-->
Receptor
PDB id Resolution Class Description Source Keywords
4R38 1.6 Å EC: 2.7.13.3 LOV DOMAIN FROM ERYTHROBACTER LITORALIS EL346 BLUE-LIGHT ACT HISTIDINE KINASE ERYTHROBACTER LITORALIS HTCC2594 RIBOFLAVIN LIGHT-ACTIVATED LOV DOMAIN PHOTORECEPTOR SENSTRANSDUCTION SIGNAL TRANSDUCTION SIGNALING PROTEIN
Ref.: FULL-LENGTH STRUCTURE OF A MONOMERIC HISTIDINE KINA REVEALS BASIS FOR SENSORY REGULATION. PROC.NATL.ACAD.SCI.USA V. 111 17839 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
RBF A:201;
D:201;
C:201;
B:201;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
376.364 C17 H20 N4 O6 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4R38 1.6 Å EC: 2.7.13.3 LOV DOMAIN FROM ERYTHROBACTER LITORALIS EL346 BLUE-LIGHT ACT HISTIDINE KINASE ERYTHROBACTER LITORALIS HTCC2594 RIBOFLAVIN LIGHT-ACTIVATED LOV DOMAIN PHOTORECEPTOR SENSTRANSDUCTION SIGNAL TRANSDUCTION SIGNALING PROTEIN
Ref.: FULL-LENGTH STRUCTURE OF A MONOMERIC HISTIDINE KINA REVEALS BASIS FOR SENSORY REGULATION. PROC.NATL.ACAD.SCI.USA V. 111 17839 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 18 families.
1 4R38 - RBF C17 H20 N4 O6 Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 18 families.
1 4R38 - RBF C17 H20 N4 O6 Cc1cc2c(cc....
50% Homology Family (20)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 6GB3 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 6GAY - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
3 6GBV - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
4 6GBA - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
5 2PR5 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
6 1N9N - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
7 2Z6C - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
8 4EES - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
9 4EET - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
10 4NXE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
11 4EER - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
12 4NXG - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
13 4NXF - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
14 4EEP - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
15 4EEU - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
16 2V1A - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
17 2V0U - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
18 5DKK - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
19 4R38 - RBF C17 H20 N4 O6 Cc1cc2c(cc....
20 2Z6D - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RBF; Similar ligands found: 14
No: Ligand ECFP6 Tc MDL keys Tc
1 RBF 1 1
2 FMN 0.75641 0.876712
3 RS3 0.74026 0.942029
4 DLZ 0.546667 0.885714
5 1VY 0.525641 0.871429
6 C3F 0.523256 0.816901
7 LFN 0.513889 0.712121
8 CF4 0.511364 0.805556
9 FAD 0.460938 0.790123
10 FAS 0.460938 0.790123
11 FAE 0.457364 0.780488
12 RLP 0.438202 0.833333
13 FO1 0.423913 0.871429
14 HDF 0.423913 0.871429
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: 492
This union binding pocket(no: 1) in the query (biounit: 4r38.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 4K55 H6P None
2 1SWG BTN None
3 6GNO XDI None
4 1UO5 PIH None
5 2BOS GLA GAL GLC None
6 2YKL NLD None
7 4MA6 28E None
8 4Z28 BTN None
9 5OCG 9R5 None
10 2HO2 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU None
11 4GGZ BTN None
12 2BOS GLA GAL None
13 5F6U 5VK None
14 1GZW GAL BGC None
15 1MDC PLM None
16 6FA4 D1W None
17 1RV1 IMZ None
18 3RDO BTN None
19 1GEG GLC None
20 4IPH 1FJ None
21 4CPH LH4 None
22 4E2J MOF None
23 2YIP YIO None
24 1C1L GAL BGC None
25 5UFS 1TA None
26 4WG0 CHD None
27 5OF1 SAL None
28 1TT8 PHB None
29 4BJ8 BTN None
30 3IWD M2T None
31 5TVI MYR None
32 3E85 BSU None
33 4RT1 C2E None
34 1MID LAP None
35 5Y02 HBX None
36 5LXB 7A9 None
37 2E1A MSE None
38 4Y24 TD2 None
39 3OYW TDG None
40 5CLO NS8 None
41 5NLD LBT None
42 5B09 4MX None
43 1ZEI CRS None
44 2AC7 ADN None
45 1UO4 PIH None
46 5Z3I ADE 1.42857
47 2HFN FMN 1.42857
48 2AGC DAO 1.42857
49 1SR7 MOF 1.42857
50 2WQN ADP 1.42857
51 4RYV ZEA 1.42857
52 1GYM MYG 1.42857
53 4I9A NCN 1.42857
54 4YMJ 4EJ 1.42857
55 1W6O LAT 1.49254
56 1W6P NDG GAL 1.49254
57 2AIB ERG 2.04082
58 5DYO FLU 2.14286
59 1QKQ MAN 2.14286
60 4XTX 590 2.14286
61 5HCY 60D 2.14286
62 3H2K BOG 2.14286
63 5A89 FMN 2.14286
64 5D9G GLU ASN LEU TYR PHE GLN 2.14286
65 2YAK OSV 2.14286
66 5L7G LYS SER LEU LEU GLN GLN LEU LEU THR GLU 2.14286
67 4OCX MT1 2.14286
68 5HV0 AKG 2.14286
69 5K4W THR 2.14286
70 6HDT BTN 2.25564
71 1F9V ADP 2.85714
72 6EWZ APC 2.85714
73 1SDW IYT 2.85714
74 2AG4 LP3 2.85714
75 2AG4 OLA 2.85714
76 4OIT MAN 2.85714
77 5BVE 4VG 2.85714
78 1OJJ GLC GAL 2.85714
79 1OJK GLC BGC 2.85714
80 2QK4 ATP 2.85714
81 3KU0 ADE 2.85714
82 5C5T AKG 2.85714
83 4NPL AKG 2.85714
84 3QPB URA 2.85714
85 2ZMF CMP 2.85714
86 1SGJ OAA 2.85714
87 4H2W AMP 2.85714
88 5Z75 NAD 2.85714
89 4B2Z P5S 2.85714
90 4XCP PLM 2.85714
91 3U40 ADN 2.85714
92 1KYZ FER 2.85714
93 5JGA 6KC 2.85714
94 4H2V AMP 2.85714
95 5TUF TDC 2.85714
96 3MF2 AMP 2.85714
97 5DG2 GAL GLC 2.96296
98 4XF6 ADP 3.2967
99 2G30 ALA ALA PHE 3.57143
100 4MOB ADP 3.57143
101 4LED XXR 3.57143
102 5H9P TD2 3.57143
103 5A5W GUO 3.57143
104 4Z3E GAL NGA GLA BGC GAL 3.57143
105 3O5N BR0 3.57143
106 3OQJ 3CX 3.57143
107 3R9V DXC 3.57143
108 4WVW SLT 3.57143
109 3WW2 SF9 3.57143
110 1W62 PYC 3.57143
111 2VAR KDG 3.57143
112 6F6D AKG 3.57143
113 3T58 FAD 3.57143
114 4UWJ MYA 3.57143
115 4UWJ 7L5 3.57143
116 5OD2 GLC 3.57143
117 4Y8D 49J 3.57143
118 5DQ8 FLF 3.57143
119 5XVG 8FX 3.57143
120 3EWC MCF 3.57143
121 1G0N PHH 3.57143
122 1G0N NDP 3.57143
123 2VAR KDF 3.57143
124 6FOF LAT 3.57143
125 4OHU 2TK 3.57143
126 4OHU NAD 3.57143
127 2JDR L20 3.57143
128 2JDR GLY ARG PRO ARG THR THR SER PHE ALA GLU 3.57143
129 2Z77 HE7 3.59712
130 2A4W BLM 3.62319
131 2BYC FMN 3.64964
132 3EW2 BTN 3.7037
133 1UYY BGC BGC 3.81679
134 3A6T 8OG 3.87597
135 5OWC AYZ 4.09836
136 43CA NPO 4.2735
137 4F06 PHB 4.28571
138 3JU6 ANP 4.28571
139 4WHZ 3NL 4.28571
140 3GD8 GOL 4.28571
141 1OUK 084 4.28571
142 2JIG PD2 4.28571
143 4O9S 2RY 4.28571
144 3WG3 A2G GAL NAG FUC 4.28571
145 4YRD 3IT 4.28571
146 4TWP AXI 4.28571
147 4L4J NAG NAG BMA MAN NAG 4.28571
148 1U3R 338 4.28571
149 4POS NAG SIA GAL 4.28571
150 1D6H COA 4.28571
151 4CS4 AXZ 4.28571
152 2Y6Q I7T 4.28571
153 1O5R FR9 4.28571
154 4LOO SB4 4.28571
155 1IIU RTL 4.28571
156 6FXR AKG 4.28571
157 4A3R CIT 4.28571
158 1RYD GLC 4.28571
159 1ZGS XMM 4.28571
160 2R09 4IP 4.28571
161 4CS4 ANP 4.28571
162 5U97 PIT 4.28571
163 12AS AMP 4.28571
164 3PDT ADP 4.28571
165 4I4S LAT 4.28571
166 6F4W FMC 4.28571
167 3VHH VHH 4.87805
168 1ELI PYC 5
169 4BG4 ADP 5
170 3PUR 2HG 5
171 3H5N ATP 5
172 3H9A PPY 5
173 4WOE ADP 5
174 3H7J PPY 5
175 3GLC R5P 5
176 1VHW ADN 5
177 1GT4 UNA 5
178 5CIC 51R 5
179 6F5W KG1 5
180 2I4O ATP 5
181 6A1G 9OL 5
182 3VQ2 LP4 LP5 MYR DAO 5
183 1LOX RS7 5
184 5IXG OTP 5
185 3OV6 MK0 5
186 4TS1 TYR 5
187 1PWB GLC 5
188 4BVA T3 5
189 5DRB 5FJ 5
190 1BYG STU 5
191 5TO8 7FM 5
192 4WNK 453 5
193 5ODY 9SK 5.07246
194 2TPI ILE VAL 5.17241
195 4JX1 CAH 5.71429
196 1M15 ADP 5.71429
197 1M15 ARG 5.71429
198 5XHA FRU 5.71429
199 3H0L ADP 5.71429
200 4JX1 CAM 5.71429
201 5D48 L96 5.71429
202 1ON3 DXX 5.71429
203 3B6R ADP 5.71429
204 5G48 1FL 5.71429
205 1R6N 434 5.71429
206 4QXB OGA 5.71429
207 1YFS ALA 5.71429
208 3G5D 1N1 5.71429
209 1VJY 460 5.71429
210 4MRP GSH 5.71429
211 1UWK URO 5.71429
212 1UWK NAD 5.71429
213 6AC9 ANP 5.71429
214 4DC2 ADE 5.71429
215 3SHZ 5CO 5.71429
216 3PP0 03Q 5.71429
217 3JQ3 ADP 5.71429
218 5EW9 5VC 5.71429
219 3F70 MLZ 5.71429
220 5H2U 1N1 5.71429
221 4ZSI GLP 5.71429
222 5VNF VAL THR SER VAL VAL 5.71429
223 5O9W AKG 5.71429
224 2J3M PRI 5.71429
225 3GL0 HXX 5.71429
226 3W68 VIV 5.71429
227 4DQ2 BTX 5.71429
228 1VKF CIT 5.71429
229 1KAR HSM 5.71429
230 5V1B 8UY 5.71429
231 3HKW IX6 5.71429
232 5OSW DIU 5.71429
233 1PNF NDG NAG 5.71429
234 3ZH4 FLC 5.71429
235 1Y0G 8PP 5.71429
236 1ZHX HC3 5.71429
237 2D5X L35 6.16438
238 1L0I PSR 6.41026
239 6E1Q CFA 6.42857
240 6D61 4AA 6.42857
241 3NZ1 3NY 6.42857
242 2QHV OC9 6.42857
243 4I94 ANP 6.42857
244 1X0P FAD 6.42857
245 4ONA UW1 6.42857
246 2QHS OCA 6.42857
247 4X9X OLA 6.42857
248 5LWY OLB 6.42857
249 2OVW CBI 6.42857
250 5B0I BOG 6.42857
251 4M26 AKG 6.42857
252 5MBC FMN 6.42857
253 3NNF AKG 6.42857
254 5AWM ANP 6.42857
255 5CX6 CDP 6.42857
256 2XVD AS6 6.42857
257 1Q11 TYE 6.42857
258 1T0S BML 6.42857
259 5UR1 YY9 6.42857
260 2PYW SR1 6.42857
261 3A5Y KAA 6.42857
262 4D1J DGJ 6.42857
263 3A5Z KAA 6.42857
264 4WN5 MVC 6.95652
265 3O01 DXC 7.14286
266 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 7.14286
267 1VRP ADP 7.14286
268 1WUB OTP 7.14286
269 5JSP DQY 7.14286
270 5U9J GER 7.14286
271 2PNC CLU 7.14286
272 1LRI CLR 7.14286
273 3HP9 CF1 7.14286
274 3IES M24 7.14286
275 1BC5 ACE ASN TRP GLU THR PHE 7.14286
276 2YIV NBN 7.14286
277 4P5Z Q7M 7.14286
278 3BWN PMP 7.14286
279 1KC7 PPR 7.14286
280 1R5L VIV 7.14286
281 2J8R MSL 7.14286
282 5TCI MLI 7.14286
283 1H8S AIC 7.14286
284 2VDY HCY 7.14286
285 3EXS 5RP 7.14286
286 2QPU QPU 7.14286
287 2W5P CL8 7.38255
288 1YRX FMN 7.43802
289 3ZXE PGZ 7.5188
290 4MGA 27L 7.85714
291 2F7A BEZ 7.85714
292 1XZ3 ICF 7.85714
293 1ERB ETR 7.85714
294 3DLG GWE 7.85714
295 5LX9 OLB 7.85714
296 2YNE NHW 7.85714
297 2YNE YNE 7.85714
298 4P8K 38C 7.85714
299 4P8K FAD 7.85714
300 3UNG ADP 7.85714
301 5F1R 42O 7.85714
302 4L9I 8PR 7.85714
303 3VV1 GAL FUC 7.85714
304 4QCK ASD 7.85714
305 2JLD AG1 7.85714
306 5DBX ANP 7.85714
307 4MG8 27J 7.85714
308 4N70 2HX 7.85714
309 1F5F DHT 7.85714
310 1PS9 FAD 7.85714
311 1KDK DHT 7.85714
312 5L13 6ZE 7.85714
313 4MGB XDH 7.85714
314 4MG7 27H 7.85714
315 3TDV GDP 7.85714
316 5IF4 6AK 7.85714
317 2C9O ADP 7.85714
318 4TUZ 36J 7.85714
319 1S8G DAO 8.26446
320 5KJW 53C 8.57143
321 6FBA D48 8.57143
322 6GWR FEW 8.57143
323 1DZK PRZ 8.57143
324 2GC0 PAN 8.57143
325 5FXD H7Y 8.57143
326 5W1E PHB 8.57143
327 1NW4 IMH 8.57143
328 2WEL K88 8.57143
329 2ZV2 609 8.57143
330 1ZNY GDP 8.57143
331 5EPA AKG 8.57143
332 4XCZ T3Q 8.57143
333 2B3B BGC 8.57143
334 4JWK CTN 8.57143
335 4WAS NAP 8.57143
336 6DW2 HD4 8.57143
337 5Y72 DST 8.57143
338 4YUS FMN 8.57143
339 4F4P 0SB 8.57143
340 4XCB AKG 9.28571
341 1U6R ADP 9.28571
342 2AL2 PEP 9.28571
343 1QY1 PRZ 9.28571
344 4B0T ADP 9.28571
345 2BCG GER 9.28571
346 4OPC PGT 9.28571
347 4OPC FDA 9.28571
348 4RQL SNE 9.28571
349 3L9R L9R 9.28571
350 4MIB 28M 9.28571
351 5DZT AMP 9.28571
352 3L9R L9Q 9.28571
353 2RKV ZBA 9.28571
354 3GD9 GLC BGC BGC BGC 9.28571
355 1XV5 UDP 9.28571
356 5Y79 3PG 9.28571
357 5GLT BGC GAL NAG GAL 9.28571
358 5FI3 NAP 9.28571
359 1I06 TZL 9.28571
360 3SAO DBH 10
361 2CIX CEJ 10
362 5X7Q GLC GLC GLC GLC GLC 10
363 3FAL REA 10
364 3SAO NKN 10
365 4CQE CQE 10
366 6GR0 F8W 10
367 4OAV ACP 10
368 3E3U NVC 10
369 1Y75 NAG 10.1695
370 5TBM 79A 10.4348
371 1OGX EQU 10.687
372 6CB2 OLC 10.7143
373 5W75 SUC 10.7143
374 2Z3U CRR 10.7143
375 4GC1 MAN MAN 10.7143
376 2ARC ARA 10.7143
377 6GMN F4E 10.7143
378 4REI 3MV 10.7143
379 5TH5 MET 10.7143
380 5DEY 59T 10.7143
381 3E9I XAH 10.7143
382 1K97 CIR 10.7143
383 1K97 ASP 10.7143
384 1G51 AMP 10.7143
385 4BKS X6C 10.7143
386 1EK6 NAI 10.7143
387 1EK6 UPG 10.7143
388 1KJ1 MAN 11.0092
389 1BWO LPC 11.1111
390 5YJS SAL 11.4286
391 1ZOY UQ1 11.4286
392 3FUR Z12 11.4286
393 6FLZ MMA 11.4286
394 2P4Y C03 11.4286
395 3KMZ EQO 11.4286
396 2HFK E4H 11.4286
397 1ODJ GMP 11.4286
398 2PEL LBT 11.4286
399 5LVP ATP 11.4286
400 3V8S 0HD 11.4286
401 5MRH Q9Z 12.1429
402 3I27 SID 12.1429
403 1J3R 6PG 12.1429
404 2QES ADE 12.1429
405 2GBB CIT 12.1429
406 5Y1G AKB 12.1429
407 5Y1G NAD 12.1429
408 1U29 I3P 12.4031
409 5C1M OLC 12.8
410 3CF6 SP1 12.8571
411 3ZJX BOG 12.8571
412 1I1E DM2 12.8571
413 1W8S FBP 12.8571
414 4XYM A12 12.8571
415 2RHQ GAX 12.8571
416 1GPM AMP 12.8571
417 5TPV TYD 13.0719
418 3CBC DBS 13.5714
419 5W4W 9WG 13.5714
420 4KBA 1QM 13.5714
421 3FW4 CAQ 13.5714
422 2Y9G LBT 13.5714
423 2Y9G LAT 13.5714
424 3G1Z AMP 13.5714
425 5H9Y BGC BGC BGC BGC 13.5714
426 2VYT MLZ 13.5714
427 1H2M OGA 13.5714
428 2Y88 2ER 13.5714
429 5KD6 LBU 13.5714
430 4B7E OGA 13.5714
431 1H2K OGA 13.5714
432 2ADA HPR 13.5714
433 1FDJ 13P 13.5714
434 5TSH ANP 13.5714
435 1LNX URI 13.5802
436 2Y69 CHD 13.9535
437 4O4Z N2O 14.2857
438 1M5W DXP 14.2857
439 5JWP AKG 14.2857
440 3QRC SCR 15
441 3PE2 E1B 15
442 3BXO UPP 15
443 4ITH RCM 15
444 5VM6 9EG 15.3285
445 3KV5 OGA 15.7143
446 1EWF PC1 15.7143
447 5MWE TCE 15.7143
448 3GKJ HC3 15.7143
449 4QDF 30Q 15.7143
450 4YSW NAI 16.4286
451 4YSW FAD 16.4286
452 4JH6 FCN 16.6667
453 4UMX VVS 17.1429
454 4UMX NAP 17.1429
455 1YKD CMP 17.1429
456 3RGA LSB 17.1429
457 2VDJ HSE 17.8571
458 4X6F 3XU 18.0952
459 5Z84 CHD 18.3673
460 5ZCO CHD 18.3673
461 5W97 CHD 18.3673
462 1GQG DCD 18.5714
463 2VL1 GLY GLY 19.2857
464 4RD0 GDP 19.2857
465 3HQ9 OXL 19.2857
466 2R0D 4IP 19.2857
467 5L2R MLA 19.2857
468 1WPY BTN 20
469 4RF7 ARG 20.7143
470 4F9C 0SX 20.7143
471 1T36 ADP 20.7143
472 2DXU BT5 20.7143
473 3EFS BTN 20.7143
474 3GFZ FMN 21.4286
475 3KP6 SAL 22.1429
476 2XN5 FUN 22.8571
477 3G08 FEE 23.2323
478 3FW9 SLX 23.5714
479 4MNS 2AX 25
480 2Z9V PXM 25.7143
481 5U98 1KX 30.303
482 5SVV FMN 40.146
483 3IS2 FAD 44.2857
484 3D72 FAD 44.2857
485 2WKQ FMN 44.2857
486 4WUJ FMN 44.2857
487 5DJU FMN 44.2857
488 5DJT FMN 44.2857
489 5EFW FMN 44.2857
490 3P7N FMN 45.7143
491 6GG9 FMN 47.1429
492 4HIA FMN 47.8571
Pocket No.: 2; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: 157
This union binding pocket(no: 2) in the query (biounit: 4r38.bio6) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 3T2W BTN None
2 1BHX ASP PHE GLU GLU ILE None
3 5TZO 7V7 None
4 6CZI 38E None
5 4H07 IPH None
6 4MMP SLB None
7 2IUW AKG None
8 2F01 BTN None
9 2F01 BTQ None
10 5ET3 60C None
11 4HBM 0Y7 None
12 5WS9 OXL None
13 5C3R AKG None
14 5C3R HMU None
15 5N0L ILE None
16 5TFZ 7BC 1.42857
17 6G33 5ID 1.42857
18 3K5I ADP 1.42857
19 1VR0 3SL 1.42857
20 2YY7 NAD 1.42857
21 2V7O DRN 2.14286
22 5K21 6QF 2.14286
23 4IN9 SER TRP PHE PRO 2.14286
24 2VN9 GVD 2.14286
25 4UDB CV7 2.14286
26 2YLD CMO 2.3622
27 3LGG CFE 2.85714
28 4Y2B EPK 2.85714
29 4G31 0WH 2.85714
30 4B7S QLE 2.85714
31 5M8T 0TR 2.85714
32 1W2D ADP 2.85714
33 3N26 ARG 2.85714
34 6G5J EM8 2.85714
35 6F8A HIS 2.85714
36 4BT5 23B 2.85714
37 4LBP 1WG 3
38 4BCS BTN 3.2
39 3LXI CAM 3.57143
40 2B9I ADP 3.57143
41 5M0T AKG 3.57143
42 3KV4 OGA 3.57143
43 5MZI FYK 3.57143
44 5NBP BGC BGC BGC 3.57143
45 3NB0 G6P 3.57143
46 2ZUX RAM 3.57143
47 2B9J ADP 3.57143
48 4U0W 16G 3.57143
49 3WUC GLC GAL 3.64964
50 1M48 FRG 3.7594
51 6A0S NDP 4.28571
52 1WW5 SGA BGC 4.28571
53 3ZOK GLY 4.28571
54 3PUA OGA 4.28571
55 4Z87 5GP 4.28571
56 1X8X TYR 4.28571
57 6FS0 E4W 4.28571
58 1MT1 AG2 4.42478
59 1FHX 4IP 4.65116
60 2PT9 2MH 4.98442
61 3N9P OGA 5
62 3N9O OGA 5
63 3N9Q OGA 5
64 5NXX 3Q7 5
65 1UW1 ADP 5
66 1P72 THM 5
67 5CKS GAL 5
68 4BTK DTQ 5
69 1CZA ADP 5
70 1RJW ETF 5
71 3ROE THM 5
72 3DLS ADP 5
73 4I3G BGC 5
74 5IM3 DTP 5
75 3VSV XYP 5
76 4N14 WR7 5.71429
77 1KAH HIS 5.71429
78 2D6M LBT 5.71429
79 5INJ 6C7 5.71429
80 5FLJ QUE 5.71429
81 2F6U CIT 5.71429
82 3NV3 GAL NAG MAN 5.71429
83 2XMY CDK 5.71429
84 2J3M ATP 5.71429
85 5Z0A NAG 5.71429
86 2UW1 GVM 5.71429
87 4NS0 PIO 6.01504
88 4TW7 37K 6.25
89 4KAX 4IP 6.42857
90 4IMO PWZ 6.42857
91 3PGU OLA 6.42857
92 2VD9 IN5 6.42857
93 1LBF 137 6.42857
94 2VD9 EPC 6.42857
95 4FFG LBS 6.42857
96 4FFG 0U8 6.42857
97 5MKG C2E 6.42857
98 2RG0 CBI 6.42857
99 1OCU PIB 7.14286
100 5H9Q TD2 7.14286
101 4YZ5 SLT 7.14286
102 6M7X JD7 7.14286
103 5LUN OGA 7.14286
104 4B5W PYR 7.14286
105 4OCT AKG 7.14286
106 3GE7 AFQ 7.14286
107 3ZQE DXC 7.14286
108 2Y7P SAL 7.14286
109 2IYG FMN 7.25806
110 4JNJ BTN 7.82609
111 5VLC HSO 7.85714
112 1UA4 GLC 7.85714
113 1UA4 BGC 7.85714
114 5EVY SAL 7.85714
115 1SU2 ATP 7.85714
116 4TV1 36M 7.85714
117 4D4U FUC 7.85714
118 5HYR EST 7.85714
119 2J5B TYE 7.85714
120 6BVM EBV 7.85714
121 1QFT HSM 7.85714
122 6BVK EAV 7.85714
123 5WGQ EST 7.85714
124 6DIO CIT 8.57143
125 3C0G 3AM 8.57143
126 2AK3 AMP 8.57143
127 2HPL ASP ASP LEU TYR GLY 9
128 4O4K 2PK 9.28571
129 1C9K 5GP 9.28571
130 3A16 PXO 9.28571
131 5E58 CPZ 9.28571
132 3WMX NAD 9.28571
133 6CAY ERG 9.28571
134 5ACM MBT 9.90991
135 3WV6 GAL BGC 10
136 2GU8 796 10
137 4WVO 3UZ 10
138 3BRN SRO 10.7143
139 3G9E RO7 11.4286
140 5FYR INS 11.4286
141 3B00 16A 12.1429
142 4IPN 1FT 12.1429
143 5I0U DCY 13.5714
144 5AX9 4KT 13.5714
145 2IF8 ADP 14.2857
146 3M3E GAL A2G NPO 15
147 3E7S AT2 15
148 6BU0 IHP 15.2672
149 3ZNN 4WL 16.4286
150 3ZNN FAD 16.4286
151 3D91 REM 16.4286
152 1TZD ADP 17.1429
153 3ZGJ RMN 18.5714
154 3Q60 ATP 19.2857
155 5TSU CYS 19.2857
156 3BJE URA 20.7143
157 4RW3 TDA 25
Pocket No.: 3; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: 51
This union binding pocket(no: 3) in the query (biounit: 4r38.bio6) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 1XE7 GUN None
2 5LN8 GAL None
3 1TUK PGM None
4 1IGJ DGX 2.14286
5 1SBR VIB 2.14286
6 2X32 OTP 2.14286
7 4YLZ LAT NAG GAL 3.57143
8 3W5N RAM 3.57143
9 5NFB 8VT 3.57143
10 3A4V PYR 3.57143
11 3A4V NAD 3.57143
12 1FAO 4IP 3.96825
13 2ET1 GLV 4.28571
14 3LHS SF8 4.28571
15 1AUA BOG 4.28571
16 4O12 2QG 5
17 3KC1 2T6 5
18 5VAD 91Y 5
19 2TPS TPS 5.71429
20 5IVE 6E8 5.71429
21 5EOB 5QQ 6.42857
22 4HWS 1B3 6.42857
23 5UIU 8CG 6.42857
24 5N17 8FK 6.52174
25 3BJC WAN 7.14286
26 5AE2 FAD 7.14286
27 5AE2 FYC 7.14286
28 2I74 MAN MAN MAN MAN 7.14286
29 2QE4 JJ3 7.85714
30 4URX FK1 7.85714
31 2B3B GLC 8.57143
32 1TDF FAD 10
33 4BFW ZVW 10.7143
34 3RGZ BLD 10.7143
35 4W9F 3JU 10.7143
36 3RWP ABQ 11.4286
37 4HEE 14R 11.4286
38 1FM9 570 11.4286
39 5AZC PGT 12.8571
40 3E2M E2M 12.8571
41 2XUM OGA 12.8571
42 5KD6 6C7 13.5714
43 2WA4 069 13.5714
44 1Y7P RIP 14.2857
45 5AIG VPR 14.4
46 2HW1 FRU 17.1429
47 5ZCO PGV 18.3673
48 2DYR PGV 18.3673
49 1WBI BTN 20.155
50 1T36 ORN 20.7143
51 3RV5 DXC 28.0899
Pocket No.: 4; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4r38.bio5) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: 54
This union binding pocket(no: 5) in the query (biounit: 4r38.bio5) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 5FQ0 FLC 1.75439
2 4DDY DN6 2.14286
3 1V7R CIT 2.14286
4 6F5U CQN 2.14286
5 2ZSC BTN 2.85714
6 4IDT T28 2.85714
7 6CAM BGC 2.85714
8 3AVR OGA 2.85714
9 1PVN MZP 3.57143
10 1Z6K OAA 4.28571
11 2CHG ANP 4.28571
12 3M2W L8I 4.28571
13 5IH9 6BF 4.28571
14 1S14 NOV 4.28571
15 5N7O 69Y 4.52489
16 4YV5 SVR 4.91803
17 2V9M CIT 5
18 3HQP OXL 5
19 3ZDS M8O 5
20 4NFN 2KC 5
21 6C0B PAM 5.71429
22 5IHE D5M 5.71429
23 6F3G CJN 5.71429
24 2R0H CTO 5.71429
25 3LQV ADE 6.08696
26 4A38 BZS 6.42857
27 4L80 OXL 6.42857
28 4U03 TLL 7.14286
29 4U03 GTP 7.14286
30 1DZT TPE 7.14286
31 5MJA 7O3 7.14286
32 5LIA 6XN 7.14286
33 1HSL HIS 7.85714
34 3UU7 2OH 7.85714
35 2QZO KN1 7.85714
36 1XMY ROL 8.57143
37 3VV5 SLZ 8.57143
38 5OLK DTP 8.57143
39 2OG7 SIN 9.28571
40 5LNW RP5 9.28571
41 1EBG PAH 9.28571
42 4ZV1 ARG 10.7143
43 1H16 PYR 10.7143
44 3T03 3T0 11.4286
45 5HCN DAO 11.4286
46 4ZCW 4NG 12.1429
47 1OYF MHN 12.3967
48 3P3N AKG 13.5714
49 3TKI S25 14.2857
50 6GPC ARG 14.2857
51 2CKM AA7 17.1429
52 5Z84 PGV 18.3673
53 3W54 RNB 22.8571
54 4EKQ NPO 23.5714
Pocket No.: 6; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 4r38.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 4r38.bio4) has 21 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 4R38; Ligand: RBF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 4r38.bio3) has 22 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback