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Receptor
PDB id Resolution Class Description Source Keywords
4PVD 2.4 Å EC: 1.1.1.283 CRYSTAL STRUCTURE OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE RE GRE2 COMPLEXED WITH NADPH SACCHAROMYCES CEREVISIAE ROSSMANN FOLD REDUCTASE NADPH BINDING OXIDOREDUCTASE
Ref.: STRUCTURAL INSIGHTS INTO THE COFACTOR-ASSISTED SUBS RECOGNITION OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE REDUCTASE GRE2 BIOCHIM.BIOPHYS.ACTA V.1844 1486 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NDP A:401;
B:401;
Valid;
Valid;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4PVD 2.4 Å EC: 1.1.1.283 CRYSTAL STRUCTURE OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE RE GRE2 COMPLEXED WITH NADPH SACCHAROMYCES CEREVISIAE ROSSMANN FOLD REDUCTASE NADPH BINDING OXIDOREDUCTASE
Ref.: STRUCTURAL INSIGHTS INTO THE COFACTOR-ASSISTED SUBS RECOGNITION OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE REDUCTASE GRE2 BIOCHIM.BIOPHYS.ACTA V.1844 1486 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 5ZEC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5ZED - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 5Z2X - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 5ZEC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5ZED - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 5Z2X - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NDP; Similar ligands found: 172
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 1DG 0.68 1
8 DG1 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 80F 0.537879 0.914634
23 2AM 0.529412 0.87013
24 6V0 0.519685 0.974026
25 NAP 0.514493 0.922078
26 7L1 0.507143 0.763441
27 EAD 0.507143 0.949367
28 A2D 0.504673 0.921053
29 TXE 0.503876 0.935897
30 NA0 0.496454 0.910256
31 TXD 0.496124 0.911392
32 SAP 0.495575 0.875
33 AGS 0.495575 0.875
34 P1H 0.493056 0.925926
35 CO7 0.489796 0.791209
36 TAP 0.489362 0.864198
37 PAP 0.482456 0.907895
38 BA3 0.481818 0.921053
39 NAJ PZO 0.478261 0.924051
40 ATP 0.477876 0.921053
41 HEJ 0.477876 0.921053
42 B4P 0.477477 0.921053
43 AP5 0.477477 0.921053
44 ADP 0.477477 0.921053
45 OAD 0.47541 0.897436
46 AR6 0.473684 0.896104
47 AQP 0.473684 0.921053
48 5FA 0.473684 0.921053
49 APR 0.473684 0.896104
50 AN2 0.473214 0.909091
51 3OD 0.467742 0.897436
52 50T 0.464912 0.884615
53 NAJ PYZ 0.464789 0.879518
54 9X8 0.463415 0.851852
55 PO4 PO4 A A A A PO4 0.463415 0.857143
56 V3L 0.461538 0.896104
57 2A5 0.46087 0.85
58 AT4 0.460177 0.886076
59 A1R 0.459016 0.841463
60 4AD 0.459016 0.875
61 ADQ 0.459016 0.897436
62 OVE 0.458716 0.8375
63 OMR 0.458647 0.813953
64 PPS 0.457627 0.811765
65 AD9 0.456897 0.897436
66 CA0 0.45614 0.897436
67 M33 0.45614 0.884615
68 ADJ 0.455882 0.879518
69 A3P 0.455357 0.894737
70 ACP 0.452174 0.897436
71 ENP 0.451613 0.85
72 UP5 0.451128 0.948052
73 SRP 0.45 0.8625
74 ANP 0.449153 0.897436
75 ACQ 0.449153 0.897436
76 PRX 0.448276 0.82716
77 A3R 0.447154 0.841463
78 5AL 0.445378 0.884615
79 7D4 0.443478 0.8375
80 ADX 0.443478 0.811765
81 6YZ 0.438017 0.897436
82 A 0.436364 0.894737
83 AMP 0.436364 0.894737
84 4TC 0.433824 0.924051
85 7D3 0.433628 0.8375
86 DCA 0.433566 0.788889
87 ETB 0.433566 0.797753
88 BIS 0.433071 0.864198
89 1ZZ 0.433071 0.802326
90 00A 0.432 0.864198
91 ATF 0.429752 0.886076
92 DQV 0.428571 0.934211
93 0T1 0.427586 0.788889
94 5SV 0.427419 0.788235
95 8QN 0.427419 0.884615
96 3AM 0.427273 0.857143
97 N01 0.426573 0.884615
98 PR8 0.425197 0.811765
99 LAD 0.425197 0.821429
100 WAQ 0.425197 0.841463
101 DTP 0.425 0.8375
102 AMO 0.424 0.886076
103 PAJ 0.424 0.843373
104 APC 0.423729 0.886076
105 UPA 0.423358 0.935897
106 48N 0.422222 0.853659
107 FYA 0.421875 0.860759
108 PTJ 0.421875 0.853659
109 CNA 0.421429 0.910256
110 PUA 0.42069 0.9125
111 DND 0.419118 0.910256
112 NXX 0.419118 0.910256
113 AV2 0.418033 0.848101
114 COA 0.417808 0.788889
115 3UK 0.417323 0.897436
116 OOB 0.416 0.909091
117 IVC 0.415584 0.78022
118 DAT 0.415254 0.8375
119 NDO 0.414966 0.897436
120 139 0.414286 0.901235
121 B5V 0.414062 0.886076
122 T99 0.413223 0.886076
123 TAT 0.413223 0.886076
124 3AT 0.413223 0.896104
125 YLB 0.413043 0.784091
126 62F 0.4125 0.823529
127 ABM 0.412281 0.848101
128 B5M 0.412214 0.875
129 YAP 0.412214 0.875
130 YLP 0.411765 0.784091
131 NB8 0.410853 0.853659
132 ME8 0.410853 0.802326
133 SON 0.410256 0.886076
134 DLL 0.409449 0.909091
135 AHX 0.409449 0.853659
136 CAO 0.409396 0.763441
137 30N 0.409396 0.72449
138 AMX 0.409396 0.797753
139 COS 0.409396 0.771739
140 7D5 0.409091 0.8125
141 4UW 0.408759 0.9125
142 F2R 0.408451 0.825581
143 APX 0.407692 0.841463
144 SRA 0.40708 0.85
145 CMX 0.406667 0.788889
146 SCO 0.406667 0.788889
147 TYM 0.405797 0.886076
148 COD 0.405594 0.777778
149 CA6 0.405229 0.70297
150 OXK 0.405229 0.771739
151 AP2 0.405172 0.886076
152 A12 0.405172 0.886076
153 9SN 0.40458 0.853659
154 LAQ 0.404412 0.802326
155 T5A 0.404255 0.914634
156 FAM 0.403974 0.771739
157 ACO 0.403974 0.763441
158 FCX 0.403974 0.763441
159 VO4 ADP 0.403226 0.860759
160 ADP VO4 0.403226 0.860759
161 YLC 0.402878 0.823529
162 1VU 0.402597 0.763441
163 B5Y 0.401515 0.875
164 FA5 0.401515 0.886076
165 HAX 0.401316 0.771739
166 AR6 AR6 0.4 0.871795
167 CAJ 0.4 0.771739
168 AFH 0.4 0.843373
169 APU 0.4 0.923077
170 A U 0.4 0.898734
171 TXA 0.4 0.886076
172 4UU 0.4 0.948052
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4PVD; Ligand: NDP; Similar sites found with APoc: 485
This union binding pocket(no: 1) in the query (biounit: 4pvd.bio2) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1PTR PRB None
2 2ZAT NAP 1.15385
3 4ZGS NAD 1.46199
4 3V1Y NAD 1.48368
5 1HDG NAD 1.50602
6 1QG6 NAD 1.53257
7 1QG6 TCL 1.53257
8 2EXX NAP 1.63399
9 1VL0 NAI 1.71233
10 4J7U NAP 1.73611
11 4J7U YTZ 1.73611
12 5GWE GWM 1.75439
13 1P31 EPU 1.75439
14 1Z6Z NAP 1.77305
15 4FC7 COA 1.80505
16 4FC7 NAP 1.80505
17 1PZG A3D 1.81269
18 6F9Q NAD 1.83824
19 5L53 NAP 1.85185
20 1W6U NAP 1.98676
21 1W8D NAP 1.98676
22 1W73 NAP 1.98676
23 2AG5 NAD 2.03252
24 6EL3 NAP 2.04678
25 3L9W AMP 2.04678
26 3CIF G3H 2.04678
27 3H5N ATP 2.04678
28 3CIF NAD 2.04678
29 5LD5 NAD 2.04678
30 1N5D NDP 2.08333
31 1LUA NAP 2.09059
32 3CMC NAD 2.09581
33 4Z0H NAD 2.09581
34 2GCG NDP 2.12121
35 2F1K NAP 2.15054
36 3C1O NAP 2.18069
37 4O0L NDP 2.18182
38 1GZ6 NAI 2.19436
39 4O1M NAD 2.22222
40 1SNY NAP 2.24719
41 1X1T NAD 2.30769
42 1YXM ADE 2.31023
43 1RYD NDP 2.32558
44 1ORR NAD 2.33918
45 1TI7 NAP 2.33918
46 1K3T BRZ 2.33918
47 4YRI 4JH 2.33918
48 1I9Z 2IP 2.33918
49 5FEU NAP 2.4055
50 3NUG NAD 2.42915
51 1B8U OAA 2.43161
52 1B8U NAD 2.43161
53 1EZ4 NAD 2.51572
54 2RH4 EMO 2.52708
55 1WMA NDP 2.53623
56 1WMA AB3 2.53623
57 2YY7 NAD 2.5641
58 5WQP NCA 2.5641
59 5WQP NAP 2.5641
60 3RF4 FUN 2.58621
61 2FR1 NDP 2.63158
62 5NCB JZ3 2.63158
63 1CT9 AMP 2.63158
64 1H6C SIN 2.63158
65 1H6C NDP 2.63158
66 4Q9N NAI 2.68456
67 5FFF NAP 2.72374
68 5FFF 5XC 2.72374
69 3OJF NDP 2.72374
70 3OJF IMJ 2.72374
71 5F5N NAD 2.76817
72 1ZK4 NAP 2.78884
73 1ZK4 AC0 2.78884
74 5UAV NDP 2.79503
75 5UAV TFB 2.79503
76 4D42 NAP 2.83688
77 4D42 W0I 2.83688
78 1XKQ NDP 2.85714
79 1LSS NAD 2.85714
80 1N7G NDP 2.92398
81 1N7G GDR 2.92398
82 1YS4 NAP 2.92398
83 4XQC 13D 2.92398
84 4XQC NAD 2.92398
85 4AP3 FAD 2.92398
86 4AP3 NAP 2.92398
87 4L8V NAP 2.96736
88 6AA8 NAD 2.98013
89 1K3A ACP 3.01003
90 1V6A TRE 3.01205
91 2GLX NDP 3.01205
92 2PV7 NAD 3.02013
93 1LDM NAD 3.03951
94 5EPO NAP 3.05344
95 1ZBQ NAD 3.0581
96 4NBW NAD 3.11284
97 5KKA 6V0 3.20513
98 2GN4 UD1 3.21637
99 2GN4 NDP 3.21637
100 2X6T NAP 3.21637
101 5JAQ NAI 3.21637
102 4EUE NAI 3.21637
103 5EIN NAP 3.21637
104 2VT3 ATP 3.25581
105 2V7O DRN 3.27381
106 3R7F CP 3.28947
107 4KOA NDP 3.3033
108 5T9F TYR 3.32103
109 5T9F NAP 3.32103
110 5T9E NAP 3.32103
111 1V35 NAI 3.34347
112 2CVQ NDP 3.36391
113 1NFQ NAI 3.46154
114 1OC2 TDX 3.50877
115 1OC2 NAD 3.50877
116 2GZ3 NAP 3.50877
117 6BXL SAM 3.50877
118 4WOE ADP 3.50877
119 3A06 NDP 3.50877
120 1ZH8 NAP 3.52941
121 1EQ2 NAP 3.54839
122 1CER NAD 3.62538
123 5JE8 NAD 3.64238
124 1JA9 NDP 3.64964
125 1ZX5 LFR 3.66667
126 3RFV NAI 3.74532
127 3RFV 15L 3.74532
128 1GR0 NAD 3.80117
129 6A3J SOE 3.80117
130 3ITJ CIT 3.80117
131 6A3J NAI 3.80117
132 3ABI NAD 3.80117
133 4CIB 7UZ 3.80117
134 4OHU 2TK 3.80623
135 4OHU NAD 3.80623
136 1U7T TDT 3.83142
137 1U7T NAD 3.83142
138 1R6D NAD 3.85757
139 1R6D DAU 3.85757
140 2P39 SCR 3.87097
141 3A28 NAD 3.87597
142 4XB2 NDP 3.8806
143 4XB2 HSE 3.8806
144 4E13 NAD 3.88693
145 2DBZ NAP 3.89222
146 5EJ2 NAD 3.8961
147 4Y9D NAI 3.93443
148 3SJU NDP 3.94265
149 5GWT SIN 3.95683
150 5GWT NAD 3.95683
151 1MXH DHF 3.98551
152 1MXH NAP 3.98551
153 5ZI2 NAD 4.09357
154 5ZI2 ADP 4.09357
155 1SAY PYR 4.09357
156 1HDR NAD 4.09836
157 1I36 NAP 4.16667
158 5GT9 NAP 4.18251
159 1GV0 NAD 4.19355
160 2II3 CAO 4.19847
161 5NUF NAD 4.21687
162 5NUE NAD 4.21687
163 3HAD NAD 4.22078
164 3VZS CAA 4.28016
165 3VZS NAP 4.28016
166 1GEG NAD 4.29688
167 4IXW IXW 4.33071
168 4TQG NDP 4.33437
169 4YAC NAI 4.3771
170 5O42 BGC 4.37956
171 5O42 NAD 4.37956
172 5O42 9JW 4.37956
173 5BJX NAD 4.38596
174 5BJX UDP 4.38596
175 1H9A NAP 4.38596
176 5THQ NDP 4.41176
177 2EWM NAD 4.41767
178 5T2U NAP 4.43548
179 5NXX 3Q7 4.47761
180 1H5Q NAP 4.5283
181 3RKR NAP 4.58015
182 5B4T NAD 4.61538
183 5B4T 3HR 4.61538
184 3WMX NAD 4.67836
185 1NVM NAD 4.67836
186 5XHA FRU 4.67836
187 4W6Z 8ID 4.67836
188 1D7O TCL 4.7138
189 1D7O NAD 4.7138
190 4PLG NAI 4.79042
191 4PLG OXM 4.79042
192 4NBU NAI 4.8
193 1NNU TCT 4.80349
194 1NNU NAD 4.80349
195 4ITU 1HS 4.83271
196 4ITU NAI 4.83271
197 2VYN NAD 4.83384
198 1GAD NAD 4.84848
199 3BMN NAP 4.86111
200 4CM9 NAP 4.86111
201 5K6A NAP 4.86111
202 3JQ7 NAP 4.86111
203 3JQG NAP 4.86111
204 4CLR NAP 4.86111
205 3JQF NAP 4.86111
206 5JDC NAP 4.86111
207 4CM4 NAP 4.86111
208 4CM8 NAP 4.86111
209 4CMI NAP 4.86111
210 3BMO NAP 4.86111
211 3JQA NAP 4.86111
212 5JCJ NAP 4.86111
213 4CLO NAP 4.86111
214 3BMQ NAP 4.86111
215 3JQB NAP 4.86111
216 3JQ9 NAP 4.86111
217 4CME NAP 4.86111
218 3JQ8 NAP 4.86111
219 5JDI NAP 4.86111
220 3JQA DX4 4.86111
221 3BMN AX3 4.86111
222 4CLR FDB 4.86111
223 3JQF AX2 4.86111
224 3JQ8 DX3 4.86111
225 3JQB DX6 4.86111
226 4CLO XP0 4.86111
227 3JQG AX6 4.86111
228 3JQ7 DX2 4.86111
229 3BMQ AX5 4.86111
230 5K6A 6QT 4.86111
231 5G4L NDP 4.8951
232 5X9D 80F 4.93421
233 1W8S FBP 4.94297
234 1T26 GBD 4.96894
235 1T26 NAI 4.96894
236 1RKX NAD 4.97076
237 1BW9 NAD 4.97076
238 1F8G NAD 4.97076
239 2B5W NAP 4.97076
240 2WYV NAD 4.98084
241 1LTH NAD 5.01567
242 6CI9 NAP 5.01931
243 3OA2 NAD 5.03145
244 2QZZ NAP 5.03145
245 2QZZ EMF 5.03145
246 1FK8 NAD 5.05837
247 5I7S E9P 5.07246
248 5I7S NAD 5.07246
249 3QWI NAP 5.18518
250 3QWI CUE 5.18518
251 2VZ0 D64 5.22388
252 2VZ0 NAP 5.22388
253 2WD7 NAP 5.22388
254 2WD7 VGD 5.22388
255 1SB8 UD2 5.26316
256 1I2B UPG 5.26316
257 1I2B USQ 5.26316
258 1I2B NAD 5.26316
259 1SB8 NAD 5.26316
260 1UWK URO 5.26316
261 1UWK NAD 5.26316
262 4ZU3 4SD 5.28634
263 1A5Z NAD 5.32915
264 1UAY ADN 5.3719
265 2Q1W NAD 5.40541
266 3ICC NAP 5.4902
267 3HB5 NAP 5.50459
268 2WSB NAD 5.51181
269 4J1Q NDP 5.55556
270 5L4S NAP 5.55556
271 5L4S 6KX 5.55556
272 5N2I NAP 5.60345
273 1IY8 NAD 5.61798
274 4MDH NAD 5.68862
275 1LDN NAD 5.6962
276 5MDH NAD 5.70571
277 3O9Z AKG 5.76923
278 3O9Z NAD 5.76923
279 1SOW NAD 5.79268
280 5V6F MAN BMA MAN 5.7971
281 1GUZ NAD 5.80645
282 5IN4 6CK 5.84795
283 5IN4 GDP 5.84795
284 5IN4 NAP 5.84795
285 1VKO NAD 5.84795
286 4PLT NAI 5.84795
287 4PLT OXM 5.84795
288 3CF6 SP1 5.84795
289 4YAG NAI 5.88235
290 3RJ5 NAD 5.90551
291 4B7X NAP 5.95238
292 3ORF NAD 5.9761
293 2JAH NDP 6.07287
294 4MTI 2DX 6.08696
295 3KO8 NAD 6.08974
296 3O26 NDP 6.10932
297 4CQM NAP 6.13027
298 4KWI 1TJ 6.14035
299 4KWI NAP 6.14035
300 2PD4 NAD 6.18182
301 2PD4 DCN 6.18182
302 1A27 NAP 6.22837
303 4NBT NAD 6.25
304 5Z75 NAD 6.42202
305 5MSO NAP 6.43275
306 1RM0 D6P 6.43275
307 1RM0 NAI 6.43275
308 2BD0 NAP 6.55738
309 1RPN NDP 6.56716
310 1U1I NAD 6.63265
311 4ZA2 NAD 6.71937
312 4K26 NDP 6.88406
313 4K26 SFF 6.88406
314 5CG1 NAD BBN 6.88525
315 3B1F NAD 6.89655
316 5OJI NAP 6.92308
317 5OJI ISN 6.92308
318 2VUT NAD 6.97674
319 4RF2 NAP 6.98529
320 5X2N ALA 7.01754
321 1X14 NAD 7.01754
322 3AY6 BGC 7.0632
323 3AY6 NAI 7.0632
324 1XSE NDP 7.11864
325 1J0X NAD 7.22892
326 3GEG NAD 7.28745
327 2VN9 GVD 7.30897
328 2C5A NAD 7.30994
329 2C5A GDC 7.30994
330 4DC2 ADE 7.30994
331 3CH6 311 7.34266
332 3CH6 NAP 7.34266
333 5A04 BGC 7.37463
334 5A04 NDP 7.37463
335 4OM8 NAD 7.44337
336 1O6Z NAD 7.59076
337 1BXK NAD 7.60234
338 4DPL NAP 7.60234
339 3TN7 NJP 7.7821
340 6CEP OXM 7.78443
341 6CEP NAD 7.78443
342 2DKN NAI 7.84314
343 5XWV 8H6 7.8629
344 5XWV NDP 7.8629
345 2D2I NAP 7.89474
346 3B20 NAD 7.9646
347 3QX9 ATP 7.97101
348 4HXY NDP 7.99087
349 1O5I NAD 8.03213
350 2A92 NAI 8.09969
351 1LLU NAD 8.18713
352 2HJR APR 8.23171
353 1VL8 NAP 8.2397
354 3O03 NAP 8.24742
355 4JP3 CIT 8.3682
356 9LDB NAD 8.43373
357 9LDT NAD 8.43373
358 5YJS SAL 8.47953
359 1G6H ADP 8.56031
360 1RM4 NDP 8.60534
361 1PR9 NAP 9.01639
362 3D3W NAP 9.01639
363 2Q1S NAI 9.06433
364 3GGO NAI 9.06433
365 3GGO ENO 9.06433
366 2EV9 SKM 9.12547
367 1GEE NAD 9.1954
368 2OS2 OGA 9.35672
369 5LY1 PPI 9.35672
370 6C4T NA7 9.35672
371 3H4V DVP 9.375
372 3H4V NAP 9.375
373 1HYH NAD 9.38511
374 3SJ7 NDP 9.52381
375 1DSS NAD 9.60961
376 1DCP HBI 9.61539
377 1UXG FUM 9.70874
378 1UXG NAD 9.70874
379 2Q2V NAD 9.80392
380 3FXU TSU 9.83607
381 4FN4 NAD 9.84252
382 1HYE NAP 9.90415
383 3H9E NAD 9.94152
384 2B4R NAD 9.94152
385 2B4R AES 9.94152
386 5K4W THR 9.96885
387 5K4W NAI 9.96885
388 2JAP NDP 10.1215
389 5Z2L NDP 10.2041
390 2CFC NAD 10.4
391 3L4S NAD 10.4167
392 3L4S 3PG 10.4167
393 1XHL NDP 10.4377
394 3OID NDP 10.4651
395 1BDB NAD 10.4693
396 5OVL NAP 10.5263
397 1AE1 NAP 10.6227
398 1EDO NAP 10.6557
399 3CL7 HYN 10.7143
400 2AE2 NAP 10.7692
401 2AE2 PTO 10.7692
402 3V1U NAD 10.8187
403 2V6G NAP 10.8187
404 2HK9 ATR 10.9091
405 3ZV6 4HB 11.032
406 3ZV6 NAD 11.032
407 4G5H UD7 11.4035
408 4G5H NAP 11.4035
409 4PIV NDP 11.4035
410 1E5Q NDP 11.4035
411 1E3W NAD 11.4943
412 2OOR NAD 11.4943
413 2JL1 NAP 11.4983
414 1E6W NAD 11.5385
415 5MLR NAP 11.9883
416 5MLR GRQ 11.9883
417 4URF NAD 12.0968
418 2DTX BMA 12.5
419 4U7W NDP 12.5731
420 4OJP MAL 12.5731
421 5A1T NAI 12.61
422 5A1T OXM 12.61
423 2GDZ NAD 12.7341
424 5O98 NAP 12.9338
425 2PZM NAD 13.0303
426 2PZM UDP 13.0303
427 3U4C NDP 13.1673
428 1E7S NAP 13.3956
429 1P77 ATR 13.9706
430 1XG5 NAP 13.9785
431 2BKA NDP 14.0496
432 5OVK NDP 14.0625
433 3LU1 NAD 14.3275
434 4QED NAP 14.5161
435 3AFN NAP 14.7287
436 5DF1 58X 14.9123
437 5DF1 NAP 14.9123
438 1G0N NDP 15.5477
439 1G0N PHH 15.5477
440 5L4L NAP 15.7895
441 5L4L 7OX 15.7895
442 5YSS NAD 16.4062
443 1Q7B NAP 16.8033
444 5OOH NAP 16.9903
445 5OOH 9ZZ 16.9903
446 3A4V PYR 17.3502
447 3A4V NAD 17.3502
448 1ZEM NAD 17.5573
449 1OAA OAA 17.7606
450 2Q46 NAP 18.1818
451 3QV1 NAD 18.2927
452 3I6I NDP 18.4211
453 2BGM NAJ 18.705
454 1HDC CBO 18.8976
455 1UZN NAP 19.0283
456 4ZVV NAD 19.5783
457 4ZVV GN0 19.5783
458 4OSP NAP 20.1521
459 5Y1G AKB 20.7317
460 5Y1G NAD 20.7317
461 5WUW NAP 21.6028
462 3OIG NAD 21.6374
463 2B4Q NAP 23.0994
464 3WXB NDP 24.7312
465 6BWL NAD 25
466 4GLL NAD 25.5193
467 1JAY NAP 26.4151
468 1KEW NAD 27.4854
469 1KEW TYD 27.4854
470 1EK6 UPG 30.4094
471 1EK6 NAI 30.4094
472 1Z45 NAD 30.9942
473 1UDB NAD 31.0651
474 1UDB UFG 31.0651
475 4ZRN NAD 33.9744
476 4ZRN UPG 33.9744
477 2PK3 A2R 34.891
478 5ZZ6 NAD 35.5769
479 1WVG APR 35.9649
480 6DNT NAD 36.2573
481 1GY8 NAD 36.5497
482 2C29 DQH 42.1365
483 2C29 NAP 42.1365
484 1Y1P NMN AMP PO4 46.7836
485 4R1S NAP 48.368
Pocket No.: 2; Query (leader) PDB : 4PVD; Ligand: NDP; Similar sites found with APoc: 13
This union binding pocket(no: 2) in the query (biounit: 4pvd.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 6F97 FAD 1.75439
2 3ZPG 5GP 2.33918
3 4CPB GAL CN8 2.47934
4 4JGP PYR 2.76498
5 3QPB URA 3.90071
6 5KR7 6X9 4.67836
7 1TE2 PGA 5.30973
8 1P7T PYR 5.55556
9 6BXO SAH 5.8104
10 1KSK URA 6.41026
11 4B1L FRU 10.9091
12 3QVL 5HY 11.4286
13 5YEC ATP 12.605
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