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Receptor
PDB id Resolution Class Description Source Keywords
4PNE 1.5 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF THE [4+2]-CYCLASE SPNF SACCHAROPOLYSPORA SPINOSA CYCLASE SAM-DEPENDENT METHYLTRANSFERASE-LIKE SPINOSYN SYNTTRANSFERASE BIOSYNTHETIC PROTEIN
Ref.: THE STRUCTURE OF SPNF, A STANDALONE ENZYME THAT CAT + 2] CYCLOADDITION. NAT.CHEM.BIOL. V. 11 256 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MLI A:302;
B:302;
Invalid;
Invalid;
none;
none;
submit data
102.046 C3 H2 O4 C(C(=...
SAH A:301;
B:301;
Valid;
Valid;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4PNE 1.5 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF THE [4+2]-CYCLASE SPNF SACCHAROPOLYSPORA SPINOSA CYCLASE SAM-DEPENDENT METHYLTRANSFERASE-LIKE SPINOSYN SYNTTRANSFERASE BIOSYNTHETIC PROTEIN
Ref.: THE STRUCTURE OF SPNF, A STANDALONE ENZYME THAT CAT + 2] CYCLOADDITION. NAT.CHEM.BIOL. V. 11 256 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 4PNE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 4PNE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 4PNE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAH; Similar ligands found: 211
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 DSH 0.692308 0.914286
6 SXZ 0.692308 0.916667
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 ADN 0.573333 0.84058
19 RAB 0.573333 0.84058
20 XYA 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SMM 0.536842 0.88
28 SSA 0.536842 0.712644
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 A 0.529412 0.763158
36 LMS 0.529412 0.694118
37 AMP 0.529412 0.763158
38 5CA 0.525773 0.712644
39 ME8 0.524752 0.8125
40 M2T 0.52439 0.821918
41 6RE 0.523256 0.824324
42 GJV 0.522727 0.813333
43 AAT 0.515789 0.863014
44 LSS 0.515152 0.696629
45 KAA 0.514852 0.727273
46 J7C 0.511364 0.835616
47 A5A 0.510417 0.697674
48 SON 0.505495 0.805195
49 SRP 0.505155 0.805195
50 F0P 0.504505 0.915493
51 54H 0.5 0.681818
52 VMS 0.5 0.681818
53 ADX 0.5 0.694118
54 CA0 0.5 0.769231
55 AMO 0.5 0.805195
56 5AL 0.5 0.779221
57 KH3 0.5 0.866667
58 NVA LMS 0.49505 0.707865
59 AHX 0.49505 0.753086
60 TSB 0.494949 0.689655
61 53H 0.494949 0.674157
62 G5A 0.494737 0.712644
63 ABM 0.494382 0.74359
64 A2D 0.494382 0.74359
65 ZAS 0.494253 0.808219
66 A6D 0.490196 0.759494
67 8QN 0.49 0.779221
68 GEK 0.49 0.956522
69 GAP 0.489583 0.769231
70 AN2 0.48913 0.734177
71 A3S 0.48913 0.884058
72 S4M 0.488889 0.831169
73 SRA 0.488636 0.746835
74 LAD 0.485437 0.810127
75 52H 0.484848 0.674157
76 A12 0.483516 0.759494
77 BA3 0.483516 0.74359
78 AP2 0.483516 0.759494
79 NEC 0.483146 0.788732
80 AOC 0.483146 0.842857
81 Y3J 0.481481 0.768116
82 VRT 0.479167 0.861111
83 50T 0.478723 0.734177
84 B4P 0.478261 0.74359
85 ADP 0.478261 0.74359
86 5AS 0.478261 0.655556
87 AP5 0.478261 0.74359
88 A3N 0.477778 0.830986
89 YSA 0.476636 0.712644
90 XAH 0.476636 0.768293
91 0XU 0.473684 0.897059
92 AT4 0.473118 0.7375
93 WAQ 0.471154 0.807692
94 NSS 0.470588 0.712644
95 5AD 0.468354 0.791045
96 AU1 0.468085 0.725
97 M33 0.468085 0.734177
98 MAO 0.467391 0.797468
99 TXA 0.466667 0.759494
100 NB8 0.466667 0.775
101 A3G 0.466667 0.871429
102 3AM 0.465909 0.727273
103 DAL AMP 0.465347 0.779221
104 8X1 0.465347 0.707865
105 A3T 0.463158 0.842857
106 ATP 0.463158 0.74359
107 HEJ 0.463158 0.74359
108 ACP 0.463158 0.746835
109 7D7 0.4625 0.785714
110 LEU LMS 0.461538 0.688889
111 9ZA 0.460784 0.740741
112 9ZD 0.460784 0.740741
113 5FA 0.458333 0.74359
114 AQP 0.458333 0.74359
115 AR6 0.458333 0.766234
116 APC 0.458333 0.759494
117 APR 0.458333 0.766234
118 PRX 0.458333 0.746835
119 F2R 0.457627 0.75
120 IOT 0.456897 0.761905
121 4AD 0.456311 0.794872
122 PAJ 0.456311 0.722892
123 WSA 0.45614 0.72093
124 YAP 0.453704 0.794872
125 8PZ 0.453704 0.712644
126 FA5 0.453704 0.805195
127 ADP PO3 0.453608 0.763158
128 ADV 0.453608 0.782051
129 NVA 2AD 0.453608 0.849315
130 SAP 0.453608 0.728395
131 AGS 0.453608 0.728395
132 RBY 0.453608 0.782051
133 AD9 0.453608 0.725
134 PTJ 0.45283 0.731707
135 MHZ 0.452632 0.797468
136 00A 0.451923 0.740741
137 A3P 0.451613 0.74026
138 YLP 0.451327 0.771084
139 7MD 0.45045 0.768293
140 ALF ADP 0.45 0.707317
141 ADP ALF 0.45 0.707317
142 2VA 0.447917 0.819444
143 OOB 0.446602 0.779221
144 ANP 0.444444 0.725
145 T99 0.444444 0.7375
146 ACQ 0.444444 0.746835
147 TAT 0.444444 0.7375
148 P5A 0.443396 0.719101
149 7D5 0.443182 0.708861
150 A1R 0.442308 0.7625
151 YLC 0.439655 0.790123
152 2AM 0.438202 0.717949
153 DLL 0.438095 0.779221
154 ARG AMP 0.4375 0.759036
155 A22 0.436893 0.734177
156 D3Y 0.436893 0.859155
157 ATF 0.435644 0.716049
158 MYR AMP 0.435185 0.746988
159 80F 0.434426 0.75
160 SO8 0.434343 0.808219
161 OAD 0.433962 0.769231
162 3UK 0.433962 0.769231
163 TAD 0.433628 0.765432
164 25A 0.432692 0.74359
165 6YZ 0.431373 0.746835
166 VO4 ADP 0.431373 0.734177
167 ADP VO4 0.431373 0.734177
168 9SN 0.431193 0.731707
169 TYM 0.431034 0.805195
170 B5V 0.429907 0.759494
171 PR8 0.429907 0.8
172 ADQ 0.428571 0.746835
173 YLB 0.42735 0.771084
174 9K8 0.425926 0.67033
175 1ZZ 0.425926 0.746988
176 FYA 0.425926 0.779221
177 3OD 0.425926 0.769231
178 PPS 0.425743 0.674419
179 MAP 0.423077 0.707317
180 A2P 0.421053 0.727273
181 4YB 0.421053 0.735632
182 9X8 0.420561 0.75
183 ADP BMA 0.420561 0.746835
184 TYR AMP 0.419643 0.794872
185 5SV 0.419048 0.731707
186 3NZ 0.416667 0.824324
187 YLA 0.416667 0.771084
188 8Q2 0.415254 0.688889
189 A3R 0.415094 0.7625
190 B5Y 0.414414 0.75
191 B5M 0.414414 0.75
192 48N 0.413793 0.753086
193 LPA AMP 0.413793 0.768293
194 AYB 0.413223 0.761905
195 ACK 0.413043 0.710526
196 QQY 0.413043 0.696203
197 BIS 0.412844 0.719512
198 JB6 0.412844 0.7625
199 PAP 0.41 0.730769
200 DQV 0.408696 0.75641
201 OVE 0.408602 0.7125
202 AMP DBH 0.40708 0.746835
203 4UV 0.40708 0.75
204 3AD 0.406977 0.852941
205 AF3 ADP 3PG 0.40678 0.743902
206 OMR 0.40678 0.738095
207 LAQ 0.405172 0.768293
208 A A 0.40367 0.74359
209 7C5 0.403509 0.789474
210 7MC 0.403361 0.75
211 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4PNE; Ligand: SAH; Similar sites found with APoc: 566
This union binding pocket(no: 1) in the query (biounit: 4pne.bio3) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 2FKA BEF None
2 4QAR ADE None
3 5FH7 5XL None
4 3A4V NAD 0.993378
5 3A4V PYR 0.993378
6 1JQ3 AAT 1.01351
7 4D79 ATP 1.08696
8 3U31 NAD 1.37931
9 5WBF LAC 1.48148
10 2AE2 PTO 1.53846
11 2AE2 NAP 1.53846
12 1Q0S SAH 1.5444
13 1EDO NAP 1.63934
14 5JAQ NAI 1.65563
15 4Y9D NAI 1.65563
16 2DPM SAM 1.76056
17 4JCA CIT 1.79641
18 3A4M ADP 1.92308
19 1G55 SAH 1.98676
20 4UCI SAM 1.98676
21 3FXU TSU 1.98676
22 2FR1 NDP 1.98676
23 2YX1 SFG 1.98676
24 6BWL NAD 1.98676
25 1ONX ASP 1.98676
26 5JWC FAD 1.98676
27 2F2U M77 1.98676
28 5BUK FAD 1.98676
29 5A3B APR 1.98676
30 3GEG NAD 2.02429
31 2YLN CYS 2.12014
32 1XG5 NAP 2.15054
33 1JA9 NDP 2.18978
34 3A27 SAM 2.20588
35 1RJD SAM 2.31788
36 5X62 SAH 2.31788
37 6B92 SAH 2.31788
38 3PT9 SAH 2.31788
39 5DF1 NAP 2.31788
40 5DF1 58X 2.31788
41 4N49 SAM 2.31788
42 2YY7 NAD 2.31788
43 1YBH FAD 2.31788
44 3VSE SAH 2.31788
45 1ZBQ NAD 2.31788
46 5ZYN FAD 2.31788
47 1P31 EPU 2.31788
48 4ZRN NAD 2.31788
49 4ZRN UPG 2.31788
50 4RL4 PPV 2.35849
51 6GFK SAH 2.39044
52 1UZN NAP 2.42915
53 5Z2L NDP 2.44898
54 3R51 MMA 2.5
55 2AJH MET 2.55102
56 3QWI CUE 2.59259
57 3QWI NAP 2.59259
58 2EFJ SAH 2.64901
59 4PIO SAH 2.64901
60 4PIO AVI 2.64901
61 3L9W AMP 2.64901
62 3L9W GSH 2.64901
63 5FJN FAD 2.64901
64 5FJN BE2 2.64901
65 2JK0 ASP 2.64901
66 4RPL 3UC 2.64901
67 4RPL FAD 2.64901
68 5K4W THR 2.64901
69 5K4W NAI 2.64901
70 1PL6 NAD 2.64901
71 2V3V MGD 2.64901
72 3PPQ CHT 2.64901
73 4W6Z 8ID 2.64901
74 2JB2 PHE 2.64901
75 2JB2 FAD 2.64901
76 1N2X SAM 2.65781
77 1JT1 MCO 2.6616
78 3RKR NAP 2.67176
79 3O7W SAM 2.72109
80 1GEG NAD 2.73438
81 2YJP CYS 2.74914
82 4YAG NAI 2.76817
83 3BY8 MLT 2.8169
84 2BD0 NAP 2.86885
85 5A9A UTP 2.88066
86 1WY7 SAH 2.89855
87 1ONI BEZ 2.89855
88 4E03 ADP 2.91262
89 4RF2 NAP 2.94118
90 4XCP PLM 2.94118
91 4RSL FAD 2.98013
92 4HXY NDP 2.98013
93 1X87 NAD 2.98013
94 1ELI PYC 2.98013
95 1YQZ FAD 2.98013
96 4GKV NAD 2.98013
97 2O07 MTA 2.98013
98 2O07 SPD 2.98013
99 1I8T FAD 2.98013
100 1G60 SAM 3.07692
101 3HVJ 705 3.16742
102 4CS9 AMP 3.1746
103 1VKF CIT 3.19149
104 4COQ SAN 3.23887
105 3EVF SAH 3.2491
106 3EVF GTA 3.2491
107 4FC7 COA 3.2491
108 4FC7 NAP 3.2491
109 1KYQ NAD 3.28467
110 5KXE 6Y2 3.29218
111 6F9Q NAD 3.30882
112 6D6Y SAH 3.31126
113 5YF1 SFG 3.31126
114 5YF1 8V0 3.31126
115 1UWK NAD 3.31126
116 1UWK URO 3.31126
117 4G5H UD7 3.31126
118 4G5H NAP 3.31126
119 2E5V FAD 3.31126
120 3MAG SAH 3.31126
121 4YDD MGD 3.31126
122 4YDD MD1 3.31126
123 4D5G FAD 3.31126
124 4D5G TPP 3.31126
125 5WGR FAD 3.31126
126 1RM0 D6P 3.31126
127 1RM0 NAI 3.31126
128 4WES HCA 3.31126
129 4XQC NAD 3.31126
130 4XQC 13D 3.31126
131 3MCT SAH 3.367
132 3FRH SAH 3.55731
133 2BGM NAJ 3.59712
134 2XHK AKG 3.6036
135 2HK9 ATR 3.63636
136 6EL3 NAP 3.64238
137 5J47 6JJ 3.64238
138 3WGT QSC 3.64238
139 3WGT FAD 3.64238
140 1RJW ETF 3.64238
141 2E7Z MGD 3.64238
142 2PT9 2MH 3.64238
143 1ORR NAD 3.64238
144 3WCZ CIT 3.64238
145 2PT9 S4M 3.64238
146 2JAH NDP 3.64372
147 2JAP NDP 3.64372
148 4J6W C 3.65854
149 4J6W CDP 3.65854
150 4XUC 43G 3.66972
151 4XUC SAM 3.66972
152 1P77 ATR 3.67647
153 4YAC NAI 3.7037
154 1UAY ADN 3.71901
155 2VT3 ATP 3.72093
156 1R6N 434 3.79147
157 1ZEM NAD 3.81679
158 1XCL SAH 3.82979
159 4CQM NAP 3.83142
160 2OFW ADX 3.84615
161 4OB1 BUB 3.86266
162 3OID NDP 3.87597
163 2CUL FAD 3.87931
164 1G0N NDP 3.88693
165 1G0N PHH 3.88693
166 1EJ0 SAM 3.88889
167 3FGZ BEF 3.90625
168 2WSB NAD 3.93701
169 2PYY GLU 3.94737
170 5FUB SAH 3.97351
171 1YXM ADE 3.97351
172 5FWA J7C 3.97351
173 6FDF SAH 3.97351
174 3EF0 ALF 3.97351
175 2V6G NAP 3.97351
176 6BQ6 TER 3.97351
177 5VN0 FAD 3.97351
178 5WKC FAD 3.97351
179 1U6R IOM 3.97351
180 5VN0 NAI 3.97351
181 6DEN G8A 3.97351
182 6DEN TP9 3.97351
183 6DEN FAD 3.97351
184 2AWN ADP 3.97351
185 1T9D 1MM 3.97351
186 1T9D PYD 3.97351
187 3W68 PBU 3.97351
188 5K7U SAM 3.97351
189 1T9D P25 3.97351
190 1T9D FAD 3.97351
191 1H2B NAJ 3.97351
192 5IL1 SAM 4
193 4O0L NDP 4
194 3FPF TNA 4.02685
195 3FPF MTA 4.02685
196 3NUG NAD 4.04858
197 3CH6 NAP 4.1958
198 3CH6 311 4.1958
199 5JJR SAH 4.30464
200 6HKE MLT 4.30464
201 3G5S FAD 4.30464
202 6HKE LMR 4.30464
203 2GCG DGY 4.30464
204 2YVF NAD 4.30464
205 2YVF FAD 4.30464
206 4L2I FAD 4.30464
207 1MUU NAD 4.30464
208 3ELW SAM 4.33333
209 3ELW GP3 4.33333
210 1AE1 NAP 4.3956
211 1I1N SAH 4.42478
212 5D4V SAH 4.47761
213 5ZZO FLC 4.47761
214 1P1C SAH 4.52261
215 1O5O U5P 4.52489
216 2EG5 SAH 4.63576
217 1U2Z SAH 4.63576
218 3ABI NAD 4.63576
219 1ZK4 NAP 4.63576
220 1W6U NAP 4.63576
221 1W8D NAP 4.63576
222 1W73 NAP 4.63576
223 6ER9 FAD 4.63576
224 1MO9 KPC 4.63576
225 1MO9 FAD 4.63576
226 4NBW NAD 4.66926
227 2IVF MGD 4.6729
228 1JAY F42 4.71698
229 6F4W FMC 4.72103
230 3EVG SAH 4.72727
231 5O4J 9KH 4.74453
232 5O4J PJL 4.74453
233 5O4J SAH 4.74453
234 4WOH 4NP 4.81928
235 4ITU 1HS 4.83271
236 4ITU NAI 4.83271
237 5CUQ NSC 4.86891
238 2XYQ SAH 4.91803
239 1KZI THG 4.92424
240 2UYQ SAM 4.96689
241 3S1S SAH 4.96689
242 1V59 NAD 4.96689
243 2F5X ASP 4.96689
244 1GZ6 NAI 4.96689
245 2PK3 A2R 4.96689
246 3A25 SAM 4.98339
247 1LVG ADP 5.05051
248 5FTW SAH 5.07812
249 2BZ1 TAU 5.10204
250 1VL8 NAP 5.24345
251 1R18 SAH 5.28634
252 2P41 SAH 5.29801
253 5BJX NAD 5.29801
254 5BJX UDP 5.29801
255 3FSY SCA 5.29801
256 5MLR NAP 5.29801
257 5MLR GRQ 5.29801
258 1BXK NAD 5.29801
259 1EFV FAD 5.29801
260 1V6A TRE 5.29801
261 1VRP IOM 5.29801
262 1EFV AMP 5.29801
263 6GAR FAD 5.29801
264 1QAN SAH 5.32787
265 4FN4 NAD 5.51181
266 2PX8 SAH 5.57621
267 1IY8 NAD 5.61798
268 1E5Q NDP 5.62914
269 3ML1 MGD 5.62914
270 1H5Q NAP 5.62914
271 3M6W SAM 5.62914
272 1TZD ADP 5.62914
273 4MCC 21X 5.62914
274 1SB8 UD2 5.68182
275 1SB8 NAD 5.68182
276 1XKQ NDP 5.71429
277 5O42 BGC 5.83942
278 5O42 NAD 5.83942
279 5O42 9JW 5.83942
280 3MB5 SAM 5.88235
281 5YEC ATP 5.88235
282 2GN4 NDP 5.96026
283 1Y8Q ATP 5.96026
284 2GN4 UD1 5.96026
285 2CDU ADP 5.96026
286 1NW5 SAM 5.96026
287 1FEC FAD 5.96026
288 2AAZ CB3 5.96026
289 1GPJ CIT 5.96026
290 4AQ4 G3P 5.96026
291 2CDU FAD 5.96026
292 4POO SAM 6
293 1G8K MGD 6.01504
294 3G2O SAM 6.02007
295 1O5I NAD 6.0241
296 2RH4 EMO 6.13718
297 4BLW AMP 6.22837
298 4BLW SAH 6.22837
299 1RGE 2GP 6.25
300 3ZVS MLI 6.25
301 3SLS 77D 6.25
302 4LHD GLY 6.29139
303 3TKY SAH 6.29139
304 5E8J SAH 6.29139
305 5E9W SAH 6.29139
306 4C4A SAH 6.29139
307 4EUE NAI 6.29139
308 4UZI IMD 6.29139
309 5ERM 210 6.29139
310 4NZF ARB 6.29139
311 3P9C SAH 6.29139
312 3C6K SPD 6.29139
313 3C6K MTA 6.29139
314 5N0J FAD 6.29139
315 6DUB SAH 6.30631
316 1ZQ9 SAM 6.31579
317 2I7C AAT 6.36042
318 3GCZ SAM 6.38298
319 3WV8 ATP 6.42202
320 1U7T TDT 6.51341
321 1E3W NAD 6.51341
322 2XVM SAH 6.53266
323 1E6W NAD 6.53846
324 4RDH AMP 6.59722
325 4RDI ATP 6.59722
326 5ICE SAH 6.62252
327 5ICE 2H4 6.62252
328 4ONQ SFG 6.62252
329 2IZ1 ATR 6.62252
330 5GT9 NAP 6.62252
331 6DXS HJ7 6.62252
332 3BJE URA 6.62252
333 2ZXI FAD 6.62252
334 1WVG APR 6.62252
335 3FPZ AHZ 6.62252
336 3AXB FAD 6.62252
337 1TE2 PGA 6.63717
338 2ZIF SAM 6.73401
339 2WA2 SAM 6.88406
340 2HMT NAI 6.94444
341 2EJU SAH 6.95364
342 5W7R SAH 6.95364
343 3SSO SAH 6.95364
344 5W7R 9Z7 6.95364
345 1EK6 NAI 6.95364
346 1EK6 UPG 6.95364
347 4BV6 FAD 6.95364
348 3A28 NAD 6.97674
349 1WG8 SAM 7.01754
350 1SQS TLA 7.02479
351 3U40 ADN 7.02479
352 1NJR XYL 7.04225
353 4A6D SAM 7.08215
354 2GDZ NAD 7.11611
355 3GRU AMP 7.11864
356 2AOT SAH 7.19178
357 1JQD SAH 7.19178
358 1JQD HSM 7.19178
359 4IF4 BEF 7.21154
360 5FEU NAP 7.2165
361 1BDB NAD 7.22022
362 1JG3 ADN 7.23404
363 5Z75 NAD 7.28477
364 5EJ2 NAD 7.28477
365 5XL4 SIA 7.28477
366 2VZ6 FEF 7.28477
367 2JJQ SAH 7.28477
368 4K26 SFF 7.28477
369 4K26 NDP 7.28477
370 2AG5 NAD 7.31707
371 3VYW SAM 7.46753
372 3ZV6 NAD 7.47331
373 3ZV6 4HB 7.47331
374 3KLJ FAD 7.53247
375 3KIF GDL 7.54717
376 3O03 NAP 7.56014
377 3GWZ SAH 7.58808
378 3GXO SAH 7.58808
379 5ERG SAM 7.61589
380 5HJM MTA 7.61589
381 4YUW 4JU 7.61589
382 6F97 FAD 7.61589
383 4YUW S4M 7.61589
384 1PN0 IPH 7.61589
385 4J1Q NDP 7.61589
386 1PN0 FAD 7.61589
387 3A4T SFG 7.66423
388 5YJI 8WO 7.74648
389 5YJI SAH 7.74648
390 1NV8 SAM 7.74648
391 1NV8 MEQ 7.74648
392 2PWY SAH 7.75194
393 3U4C NDP 7.82918
394 2NV2 GLN 7.84314
395 2CHT TSA 7.87402
396 3SJU NDP 7.8853
397 1DL5 SAH 7.94702
398 2Q1W NAD 7.94702
399 4II2 ATP 7.97546
400 4X7Y SAH 8.0292
401 2DT5 NAD 8.05687
402 3DUW SAH 8.07175
403 3BGD SAH 8.07692
404 3BGD PM6 8.07692
405 1NFQ NAI 8.07692
406 4FZV SAM 8.07799
407 3QVL 5HY 8.16327
408 3H8V ATP 8.21918
409 3LU1 NAD 8.24176
410 5L95 AMP 8.24373
411 3GD4 NAD 8.27815
412 3GD4 FAD 8.27815
413 1GY8 NAD 8.27815
414 2HIM ASN 8.27815
415 3RMK BML 8.43373
416 4G7A AZM 8.46774
417 1PJS NAD 8.60927
418 4DCM SAM 8.60927
419 3WMX NAD 8.60927
420 5ZZ6 ADP 8.65385
421 3KO0 TFP 8.91089
422 3NDJ JHZ 8.9404
423 3NDJ SAH 8.9404
424 5XNC MTA 8.9404
425 3X0D SAH 8.9404
426 1NW4 IMH 8.9404
427 2PZM UDP 8.9404
428 2PZM NAD 8.9404
429 2C31 ADP 8.9404
430 2C31 TZD 8.9404
431 1L0I PSR 8.97436
432 6CZ7 MGD 8.97436
433 1L7N ALF 9.00474
434 1KQF MGD 9.18367
435 2ZL4 ALA ALA ALA ALA 9.18367
436 3FUU ADN 9.22509
437 1BW9 NAD 9.27152
438 1UDB UFG 9.27152
439 1UDB NAD 9.27152
440 1XHL NDP 9.42761
441 1XHL TNE 9.42761
442 2A14 SAH 9.5057
443 3SJ7 NDP 9.52381
444 3QOX SAH 9.60265
445 5MW4 5JU 9.60265
446 6ARJ SAH 9.60265
447 6ARJ BW4 9.60265
448 5DX8 SFG 9.60265
449 5DXA SFG 9.60265
450 5DX1 SFG 9.60265
451 5DWQ SFG 9.60265
452 5DX0 SFG 9.60265
453 2DTX BMA 9.84848
454 1KYZ SAH 9.93377
455 1KYZ FER 9.93377
456 4WA2 SIA GAL NAG 9.93377
457 5WJ6 B4A 9.93377
458 2UYN 2KT 10.0775
459 4M73 SAH 10.2649
460 4M73 M72 10.2649
461 3G89 SAM 10.4418
462 2EWM NAD 10.4418
463 2Q28 ADP 10.596
464 5XLX SAH 10.6383
465 1BC5 SAH 10.7807
466 6CI9 NAP 10.8108
467 4DMG SAM 10.9415
468 2WK1 SAH 10.9929
469 3JWH SAH 11.0599
470 3Q87 SAM 11.1765
471 3CBG SAH 11.2069
472 4URF NAD 11.2903
473 1LSS NAD 11.4286
474 2ZWA SAH 11.5894
475 3C3Y SAH 11.8143
476 1R27 MGD 11.9205
477 2YLD CMO 12.2517
478 5OVK NDP 12.5
479 1KPG SAH 12.5436
480 2GAG FOA 12.8571
481 2GAG FAD 12.8571
482 3DMH GMP 12.9139
483 3DMH SAM 12.9139
484 2NXE SAM 12.9921
485 1SQL GUN 13.0137
486 1KPH SAH 13.2404
487 1L1E SAH 13.2404
488 2IV2 MGD 13.245
489 4X5S AZM 13.3621
490 1TPY SAH 13.5889
491 3GDH SAH 13.6929
492 4DA6 GA2 13.834
493 4M37 SAH 14.2384
494 4M38 SAH 14.2384
495 4AZW SAM 14.5695
496 5EEH SAH 14.6277
497 5EEH P9P 14.6277
498 3DXY SAM 14.6789
499 3IWD M2T 14.7059
500 4NBU NAI 15.2
501 5TVI O8N 15.2174
502 4Y30 SAH 15.2318
503 4Y30 49L 15.2318
504 3EGI ADP 15.534
505 5W7M SAH 15.5629
506 3I53 SAH 15.6627
507 5FA5 MTA 15.894
508 4X60 3XV 15.894
509 4X60 SFG 15.894
510 4GQB 0XU 15.894
511 5FFF 5XC 15.9533
512 5FFF NAP 15.9533
513 3THR C2F 16.041
514 5THY SAH 16.2252
515 1O97 FAD 16.2879
516 1O97 AMP 16.2879
517 3LCC SAH 16.8874
518 1PR9 NAP 17.2131
519 3D3W NAP 17.2131
520 1XDS SAM 17.2185
521 1QZZ SAM 17.2185
522 2JHP SAH 17.8808
523 3TKA SAM 18.543
524 4OBW SAM 18.677
525 3TLJ SAH 18.8742
526 5W7K SAH 19.2053
527 5WP5 SAH 19.2053
528 5THZ SAH 19.2053
529 2BZG SAH 20.6897
530 3GU3 SAH 20.7746
531 1IM8 SAI 21.3115
532 5DM1 SAH 21.3483
533 5DM1 5D7 21.3483
534 2FK8 SAM 21.5232
535 2VDV SAM 21.5447
536 4R6W PC 21.7054
537 4R6W SAH 21.7054
538 1VHW ADN 21.7391
539 5ZW3 SAH 21.7778
540 2OBF F83 21.7993
541 2OBF SAH 21.7993
542 5MPT SAH 21.8543
543 1VE3 SAM 22.0264
544 3FZG SAM 24
545 3OFK SAH 24.0741
546 4IWN GEK 24.4541
547 5MGZ SAH 24.5763
548 6GKV SAH 24.8344
549 5DLY SAH 25.9398
550 5DLY 5D7 25.9398
551 5KOK SAH 26.1589
552 5KOK S9T 26.1589
553 5KOK R9T 26.1589
554 5M58 SAH 26.5217
555 2PXX SAH 27.907
556 2V7Q ADP 28.0822
557 1Z3C SA8 28.8591
558 3VC1 GST 29.1667
559 3VC1 SAH 29.1667
560 5WP4 SAH 29.8013
561 5GWX SAM 30.9859
562 5GWX SAR 30.9859
563 3TN7 NJP 34.2412
564 5E1M SAH 37.3444
565 5E1M PRO PRO LYS ARG ILE ALA 37.3444
566 4QTU SAM 37.9808
Pocket No.: 2; Query (leader) PDB : 4PNE; Ligand: SAH; Similar sites found with APoc: 40
This union binding pocket(no: 2) in the query (biounit: 4pne.bio3) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 5JCM ISD 1.65563
2 5JCM FAD 1.65563
3 5JCM NAD 1.65563
4 3X01 AMP 1.98676
5 1QO8 FAD 2.31788
6 5K8P 6R8 2.31788
7 3CEV ARG 2.34114
8 4U36 TNR 2.5
9 2HYV UAP SGN IDS SGN IDS 2.5974
10 4EIL CB3 2.64901
11 5ZXD ATP 2.64901
12 4XFR CIT 2.64901
13 1Q8A HCS 2.98013
14 5BVA FAD 2.98013
15 3UWB BB2 3.24675
16 4NTC FAD 3.31126
17 1KZL CRM 3.36538
18 1D4D FAD 3.64238
19 4OB0 PBC 3.86266
20 3CTY FAD 3.97351
21 5OJI NAP 4.61538
22 5OJI ISN 4.61538
23 6ER9 NAP 4.63576
24 2BQP GLC 5.12821
25 5I39 FAD 5.96026
26 5XWV NDP 6.95364
27 5XWV 8H6 6.95364
28 3S5W FAD 7.61589
29 5NM7 GLY 8.27068
30 4USI AKG 8.44156
31 5URY PAM 8.90411
32 5J7W MTX 8.9404
33 1TUK PGM 10.4478
34 3JUC PCA 10.4575
35 3WRB GDE 11.9205
36 3N8K D1X 12.7907
37 3KIH GDL 13.4021
38 2BWN SIN 14.9007
39 4YSX FAD 19.6809
40 2OOR NAD 24.7126
Pocket No.: 3; Query (leader) PDB : 4PNE; Ligand: SAH; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 4pne.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 4PNE; Ligand: SAH; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4pne.bio2) has 25 residues
No: Leader PDB Ligand Sequence Similarity
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