514
13 5YB7 ORN 3.82514
14 5G3U ITW 3.82514
15 4U63 FAD 3.82514
16 3PC3 P1T 3.82514
17 4IEE AGS 3.82514
18 4AT0 FAD 4.37158
19 5BRT CH9 4.37158
20 5BRT FAD 4.37158
21 2DKH 3HB 4.37158
22 2DKH FAD 4.37158
23 1YC5 NCA 4.37158
24 4A22 TD4 4.91803
25 1TLL FMN 4.91803
26 4HKP TKW 4.91803
27 2DPM SAM 4.91803
28 3ATY FMN 5.46448
29 5OYH T99 5.46448
30 3A5Z KAA 5.46448
31 1T9M FMN 5.46448
32 5U8U FAD 6.01093
33 2GOU FMN 6.01093
34 1PN0 IPH 6.01093
35 1PN0 FAD 6.01093
36 5VN0 FAD 6.01093
37 3CIF G3H 6.01093
38 2JJK R15 6.01093
39 3TLJ SAH 6.01093
40 1V7C HEY 6.01093
41 2WQ4 SFU 6.41026
42 4M52 FAD 6.55738
43 1RRC ADP 6.55738
44 2R14 FMN 6.55738
45 2R14 TXD 6.55738
46 3GAY P6T 6.55738
47 2CVZ NDP 6.55738
48 1V8B NAD 7.10383
49 3G6K FAD 7.10383
50 3G6K POP 7.10383
51 4NAE 1GP 7.10383
52 3WDM ADN 7.65027
53 3ICR FAD 7.65027
54 3ICS FAD 7.65027
55 3ICT FAD 7.65027
56 3RGQ 5P5 7.69231
57 2NPX FAD 8.19672
58 2NPX NAD 8.19672
59 5K0A FAD 8.19672
60 5NI5 8YB 8.19672
61 1IT7 GUN 8.19672
62 5APK 76E 8.74317
63 2RAB FAD 9.28962
64 2WSI FAD 9.28962
65 1RC0 KT5 9.83607
66 2E1T MLC 9.83607
67 3HDY FAD 10.3825
68 3HDY FDA 10.3825
69 5JCA NDP 10.3825
70 3HDY GDU 10.3825
71 2YG3 FAD 10.3825
72 6FHO FAD 10.929
73 1WZ1 DNS 11.3821
74 4HSU FAD 11.4754
75 4FWE FAD 11.4754
76 2OBF F83 11.4754
77 4GUS FAD 11.4754
78 1W0J ADP BEF 12.0219
79 2CK3 ANP 12.0219
80 5K9B FMN 12.2222
81 4A3U FMN 12.5683
82 3C56 PH4 13.1148
83 3UMV FAD 13.6612
84 5O98 NAP 13.6612
85 3E3U NVC 14.7541
86 2C9O ADP 16.9399
87 4YRY NAD 19.1257
88 3QF7 ANP 19.6721
Pocket No.: 5; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 42
This union binding pocket(no: 5) in the query (biounit: 4p86.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1FWV SGA MAG FUC None
2 5DH3 5BS 1.63934
3 4MIX UD1 1.63934
4 2JAH NDP 1.63934
5 4M8E 29V 1.63934
6 4POJ 2VP 1.63934
7 1AOE NDP 2.18579
8 1AOE GW3 2.18579
9 3QWI CUE 2.73224
10 6F5W KG1 3.27869
11 4K26 SFF 3.27869
12 6CI9 NAP 3.27869
13 4K26 NDP 3.27869
14 1JA9 NDP 3.27869
15 2VVL FAD 3.82514
16 4EDF UPG 4.37158
17 5FFF NAP 4.37158
18 5FEU NAP 4.37158
19 5FFF 5XC 4.37158
20 5NA1 FAD 4.37158
21 1GET FAD 4.91803
22 2JAP NDP 4.91803
23 4O1M NAD 4.91803
24 2IO8 ADP 5.46448
25 5BVA FAD 6.01093
26 5H62 UDP 6.01093
27 3DLG GWE 6.55738
28 4ZA2 NAD 7.10383
29 3OID NDP 7.10383
30 3I3X U22 7.10383
31 3CH6 NAP 7.65027
32 3CH6 311 7.65027
33 5OVL NAP 7.65027
34 1SNY NAP 11.4754
35 5T2U NAP 11.4754
36 1CS4 GSP 12.5683
37 4NTD FAD 13.1148
38 1EDO NAP 13.1148
39 2X3F APC 13.1148
40 2ODE ALF GDP 14.7541
41 5WRJ A3P 15.847
42 5V22 SAH 40
Pocket No.: 6; Query (leader) PDB : 4P86; Ligand: 5GP; Similar sites found with APoc: 30
This union binding pocket(no: 6) in the query (biounit: 4p86.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 2VBU CDP None
2 4HJY NAG NAG NAG 1.63934
3 4OYA 1VE 2.18579
4 2G86 UMP 2.73224
5 2V9M CIT 3.27869
6 1WG8 SAM 3.27869
7 3NW7 LGV 3.82514
8 4KCF FMN 3.82514
9 4RPL FAD 4.37158
10 2VG1 FPP 4.37158
11 2QA1 FAD 4.91803
12 3EKK GS2 4.91803
13 4HMT NNV 4.91803
14 4HMT FMN 4.91803
15 1ZXM ANP 4.91803
16 5CEO 50D 5.46448
17 4F07 FAD 5.46448
18 3GDH SAH 5.46448
19 3A5Y KAA 5.46448
20 2PQ9 GG9 6.55738
21 4ZCC FAD 6.55738
22 4ITR GDP 7.10383
23 2QQ0 THM 8.19672
24 5XDT MB3 10.929
25 4D9C PMP 10.929
26 5H2U 1N1 13.1148
27 5AK0 8V1 14.7541
28 5TUF TDC 15.3005
29 5WRI A3P 15.847
30 1QHH ATP 16.3934
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